diff --git a/Changes b/Changes index 8a5015ca..aa809543 100644 --- a/Changes +++ b/Changes @@ -1,5 +1,19 @@ LIST OF CHANGES +release 101.6.0 (2024-10-24) + - Added sample_uuid and sample_lims methods to st::api::lims + - Patched st::api::lims::samplesheet to allow for scalar attributes + ending with 's'. Previously the values of attributes with names + ending with 's' were automatically converted to lists. In fact, + this was necessary only for comma-separated strings of email addresses. + The part of code that deals with email addresses was changed to + work on attributes with names starting with 'email' rather than + ending with 's'. Prior to applying this patch the value of the + new 'sample_lims' attribute was returned as a list when a samplesheet + was used as a source of LIMS data. + - Documented handling of multiple values in st::api::lims. + - Added is_lane method and composition_object attribute to st::api::lims. + release 101.5.1 (2024-10-04) - Added .github/dependabot.yml file to auto-update GitHub actions - Following a release on 07/09/2024, see https://metacpan.org/dist/App-perlbrew/changes, diff --git a/MANIFEST b/MANIFEST index 9ad25f29..8cfd05e1 100644 --- a/MANIFEST +++ b/MANIFEST @@ -661,6 +661,7 @@ t/data/run_params/runParameters.hiseqx.xml t/data/run_params/runParameters.miseq.xml t/data/run_params/RunParameters.novaseq.xp.lite.xml t/data/run_params/RunParameters.novaseqx.prod.xml +t/data/samplesheet/data4merge.csv t/data/samplesheet/samplesheet_7753.csv t/data/samplesheet/samplesheet_27483.csv t/data/samplesheet/samplesheet_33990.csv diff --git a/lib/st/api/lims.pm b/lib/st/api/lims.pm index bfadd4c6..3f5d550d 100644 --- a/lib/st/api/lims.pm +++ b/lib/st/api/lims.pm @@ -11,6 +11,8 @@ use Class::Load qw/load_class/; use npg_tracking::util::types; use npg_tracking::glossary::rpt; +use npg_tracking::glossary::composition::component::illumina; +use npg_tracking::glossary::composition::factory; use npg_tracking::glossary::composition::factory::rpt_list; use npg_tracking::data::reference::util qw/parse_reference_genome_name/; @@ -44,18 +46,18 @@ st::api::lims =head1 DESCRIPTION -Generic NPG LIMS wrapper capable of retrieving data from multiple sources via -a number of source-specific drivers. Provides methods implementing business -logic that is independent of data source. +Generic NPG LIMS wrapper capable of retrieving data from multiple sources of +LIMS data via a number of source-specific drivers. Provides source-independent +set of methods for retrieving LIMS data for different types of entities. A set of valid arguments to the constructor depends on the driver type. The drivers are implemented as st::api::lims:: classes. -The default driver type is 'samplesheet'. The path to the samplesheet can be -set either in the 'path' constructor attribute or by setting the env. variable -NPG_CACHED_SAMPLESHEET_FILE. +The default driver type is C. The path to the samplesheet can be +set either in the 'path' constructor attribute or by setting the environment +variable NPG_CACHED_SAMPLESHEET_FILE. -All flavours of the ml_warehouse driver require access to the ml warehouse +All flavours of the C driver require access to the ml warehouse database. If the mlwh_schema constructor argument is not set, a connection to the database defined in a standard NPG configuration file is be used. @@ -74,6 +76,30 @@ through to the driver are be available as this object's attributes. Example: print $lims->driver_type; # ml_warehouse print $lims->iseq_flowcell(); # ERROR +=head2 Handling of Properties that Map to Multiple Values + +If a LIMS property C is described by a list of values of similar +semantics and data type, the return value of the C method is an +array of distinct values. Emails of followers, managers, etc. are examples of +this kind of properties. + +Complex entities like lanes, tag zero and compositions often represent multiple +individual libraries. Below the rules for computing the return values of +properties for complex entities are demonstrated using the C +property as an example. + +If all C values for individual libraries are the same, the return +value of the C property of the complex entity is this common +C value. + +If any of C values for individual libraries are different, then +the return value of the C property of the complex entity is C. + +For cases when it is necessary to know all C values of the +constituent libraries, this class provides C method and a number +of other similar methods, see comments for C variable +in the code below. + =head1 SUBROUTINES/METHODS =cut @@ -118,6 +144,8 @@ Readonly::Hash my %METHODS_PER_CATEGORY => { /], 'sample' => [qw/ sample_id + sample_uuid + sample_lims sample_name organism_taxon_id organism @@ -221,7 +249,7 @@ sub BUILD { Returns a hash reference that can be used to initialise st::api::lims objects similar to this object. The driver details, if present in this object, are returned under the 'driver_type' key and, if relevant, -'mlwh_schema' key. +'mlwh_schema' key. =cut sub copy_init_args { @@ -764,7 +792,7 @@ sub _build_separate_y_chromosome_data { Method returning a list of st::api::lims objects that are associated with this object and belong to the next (one lower) level. An empty list for a non-pool lane and for a plex. -For a pooled lane contains plex-level objects. On a run level, when the position +For a pooled lane contains plex-level objects. On a run level, when the position accessor is not set, returns lane level objects. For the st::api::lims type object that was instantiated with an rpt_list attribute, returns a list of st::api::lims type objects corresponding to individual components of the composition defined by the rpt_list attribute @@ -847,6 +875,76 @@ sub is_composition { return $self->rpt_list ? 