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[
[
{
"service": "AOP-Wiki Snorql UI",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/aopwiki.md",
"description": "A graphical interface to make queries to the AOP-Wiki SPARQL endpoint.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/aopwiki.png"
},
{
"service": "AOP-Wiki API",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/aopwikiapi.md",
"description": "A REST API for AOP-Wiki content to make SPARQL queries.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/aopwikiapi.png"
},
{
"service": "ArrayAnalysis",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/arrayanalysis.md",
"description": "A user-friendly service to conduct quality control and pre-processing analyses for microarray data.",
"png": "../../static/images/logo.png"
}
],
[
{
"service": "BioModels",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/biomodels.md",
"description": "A repository of mathematical models of biological and biomedical systems.",
"png": "../../static/images/logo.png"
},
{
"service": "BioTransformer",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/biotransformer.md",
"description": "A software tool to predict metabolites based on inputs in SMILE format.",
"png": "../../static/images/logo.png"
},
{
"service": "BridgeDb",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/bridgedb.md",
"description": "A framework to map identifiers between various biological databases and related sources.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/bridgedb.png"
}
],
[
{
"service": "CDK Depict",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/cdkdepict.md",
"description": "A webservice to convert SMILES into 2D depictions in either SVG, PNG, and PNG formats.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/cdkdepict.png"
},
{
"service": "CellDesigner",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/celldesigner.md",
"description": "A structured diagram editor to draw gene-regulatory and biochemical networks.",
"png": "../../static/images/logo.png"
},
{
"service": "CompTox",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/comptox.md",
"description": "An online database to provide access to chemistry, toxicity, and exposure information for chemicals.",
"png": "../../static/images/logo.png"
}
],
[
{
"service": "COPASI",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/copasi.md",
"description": "An open-source software application to create and solve mathematical models of biological processes such as metabolic networks, cell-signaling pathways, regulatory networks, infectious diseases, and many others.",
"png": "../../static/images/logo.png"
},
{
"service": "cpLogD",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/cplogd.md",
"description": "A model to predict water–octanol distribution coefficient (logD) for chemical compounds which is a proxy for the lipophilicity which is a major determinant of drug properties and overall suitability of drug candidates.",
"png": "../../static/images/logo.png"
},
{
"service": "DECIMER",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/decimer.md",
"description": "An online service to extract chemical structures from PDF-formatted files and images.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/decimer.png"
}
],
[
{
"service": "European Medicines Agency Documents",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/ema_documents.md",
"description": "An online repository of official reports from the European Medicines Agency.",
"png": "../../static/images/logo.png"
},
{
"service": "FAIRDOMHub",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/fairdomhub.md",
"description": "A web-accessible registry to store, share and publish research assets of biology projects.",
"png": "../../static/images/logo.png"
},
{
"service": "Fairspace",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/fairspace.md",
"description": "An open source data management platform that allows importing and exporting metadata using Resource Description Framework (RDF)",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/fairspace.png"
}
],
[
{
"service": "Flame",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/flame.md",
"description": "An open source framework to develop, host, and use machine-learning models, such as QSAR-like models, in production environments.",
"png": "../../static/images/logo.png"
},
{
"service": "Joint Research Centre Data Catalogue",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/jrc_data_catalogue.md",
"description": "An inventory of data produced by the Joint Research Centre (JRC) in accordance with the JRC Data Policy.",
"png": "../../static/images/logo.png"
},
{
"service": "VHP4Safety Wikibase User Interface",
"url": "md file not found",
"description": "A Synia-based graphical user interface to the content of the VHP4Safety Wikibase using SPARQL queries.",
"png": "../../static/images/logo.png"
}
],
[
{
"service": "The OECD QSAR Toolbox",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/oecd_qsar_toolbox.md",
"description": "A software to support hazard assessment of chemicals as well as to increase mechanistic and other knowledge on chemical substances in a cost-efficient way.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/oecd_qsar_toolbox.png"
},
{
"service": "OP PBK Model",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/oppbk_model.md",
"description": "To be added",
"png": "../../static/images/logo.png"
},
{
"service": "OPSIN: Open Parser for Systematic IUPAC nomenclature",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/opsin.md",
"description": "An online service with a tool to parse IUPAC names for chemicals into the chemical graph notation SMILES.",
"png": "../../static/images/logo.png"
}
],
[
{
"service": "QSPRpred",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/qsprpred.md",
"description": "A service to train and employ QSAR and PCM models that take a compound structure and pretrained model as input and returns the predicted potency of said compound.",
"png": "../../static/images/logo.png"
},
{
"service": "SOM Prediction",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/sombie.md",
"description": "A webservice to conduct protein-structure and reactivity based (P450) site-of-metabolism prediction.",
"png": "../../static/images/logo.png"
},
{
"service": "SysRev",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/sysrev.md",
"description": "An online service to conduct literature review, data extraction and systematic review.",
"png": "../../static/images/logo.png"
}
],
[
{
"service": "TXG-MAPr",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/txg_mapr.md",
"description": "An online application to implement weighted gene co-expression network analysis (WGCNA) derived from the Primary Human Hepatocytes (PHH) TG-GATEs data sets.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/txg_mapr.png"
},
{
"service": "VHP4Safety Wikibase",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/wikibase.md",
"description": "A Wikibase instance to store and present information about toxic, safe and potentially toxic compounds related to the VHP4Safety project.",
"png": "../../static/images/logo.png"
},
{
"service": "WikiPathways - AOP Portal",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/wikipathways_aop.md",
"description": "An Adverse Outcome Pathway (AOP) portal for WikiPathways to highlight the molecular basis of AOPs or events in AOPs.",
"png": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/wikipathways_aop.png"
}
],
[
{
"service": "xploreaop",
"url": "https://raw.githubusercontent.com/VHP4Safety/cloud/main/docs/service/xploreaop.md",
"description": "A web application to visualize Adverse Outcome Pathway (AOP) networks and interactively explore the AOPs for two liver outcomes, Cholestasis and Steatosis.",
"png": "../../static/images/logo.png"
}
]
]