NAMESPACE

# exportPattern("^[[:alpha:]]+")


# --- Packages mgm depends on ---
# import(matrixcalc) # archived on CRAN
import(stringr)
import(Hmisc)
import(qgraph) # for FactorGraph()
import(gtools)
#import(glmnet) # now specificly below

#importFrom("gtools", "permutations")
importFrom("glmnet", "coef.glmnet", "glmnet", "cv.glmnet")


# Recommended by build check
importFrom("stats", "as.formula", "coef", "dnorm", "dpois",
             "model.matrix", "var", "quantile")
importFrom("utils", "combn", "setTxtProgressBar", "txtProgressBar")
importFrom("stats", "rnorm", "rpois")
importFrom("graphics", "abline", "axis", "layout", "par", "plot.new",
             "plot.window", "points", "segments", "text")
importFrom("graphics", "rect")
importFrom("stats", "sd")


# --- Exported functions ---
export(mgm)
export(mvar)

export(tvmgm)
export(tvmvar)
export(bwSelect)


export(mgmsampler)
export(mvarsampler)
export(tvmgmsampler)
export(tvmvarsampler)

export(resample)
export(showInteraction)
export(plotRes)

export(FactorGraph)
export(condition)


# Exported S3 Methods
S3method(predict, mgm)
S3method(print, mgm)
S3method(print, resample)
S3method(print, int)


# Export old functions with defunct msg
export(mgmfit)
export(var.mgm)
export(tv.mgmfit)
export(tv_var.mgm)