1 : 0; } +=head2 composition_object + +A lazy-build attribute, C object for this +LIMS entity. The value is undefined for a run-level object. For some drivers +the value of C attribute might be undefined, in which case the value +of this attribute is undefined. This attribute cannot be set via the constructor. + +=cut + +has 'composition_object' => ( + isa => 'Maybe[npg_tracking::glossary::composition]', + is => 'ro', + required => 0, + init_arg => undef, + lazy_build => 1, +); +sub _build_composition_object { + my $self = shift; + + if ($self->is_composition) { + return npg_tracking::glossary::composition::factory::rpt_list + ->new(rpt_list => $self->rpt_list)->create_composition(); + } else { + if (defined $self->id_run && defined $self->position) { + my $component = npg_tracking::glossary::composition::component::illumina + ->new( + id_run => $self->id_run, + position => $self->position, + tag_index => $self->tag_index + ); + + my $factory = npg_tracking::glossary::composition::factory->new(); + $factory->add_component($component); + return $factory->create_composition(); + } + } + + return; +} + +=head2 is_lane + +Returns true (1) if this entity corresponds to a lane, false (0) otherwise. +Merged lane entities are not considered to be a lane. + +To determine whether the entity is a lane regardless of the way the +C is constructed, this method inspects the object returned +by the C method. When the C method +returns an undefined value, this method's return value is false. + + st::api::lims->new(id_run => 3, position => 4)->is_lane() # true + st::api::lims->new(rpt_list => '3:4')->is_lane() # true + st::api::lims->new(rpt_list => '2:4;3:4')->is_lane() # false + st::api::lims->new(id_run => 3, position => 4, tag_index => 2)->is_lane() # false + st::api::lims->new(id_run => 3, position => 4, tag_index => 0)->is_lane() # false + +=cut + +sub is_lane { + my $self = shift; + + my $obj = $self->composition_object(); + if (defined $obj && $obj->num_components() == 1 && + !defined $obj->get_component(0)->tag_index) { + return 1; + } + + return 0; +} + =head2 aggregate_libraries Given a list of lane-level C objects, finds their children, @@ -882,7 +980,7 @@ This method can be used both as instance and as a class method. my $all_lims = st::api::lims->aggregate_libraries($run_lims->children()); for my $l (@{$all_lims->{'singles'}}) { - print 'No merge for ' . $l->to_string; + print 'No merge for ' . $l->to_string; } for my $l (@{$all_lims->{'merges'}}) { print 'Merged entity ' . $l->to_string; @@ -1053,7 +1151,7 @@ sub _validate_lane_numbers { } =head2 create_tag_zero_object - + Using run ID and position values of this object, creates and returns st::api::lims object for tag zero. The new object has the same driver settings as the original object. @@ -1133,7 +1231,7 @@ sub descendants { Method providing fast (index-based) access to child lims object. Returns a hash ref of st::api::lims children objects An empty hash for a non-pool lane and for a plex. -For a pooled lane contains plex-level objects. On a run level, when the position +For a pooled lane contains plex-level objects. On a run level, when the position accessor is not set, returns lane level objects. The hash keys are lane numbers (positions) or tag indices. _ia stands for index access. @@ -1335,7 +1433,9 @@ __END__ =item npg_tracking::glossary::rpt -=item npg_tracking::glossary::composition::factory::rpt +=item npg_tracking::glossary::composition::factory + +=item npg_tracking::glossary::composition::factory::rpt_list =item npg_tracking::glossary::composition::component::illumina diff --git a/lib/st/api/lims/samplesheet.pm b/lib/st/api/lims/samplesheet.pm index 69fe858b..5cc7b5b4 100644 --- a/lib/st/api/lims/samplesheet.pm +++ b/lib/st/api/lims/samplesheet.pm @@ -315,7 +315,9 @@ for my $m ( st::api::lims->driver_method_list_short(__PACKAGE__->meta->get_attri if (defined $value && $value eq q[]) { $value = undef; } - if ($m =~ /s$/smx) { + if ($m =~ /^email_addresses/smx) { + # Handle potentially multiple email addressees, return an array of + # one, none or multiple values. my @temp = $value ? split $SAMPLESHEET_ARRAY_SEPARATOR, $value : (); $value = \@temp; } elsif ($m eq 'required_insert_size_range') { diff --git a/t/40-st-lims-ml_warehouse-drivers.t b/t/40-st-lims-ml_warehouse-drivers.t index fc155642..b865fd77 100644 --- a/t/40-st-lims-ml_warehouse-drivers.t +++ b/t/40-st-lims-ml_warehouse-drivers.t @@ -140,7 +140,7 @@ qr/No record retrieved for st::api::lims::ml_warehouse\w* id_flowcell_lims 22043 }; subtest 'lane-level driver from run-level driver' => sub { - plan tests => 108; + plan tests => 124; my $count = 0; for my $p ($mlwh_d, $mlwh_auto_d, $mlwh_auto_d, $mlwh_alt_d) { @@ -169,6 +169,8 @@ subtest 'lane-level driver from run-level driver' => sub { ok (!$d->study_name, 'no study name'); ok (!$d->sample_id, 'no sample_id'); ok (!$d->sample_supplier_name, 'no supplier name'); + ok (!$d->sample_uuid, 'no sample uuid'); + ok (!$d->sample_lims, 'no sample lims'); ok (!$d->sample_cohort, 'no cohort'); ok (!$d->sample_donor_id, 'no donor id'); is ($d->default_tag_sequence, undef, 'first index sequence undefined'); @@ -184,6 +186,8 @@ subtest 'lane-level driver from run-level driver' => sub { ok(!$lims1->sample_consent_withdrawn(), 'sample consent not withdrawn'); is ($lims1->sample_id, 7283, 'sample id'); is ($lims1->sample_supplier_name, 'sample_33', 'supplier name'); + is ($lims1->sample_uuid, 'fdb13110-6a55-11e4-8e19-68b59977951c', 'sample uuid'); + is ($lims1->sample_lims, 'CLARITY', 'sample lims'); is ($lims1->sample_cohort, 'plan2', 'cohort'); is ($lims1->sample_donor_id, 'd5678', 'donor id'); is ($lims1->purpose, 'qc', 'purpose'); @@ -276,7 +280,7 @@ sub _add2query { } subtest 'lane and tag level drivers' => sub { - plan tests => 136; + plan tests => 152; my $lims_id = 16249; my $id_run = 45678; @@ -323,6 +327,8 @@ subtest 'lane and tag level drivers' => sub { is (scalar $lims->children, 9, 'tag zero - nine-long children list'); is ($lims->spiked_phix_tag_index, 168, 'spike index'); ok (!$lims->sample_supplier_name, 'no supplier name'); + ok (!$lims->sample_uuid, 'no sample uuid'); + ok (!$lims->sample_lims, 'no sample lims'); ok (!$lims->sample_cohort, 'no cohort'); ok (!$lims->sample_donor_id, 'no donor id'); is ($lims->default_tag_sequence, undef, 'first index sequence undefined'); @@ -340,6 +346,8 @@ subtest 'lane and tag level drivers' => sub { ok (!$lims->is_control, 'tag 2 is not control'); is ($lims->sample_id, 1092803, 'sample id'); is ($lims->sample_supplier_name, 'sample_33', 'supplier name'); + is ($lims->sample_uuid, 'f44b2ec0-6f67-11e4-a268-68b59977951c', 'sample uuid'); + is ($lims->sample_lims, 'SQSCP', 'sample lims'); is ($lims->sample_cohort, 'plan1', 'cohort'); is ($lims->sample_donor_id, '5678', 'donor id'); is ($lims->default_tag_sequence, 'CGATGT', 'first index sequence'); diff --git a/t/40-st-lims-samplesheet.t b/t/40-st-lims-samplesheet.t index 78c785ed..92cc25b0 100644 --- a/t/40-st-lims-samplesheet.t +++ b/t/40-st-lims-samplesheet.t @@ -1,6 +1,6 @@ use strict; use warnings; -use Test::More tests => 11; +use Test::More tests => 12; use Test::Exception; use Test::Warn; use File::Slurp; @@ -397,4 +397,26 @@ subtest 'dual index default' => sub { is($p->default_tagtwo_sequence, undef, 'no second index'); }; +subtest 'sample uuid and LIMS id' => sub { + plan tests => 10; + + my $path = 't/data/samplesheet/4pool4libs_extended.csv'; + my $ss = st::api::lims::samplesheet->new(id_run => 6946, position => 1, path => $path); + ok (!$ss->is_pool, 'lane 1 is not a pool'); + is ($ss->sample_uuid, 'c46e1810-e8aa-11e2-aafd-68b59976a382', 'sample uuid'); + is ($ss->sample_lims, 'SQSCP', 'sample lims'); + $ss = st::api::lims::samplesheet->new(id_run => 6946, position => 6, path => $path); + ok ($ss->is_pool, 'lane 6 is a pool'); + is ($ss->sample_uuid, undef, 'sample uuid is not defined'); + is ($ss->sample_lims, undef, 'sample lims is not defined'); + my @plexes = $ss->children(); + is ($plexes[0]->sample_uuid, '62a06c60-2139-11e3-b2c2-68b59976a382', + 'sample uuid for a plex'); + is ($plexes[0]->sample_lims, 'SQSCP', 'sample lims for a plex'); + $ss = st::api::lims::samplesheet->new( + id_run => 6946, position => 6, tag_index => 0, path => $path); + is ($ss->sample_uuid, undef, 'sample uuid is not defined'); + is ($ss->sample_lims, undef, 'sample lims is not defined'); +}; + 1; diff --git a/t/40-st-lims.t b/t/40-st-lims.t index 02ec3ac5..3b1a34a2 100644 --- a/t/40-st-lims.t +++ b/t/40-st-lims.t @@ -5,7 +5,7 @@ use Test::Exception; use Test::Warn; use Moose::Meta::Class; -my $num_delegated_methods = 45; +my $num_delegated_methods = 47; use_ok('st::api::lims'); @@ -89,7 +89,7 @@ subtest 'Driver type, methods and driver build' => sub { }; subtest 'Setting return value for primary attributes' => sub { - plan tests => 21; + plan tests => 27; my @other = qw/id_flowcell_lims flowcell_barcode/; my $ss_path = 't/data/samplesheet/miseq_default.csv'; @@ -106,8 +106,17 @@ subtest 'Setting return value for primary attributes' => sub { is ($lims->position, 1, 'position is set correctly'); is ($lims->tag_index, 0, 'tag_index is set to zero'); ok ($lims->is_pool, 'tag zero is a pool'); + my $json = '{"components":[{"id_run":6551,"position":1,"tag_index":0}]}'; + is ($lims->composition_object->freeze(), $json, + 'composition object is generated'); + ok (!$lims->is_lane, 'tag zero is not a lane'); my $lane_lims = st::api::lims->new(id_run => 6551, position => 1); + $json = '{"components":[{"id_run":6551,"position":1}]}'; + is ($lane_lims->composition_object->freeze(), $json, + 'composition object is generated'); + ok ($lane_lims->is_lane, 'a lane is a lane'); + $lims = st::api::lims->new(driver => $lane_lims->driver(), id_run => 6551, position => 1, @@ -127,21 +136,36 @@ subtest 'Setting return value for primary attributes' => sub { push @a, qw/id_run position tag_index/; is ($lims->rpt_list, '6551:1', 'rpt_list is set correctly'); ok ($lims->is_composition, 'is a composition'); + is ($lims->composition_object->freeze(), $json, 'composition object is generated'); + ok ($lims->is_lane, 'and it is a lane'); for my $attr (@a) { is($lims->$attr, undef, "$attr is undefined"); } }; subtest 'Run-level object via samplesheet driver' => sub { - plan tests => 36; + plan tests => 50; my $path = 't/data/samplesheet/miseq_default.csv'; - my $ss = st::api::lims->new(id_run => 10262, path => $path, driver_type => 'samplesheet'); - isa_ok ($ss->driver, 'st::api::lims::samplesheet', 'samplesheet driver object instantiated'); + my $ss = st::api::lims->new(path => $path, driver_type => 'samplesheet'); + is ($ss->composition_object, undef, 'composition object is undefined'); + ok (!$ss->is_lane, 'not a lane'); my @lanes; lives_ok {@lanes = $ss->children} 'can get lane-level objects'; + my $json = '{"components":[{"id_run":10262,"position":1}]}'; + is ($lanes[0]->id_run, 10262, 'lane id_run is set'); + is ($lanes[0]->composition_object->freeze(), $json, 'composition object is generated'); + ok ($lanes[0]->is_lane, 'a lane is a lane'); + + $ss = st::api::lims->new(id_run => 10262, path => $path, driver_type => 'samplesheet'); + isa_ok ($ss->driver, 'st::api::lims::samplesheet', 'samplesheet driver object instantiated'); + is ($ss->composition_object, undef, 'composition object is undefined'); + ok (!$ss->is_lane, 'not a lane'); + lives_ok {@lanes = $ss->children} 'can get lane-level objects'; + is ($lanes[0]->composition_object->freeze(), $json, 'composition object is generated'); is ($lanes[0]->id_run, 10262, 'lane id_run as set'); + ok ($lanes[0]->is_lane, 'is a lane'); $ss = st::api::lims->new(id_run => 10000, path => $path, driver_type => 'samplesheet'); is ($ss->id_run, 10000, 'id_run as set'); @@ -176,6 +200,8 @@ subtest 'Run-level object via samplesheet driver' => sub { is ($plexes[0]->id_run, 10262, 'id_run of the first plexe set correctly from Experiment Name'); is ($plexes[0]->library_id, 7583411, 'library_id of the first plex'); is ($plexes[0]->sample_name, 'LIA_1', 'sample_name of the first plex'); + is ($plexes[0]->sample_uuid, undef, 'sample_uuid of the first plex'); + is ($plexes[0]->sample_lims, undef, 'sample_lims of the first plex'); is ($plexes[0]->sample_id, undef, 'sample_id of the first plex in undefined'); is ($plexes[0]->is_pool, 0, 'is_pool false on plex level'); is ($plexes[0]->is_control, undef, 'is_control false on for a plex'); @@ -187,10 +213,12 @@ subtest 'Run-level object via samplesheet driver' => sub { is ($plexes[95]->tag_sequence, 'GTCTTGGC', 'tag sequence of the last plex'); is ($plexes[95]->library_id, 7583506, 'library_id of the last plex'); is ($plexes[95]->sample_name, 'LIA_96', 'sample_name of the last plex'); + is ($plexes[95]->sample_uuid, undef, 'sample_uuid of the last plex'); + is ($plexes[95]->sample_lims, undef, 'sample_lims of the last plex'); }; subtest 'Lane-level and tag zero objects via samplesheet driver' => sub { - plan tests => 20; + plan tests => 24; my $path = 't/data/samplesheet/miseq_default.csv'; @@ -217,13 +245,15 @@ subtest 'Lane-level and tag zero objects via samplesheet driver' => sub { is (scalar $ss->children, 96, '96 plexes returned'); is ($ss->library_id, undef, 'library_id undefined'); is ($ss->sample_name, undef, 'sample name is undefined'); + is ($ss->sample_uuid, undef, 'sample uuid is undefined'); + is ($ss->sample_lims, undef, 'sample lims is undefined'); is ($ss->default_tag_sequence, undef, 'default tag sequence undefined'); is ($ss->tag_sequence, undef, 'tag sequence undefined'); } }; subtest 'Plex-level objects via samplesheet driver' => sub { - plan tests => 10; + plan tests => 14; my $path = 't/data/samplesheet/miseq_default.csv'; my $l; @@ -239,11 +269,17 @@ subtest 'Plex-level objects via samplesheet driver' => sub { is ($l->position, 1, 'correct position'); is ($l->tag_index, 3, 'correct tag_index'); is ($l->is_pool, 0, 'plex is not a pool'); + is ($l->composition_object->freeze(), + '{"components":[{"id_run":10262,"position":1,"tag_index":3}]}', + 'composition object is generated'); + is ($l->is_lane, 0, 'plex is not a lane'); is ($l->default_tag_sequence, 'TTAGGCAT', 'correct default tag sequence'); is ($l->tag_sequence, $l->default_tag_sequence, 'tag sequence is the same as default tag sequence'); is ($l->library_id, 7583413, 'library id is correct'); is ($l->sample_name, 'LIA_3', 'sample name is correct'); + is ($l->sample_uuid, undef, 'sample uuid is undefined'); + is ($l->sample_lims, undef, 'sample lims is undefined'); is (scalar $l->children, 0, 'zero children returned'); }; @@ -284,7 +320,7 @@ subtest 'Samplesheet driver for a one-component composition' => sub { }; subtest 'Samplesheet driver for arbitrary compositions' => sub { - plan tests => 75; + plan tests => 95; my $path = 't/data/samplesheet/novaseq_multirun.csv'; local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = $path; @@ -305,6 +341,8 @@ subtest 'Samplesheet driver for arbitrary compositions' => sub { is($o->default_tagtwo_sequence, 'CCAACAGA', 'tag2 sequence'); is($o->default_library_type, 'HiSeqX PCR free', 'library type'); is($o->sample_name, '7592352', 'sample name'); + is($o->sample_uuid, undef, 'sample uuid'); + is($o->sample_lims, undef, 'sample lims'); is($o->study_name, 'UK Study', 'study name'); is($o->library_name, '22802061', 'library name'); is($o->reference_genome, 'Homo_sapiens (GRCh38_15_plus_hs38d1) [minimap2]', @@ -342,6 +380,35 @@ subtest 'Samplesheet driver for arbitrary compositions' => sub { is ($ss->id_run, 28780, 'correct run id'); is ($ss->position, 2, 'correct position'); is ($ss->tag_index, 4, 'correct tag_index'); + + $path = 't/data/samplesheet/data4merge.csv'; + local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = $path; + + $rpt_list = '26480:1:9;26480:2:9'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->sample_uuid, '673165ec-f8c6-11e0-8838-68b59976a382', + 'sample uuid for a composition'); + is ($ss->sample_lims, 'CLARITY', 'sample lims for a composition'); + + $rpt_list = '26480:3:9;26480:4:9'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->sample_uuid, 'b6ea25f0-f8cc-11e0-8838-68b59976a382', + 'sample uuid for a composition'); + is ($ss->sample_lims, 'Traction', 'sample lims for a composition'); + + $rpt_list = '26480:1:9;26480:2:9;26480:3:9;26480:4:9'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->sample_uuid, undef, 'sample uuid for a composition is undefined ' . + 'since the values for individual components differ'); + is ($ss->sample_lims, undef, 'sample lims for a composition is undefined ' . + 'since the values for individual components differ'); + + $rpt_list = '26480:1;26480:2'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->composition_object->freeze(), + '{"components":[{"id_run":26480,"position":1},{"id_run":26480,"position":2}]}', + 'composition object is generated'); + ok (!$ss->is_lane, 'merged lanes entity is not a lane'); }; subtest 'Dual index' => sub { diff --git a/t/data/fixtures_stlims_wh/000-Sample.yml b/t/data/fixtures_stlims_wh/000-Sample.yml index 97d431fd..d20de925 100644 --- a/t/data/fixtures_stlims_wh/000-Sample.yml +++ b/t/data/fixtures_stlims_wh/000-Sample.yml @@ -5,7 +5,7 @@ created: 2009-07-01 16:23:00 deleted_at: ~ description: ~ - id_lims: SQSCP + id_lims: CLARITY id_sample_lims: 7283 cohort: plan2 donor_id: d5678 diff --git a/t/data/samplesheet/4pool4libs_extended.csv b/t/data/samplesheet/4pool4libs_extended.csv index 87a7ad1b..7a5f8dbc 100644 --- a/t/data/samplesheet/4pool4libs_extended.csv +++ b/t/data/samplesheet/4pool4libs_extended.csv @@ -1,112 +1,112 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -1,7809257,ERS323818,,,,,No PCR,,,,,,,,0,0,8381746,0,7809257,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323818,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660679,,Hc_4_BC4_P2_5046_340285,Haemonchus contortus MHco3%2F4.BC4(P2)-5046,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, -2,7809258,ERS323819,,,,Fox bait,No PCR,,,,,,,,0,0,8381744,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, -3,7809258,ERS323819,,,,,No PCR,,,,,,,,0,0,8381745,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, -4,8215019,ERS351213,,TAAGGCGA,TAGATCGC,,qPCR only,TAAGGCGATAGATCGC,,,,,,,0,0,8381739,0,8215019,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351213,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706390,,mES_ai2_s2_cell1,mES_ai2_s2_cell1,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,1, -4,8215020,ERS351214,,CGTACTAG,TAGATCGC,,qPCR only,CGTACTAGTAGATCGC,,,,,,,0,0,8381739,0,8215020,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351214,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706391,,mES_ai2_s2_cell2,mES_ai2_s2_cell2,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,2, -4,8215021,ERS351221,,AGGCAGAA,TAGATCGC,,qPCR only,AGGCAGAATAGATCGC,,,,,,,0,0,8381739,0,8215021,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351221,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706392,,mES_ai2_s2_cell3,mES_ai2_s2_cell3,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,3, -4,8215022,ERS351222,,TCCTGAGC,TAGATCGC,,qPCR only,TCCTGAGCTAGATCGC,,,,,,,0,0,8381739,0,8215022,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351222,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706393,,mES_ai2_s2_cell4,mES_ai2_s2_cell4,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,4, -4,8215023,ERS351223,,GGACTCCT,TAGATCGC,,qPCR only,GGACTCCTTAGATCGC,,,,,,,0,0,8381739,0,8215023,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351223,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706394,,mES_ai2_s2_cell5,mES_ai2_s2_cell5,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,5, -4,8215024,ERS351224,,TAGGCATG,TAGATCGC,,qPCR only,TAGGCATGTAGATCGC,,,,,,,0,0,8381739,0,8215024,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351224,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706395,,mES_ai2_s2_cell6,mES_ai2_s2_cell6,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,6, -4,8215025,ERS351225,,CTCTCTAC,TAGATCGC,,qPCR only,CTCTCTACTAGATCGC,,,,,,,0,0,8381739,0,8215025,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351225,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706396,,mES_ai2_s2_cell7,mES_ai2_s2_cell7,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,7, -4,8215026,ERS351218,,CAGAGAGG,TAGATCGC,,qPCR only,CAGAGAGGTAGATCGC,,,,,,,0,0,8381739,0,8215026,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351218,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706397,,mES_ai2_s2_cell8,mES_ai2_s2_cell8,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,8, -4,8215027,ERS351219,,GCTACGCT,TAGATCGC,,qPCR only,GCTACGCTTAGATCGC,,,,,,,0,0,8381739,0,8215027,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351219,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706398,,mES_ai2_s2_cell9,mES_ai2_s2_cell9,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,9, -4,8215028,ERS351220,,CGAGGCTG,TAGATCGC,,qPCR only,CGAGGCTGTAGATCGC,,,,,,,0,0,8381739,0,8215028,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351220,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706399,,mES_ai2_s2_cell10,mES_ai2_s2_cell10,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,10, -4,8215029,ERS351235,,AAGAGGCA,TAGATCGC,,qPCR only,AAGAGGCATAGATCGC,,,,,,,0,0,8381739,0,8215029,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351235,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706400,,mES_ai2_s2_cell11,mES_ai2_s2_cell11,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,11, -4,8215030,ERS351237,,GTAGAGGA,TAGATCGC,,qPCR only,GTAGAGGATAGATCGC,,,,,,,0,0,8381739,0,8215030,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351237,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706401,,mES_ai2_s2_cell12,mES_ai2_s2_cell12,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,12, -4,8215031,ERS351238,,TAAGGCGA,CTCTCTAT,,qPCR only,TAAGGCGACTCTCTAT,,,,,,,0,0,8381739,0,8215031,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351238,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706402,,mES_ai2_s2_cell13,mES_ai2_s2_cell13,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,13, -4,8215032,ERS351239,,CGTACTAG,CTCTCTAT,,qPCR only,CGTACTAGCTCTCTAT,,,,,,,0,0,8381739,0,8215032,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351239,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706403,,mES_ai2_s2_cell14,mES_ai2_s2_cell14,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,14, -4,8215033,ERS351241,,AGGCAGAA,CTCTCTAT,,qPCR only,AGGCAGAACTCTCTAT,,,,,,,0,0,8381739,0,8215033,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351241,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706404,,mES_ai2_s2_cell15,mES_ai2_s2_cell15,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,15, -4,8215034,ERS351226,,TCCTGAGC,CTCTCTAT,,qPCR only,TCCTGAGCCTCTCTAT,,,,,,,0,0,8381739,0,8215034,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351226,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706405,,mES_ai2_s2_cell16,mES_ai2_s2_cell16,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,16, -4,8215035,ERS351227,,GGACTCCT,CTCTCTAT,,qPCR only,GGACTCCTCTCTCTAT,,,,,,,0,0,8381739,0,8215035,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351227,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706406,,mES_ai2_s2_cell17,mES_ai2_s2_cell17,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,17, -4,8215036,ERS351234,,TAGGCATG,CTCTCTAT,,qPCR only,TAGGCATGCTCTCTAT,,,,,,,0,0,8381739,0,8215036,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351234,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706407,,mES_ai2_s2_cell18,mES_ai2_s2_cell18,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,18, -4,8215037,ERS351236,,CTCTCTAC,CTCTCTAT,,qPCR only,CTCTCTACCTCTCTAT,,,,,,,0,0,8381739,0,8215037,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351236,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706408,,mES_ai2_s2_cell19,mES_ai2_s2_cell19,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,19, -4,8215038,ERS351247,,CAGAGAGG,CTCTCTAT,,qPCR only,CAGAGAGGCTCTCTAT,,,,,,,0,0,8381739,0,8215038,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351247,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706409,,mES_ai2_s2_cell20,mES_ai2_s2_cell20,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,20, -4,8215039,ERS351249,,GCTACGCT,CTCTCTAT,,qPCR only,GCTACGCTCTCTCTAT,,,,,,,0,0,8381739,0,8215039,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351249,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706410,,mES_ai2_s2_cell21,mES_ai2_s2_cell21,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,21, -4,8215040,ERS351251,,CGAGGCTG,CTCTCTAT,,qPCR only,CGAGGCTGCTCTCTAT,,,,,,,0,0,8381739,0,8215040,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351251,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706411,,mES_ai2_s2_cell22,mES_ai2_s2_cell22,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,22, -4,8215041,ERS351252,,AAGAGGCA,CTCTCTAT,,qPCR only,AAGAGGCACTCTCTAT,,,,,,,0,0,8381739,0,8215041,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351252,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706412,,mES_ai2_s2_cell23,mES_ai2_s2_cell23,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,23, -4,8215042,ERS351242,,GTAGAGGA,CTCTCTAT,,qPCR only,GTAGAGGACTCTCTAT,,,,,,,0,0,8381739,0,8215042,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351242,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706413,,mES_ai2_s2_cell24,mES_ai2_s2_cell24,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,24, -4,8215043,ERS351243,,TAAGGCGA,TATCCTCT,,qPCR only,TAAGGCGATATCCTCT,,,,,,,0,0,8381739,0,8215043,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351243,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706414,,mES_ai2_s2_cell25,mES_ai2_s2_cell25,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,25, -4,8215044,ERS351244,,CGTACTAG,TATCCTCT,,qPCR only,CGTACTAGTATCCTCT,,,,,,,0,0,8381739,0,8215044,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351244,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706415,,mES_ai2_s2_cell26,mES_ai2_s2_cell26,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,26, -4,8215045,ERS351245,,AGGCAGAA,TATCCTCT,,qPCR only,AGGCAGAATATCCTCT,,,,,,,0,0,8381739,0,8215045,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351245,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706416,,mES_ai2_s2_cell27,mES_ai2_s2_cell27,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,27, -4,8215046,ERS351248,,TCCTGAGC,TATCCTCT,,qPCR only,TCCTGAGCTATCCTCT,,,,,,,0,0,8381739,0,8215046,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351248,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706417,,mES_ai2_s2_cell28,mES_ai2_s2_cell28,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,28, -4,8215047,ERS351250,,GGACTCCT,TATCCTCT,,qPCR only,GGACTCCTTATCCTCT,,,,,,,0,0,8381739,0,8215047,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351250,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706418,,mES_ai2_s2_cell29,mES_ai2_s2_cell29,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,29, -4,8215048,ERS351260,,TAGGCATG,TATCCTCT,,qPCR only,TAGGCATGTATCCTCT,,,,,,,0,0,8381739,0,8215048,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351260,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706419,,mES_ai2_s2_cell30,mES_ai2_s2_cell30,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,30, -4,8215049,ERS351261,,CTCTCTAC,TATCCTCT,,qPCR only,CTCTCTACTATCCTCT,,,,,,,0,0,8381739,0,8215049,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351261,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706420,,mES_ai2_s2_cell31,mES_ai2_s2_cell31,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,31, -4,8215050,ERS351254,,CAGAGAGG,TATCCTCT,,qPCR only,CAGAGAGGTATCCTCT,,,,,,,0,0,8381739,0,8215050,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351254,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706421,,mES_ai2_s2_cell32,mES_ai2_s2_cell32,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,32, -4,8215051,ERS351255,,GCTACGCT,TATCCTCT,,qPCR only,GCTACGCTTATCCTCT,,,,,,,0,0,8381739,0,8215051,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351255,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706422,,mES_ai2_s2_cell33,mES_ai2_s2_cell33,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,33, -4,8215052,ERS351256,,CGAGGCTG,TATCCTCT,,qPCR only,CGAGGCTGTATCCTCT,,,,,,,0,0,8381739,0,8215052,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351256,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706423,,mES_ai2_s2_cell34,mES_ai2_s2_cell34,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,34, -4,8215053,ERS351257,,AAGAGGCA,TATCCTCT,,qPCR only,AAGAGGCATATCCTCT,,,,,,,0,0,8381739,0,8215053,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351257,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706424,,mES_ai2_s2_cell35,mES_ai2_s2_cell35,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,35, -4,8215054,ERS351258,,GTAGAGGA,TATCCTCT,,qPCR only,GTAGAGGATATCCTCT,,,,,,,0,0,8381739,0,8215054,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351258,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706425,,mES_ai2_s2_cell36,mES_ai2_s2_cell36,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,36, -4,8215055,ERS351259,,TAAGGCGA,AGAGTAGA,,qPCR only,TAAGGCGAAGAGTAGA,,,,,,,0,0,8381739,0,8215055,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351259,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706426,,mES_ai2_s2_cell37,mES_ai2_s2_cell37,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,37, -4,8215056,ERS351269,,CGTACTAG,AGAGTAGA,,qPCR only,CGTACTAGAGAGTAGA,,,,,,,0,0,8381739,0,8215056,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351269,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706427,,mES_ai2_s2_cell38,mES_ai2_s2_cell38,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,38, -4,8215057,ERS351271,,AGGCAGAA,AGAGTAGA,,qPCR only,AGGCAGAAAGAGTAGA,,,,,,,0,0,8381739,0,8215057,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351271,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706428,,mES_ai2_s2_cell39,mES_ai2_s2_cell39,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,39, -4,8215058,ERS351262,,TCCTGAGC,AGAGTAGA,,qPCR only,TCCTGAGCAGAGTAGA,,,,,,,0,0,8381739,0,8215058,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351262,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706429,,mES_ai2_s2_cell40,mES_ai2_s2_cell40,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,40, -4,8215059,ERS351263,,GGACTCCT,AGAGTAGA,,qPCR only,GGACTCCTAGAGTAGA,,,,,,,0,0,8381739,0,8215059,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351263,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706430,,mES_ai2_s2_cell41,mES_ai2_s2_cell41,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,41, -4,8215060,ERS351264,,TAGGCATG,AGAGTAGA,,qPCR only,TAGGCATGAGAGTAGA,,,,,,,0,0,8381739,0,8215060,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351264,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706431,,mES_ai2_s2_cell42,mES_ai2_s2_cell42,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,42, -4,8215061,ERS351266,,CTCTCTAC,AGAGTAGA,,qPCR only,CTCTCTACAGAGTAGA,,,,,,,0,0,8381739,0,8215061,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351266,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706432,,mES_ai2_s2_cell43,mES_ai2_s2_cell43,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,43, -4,8215062,ERS351267,,CAGAGAGG,AGAGTAGA,,qPCR only,CAGAGAGGAGAGTAGA,,,,,,,0,0,8381739,0,8215062,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351267,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706433,,mES_ai2_s2_cell44,mES_ai2_s2_cell44,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,44, -4,8215063,ERS351268,,GCTACGCT,AGAGTAGA,,qPCR only,GCTACGCTAGAGTAGA,,,,,,,0,0,8381739,0,8215063,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351268,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706434,,mES_ai2_s2_cell45,mES_ai2_s2_cell45,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,45, -4,8215064,ERS351270,,CGAGGCTG,AGAGTAGA,,qPCR only,CGAGGCTGAGAGTAGA,,,,,,,0,0,8381739,0,8215064,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351270,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706435,,mES_ai2_s2_cell46,mES_ai2_s2_cell46,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,46, -4,8215065,ERS351272,,AAGAGGCA,AGAGTAGA,,qPCR only,AAGAGGCAAGAGTAGA,,,,,,,0,0,8381739,0,8215065,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351272,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706436,,mES_ai2_s2_cell47,mES_ai2_s2_cell47,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,47, -4,8215066,ERS351273,,GTAGAGGA,AGAGTAGA,,qPCR only,GTAGAGGAAGAGTAGA,,,,,,,0,0,8381739,0,8215066,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351273,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706437,,mES_ai2_s2_cell48,mES_ai2_s2_cell48,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,48, -4,8215067,ERS351275,,TAAGGCGA,GTAAGGAG,,qPCR only,TAAGGCGAGTAAGGAG,,,,,,,0,0,8381739,0,8215067,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351275,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706438,,mES_ai2_s2_cell49,mES_ai2_s2_cell49,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,49, -4,8215068,ERS351277,,CGTACTAG,GTAAGGAG,,qPCR only,CGTACTAGGTAAGGAG,,,,,,,0,0,8381739,0,8215068,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351277,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706439,,mES_ai2_s2_cell50,mES_ai2_s2_cell50,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,50, -4,8215069,ERS351278,,AGGCAGAA,GTAAGGAG,,qPCR only,AGGCAGAAGTAAGGAG,,,,,,,0,0,8381739,0,8215069,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351278,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706440,,mES_ai2_s2_cell51,mES_ai2_s2_cell51,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,51, -4,8215070,ERS351279,,TCCTGAGC,GTAAGGAG,,qPCR only,TCCTGAGCGTAAGGAG,,,,,,,0,0,8381739,0,8215070,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351279,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706441,,mES_ai2_s2_cell52,mES_ai2_s2_cell52,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,52, -4,8215071,ERS351280,,GGACTCCT,GTAAGGAG,,qPCR only,GGACTCCTGTAAGGAG,,,,,,,0,0,8381739,0,8215071,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351280,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706442,,mES_ai2_s2_cell53,mES_ai2_s2_cell53,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,53, -4,8215072,ERS351281,,TAGGCATG,GTAAGGAG,,qPCR only,TAGGCATGGTAAGGAG,,,,,,,0,0,8381739,0,8215072,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351281,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706443,,mES_ai2_s2_cell54,mES_ai2_s2_cell54,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,54, -4,8215073,ERS351282,,CTCTCTAC,GTAAGGAG,,qPCR only,CTCTCTACGTAAGGAG,,,,,,,0,0,8381739,0,8215073,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351282,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706444,,mES_ai2_s2_cell55,mES_ai2_s2_cell55,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,55, -4,8215074,ERS351274,,CAGAGAGG,GTAAGGAG,,qPCR only,CAGAGAGGGTAAGGAG,,,,,,,0,0,8381739,0,8215074,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351274,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706445,,mES_ai2_s2_cell56,mES_ai2_s2_cell56,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,56, -4,8215075,ERS351276,,GCTACGCT,GTAAGGAG,,qPCR only,GCTACGCTGTAAGGAG,,,,,,,0,0,8381739,0,8215075,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351276,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706446,,mES_ai2_s2_cell57,mES_ai2_s2_cell57,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,57, -4,8215076,ERS351285,,CGAGGCTG,GTAAGGAG,,qPCR only,CGAGGCTGGTAAGGAG,,,,,,,0,0,8381739,0,8215076,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351285,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706447,,mES_ai2_s2_cell58,mES_ai2_s2_cell58,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,58, -4,8215077,ERS351286,,AAGAGGCA,GTAAGGAG,,qPCR only,AAGAGGCAGTAAGGAG,,,,,,,0,0,8381739,0,8215077,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351286,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706448,,mES_ai2_s2_cell59,mES_ai2_s2_cell59,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,59, -4,8215078,ERS351287,,GTAGAGGA,GTAAGGAG,,qPCR only,GTAGAGGAGTAAGGAG,,,,,,,0,0,8381739,0,8215078,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351287,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706449,,mES_ai2_s2_cell60,mES_ai2_s2_cell60,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,60, -4,8215079,ERS351288,,TAAGGCGA,ACTGCATA,,qPCR only,TAAGGCGAACTGCATA,,,,,,,0,0,8381739,0,8215079,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351288,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706450,,mES_ai2_s2_cell61,mES_ai2_s2_cell61,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,61, -4,8215080,ERS351289,,CGTACTAG,ACTGCATA,,qPCR only,CGTACTAGACTGCATA,,,,,,,0,0,8381739,0,8215080,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351289,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706451,,mES_ai2_s2_cell62,mES_ai2_s2_cell62,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,62, -4,8215081,ERS351290,,AGGCAGAA,ACTGCATA,,qPCR only,AGGCAGAAACTGCATA,,,,,,,0,0,8381739,0,8215081,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351290,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706452,,mES_ai2_s2_cell63,mES_ai2_s2_cell63,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,63, -4,8215082,ERS351283,,TCCTGAGC,ACTGCATA,,qPCR only,TCCTGAGCACTGCATA,,,,,,,0,0,8381739,0,8215082,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351283,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706453,,mES_ai2_s2_cell64,mES_ai2_s2_cell64,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,64, -4,8215083,ERS351284,,GGACTCCT,ACTGCATA,,qPCR only,GGACTCCTACTGCATA,,,,,,,0,0,8381739,0,8215083,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351284,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706454,,mES_ai2_s2_cell65,mES_ai2_s2_cell65,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,65, -4,8215084,ERS351292,,TAGGCATG,ACTGCATA,,qPCR only,TAGGCATGACTGCATA,,,,,,,0,0,8381739,0,8215084,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351292,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706455,,mES_ai2_s2_cell66,mES_ai2_s2_cell66,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,66, -4,8215085,ERS351293,,CTCTCTAC,ACTGCATA,,qPCR only,CTCTCTACACTGCATA,,,,,,,0,0,8381739,0,8215085,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351293,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706456,,mES_ai2_s2_cell67,mES_ai2_s2_cell67,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,67, -4,8215086,ERS351294,,CAGAGAGG,ACTGCATA,,qPCR only,CAGAGAGGACTGCATA,,,,,,,0,0,8381739,0,8215086,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351294,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706457,,mES_ai2_s2_cell68,mES_ai2_s2_cell68,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,68, -4,8215087,ERS351295,,GCTACGCT,ACTGCATA,,qPCR only,GCTACGCTACTGCATA,,,,,,,0,0,8381739,0,8215087,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351295,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706458,,mES_ai2_s2_cell69,mES_ai2_s2_cell69,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,69, -4,8215088,ERS351296,,CGAGGCTG,ACTGCATA,,qPCR only,CGAGGCTGACTGCATA,,,,,,,0,0,8381739,0,8215088,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351296,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706459,,mES_ai2_s2_cell70,mES_ai2_s2_cell70,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,70, -4,8215089,ERS351297,,AAGAGGCA,ACTGCATA,,qPCR only,AAGAGGCAACTGCATA,,,,,,,0,0,8381739,0,8215089,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351297,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706460,,mES_ai2_s2_cell71,mES_ai2_s2_cell71,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,71, -4,8215090,ERS351291,,GTAGAGGA,ACTGCATA,,qPCR only,GTAGAGGAACTGCATA,,,,,,,0,0,8381739,0,8215090,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351291,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706461,,mES_ai2_s2_cell72,mES_ai2_s2_cell72,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,72, -4,8215091,ERS351299,,TAAGGCGA,AAGGAGTA,,qPCR only,TAAGGCGAAAGGAGTA,,,,,,,0,0,8381739,0,8215091,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351299,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706462,,mES_ai2_s2_cell73,mES_ai2_s2_cell73,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,73, -4,8215092,ERS351301,,CGTACTAG,AAGGAGTA,,qPCR only,CGTACTAGAAGGAGTA,,,,,,,0,0,8381739,0,8215092,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351301,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706463,,mES_ai2_s2_cell74,mES_ai2_s2_cell74,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,74, -4,8215093,ERS351302,,AGGCAGAA,AAGGAGTA,,qPCR only,AGGCAGAAAAGGAGTA,,,,,,,0,0,8381739,0,8215093,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351302,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706464,,mES_ai2_s2_cell75,mES_ai2_s2_cell75,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,75, -4,8215094,ERS351303,,TCCTGAGC,AAGGAGTA,,qPCR only,TCCTGAGCAAGGAGTA,,,,,,,0,0,8381739,0,8215094,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351303,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706465,,mES_ai2_s2_cell76,mES_ai2_s2_cell76,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,76, -4,8215095,ERS351304,,GGACTCCT,AAGGAGTA,,qPCR only,GGACTCCTAAGGAGTA,,,,,,,0,0,8381739,0,8215095,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351304,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706466,,mES_ai2_s2_cell77,mES_ai2_s2_cell77,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,77, -4,8215096,ERS351305,,TAGGCATG,AAGGAGTA,,qPCR only,TAGGCATGAAGGAGTA,,,,,,,0,0,8381739,0,8215096,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351305,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706467,,mES_ai2_s2_cell78,mES_ai2_s2_cell78,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,78, -4,8215097,ERS351306,,CTCTCTAC,AAGGAGTA,,qPCR only,CTCTCTACAAGGAGTA,,,,,,,0,0,8381739,0,8215097,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351306,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706468,,mES_ai2_s2_cell79,mES_ai2_s2_cell79,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,79, -4,8215098,ERS351298,,CAGAGAGG,AAGGAGTA,,qPCR only,CAGAGAGGAAGGAGTA,,,,,,,0,0,8381739,0,8215098,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351298,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706469,,mES_ai2_s2_cell80,mES_ai2_s2_cell80,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,80, -4,8215099,ERS351300,,GCTACGCT,AAGGAGTA,,qPCR only,GCTACGCTAAGGAGTA,,,,,,,0,0,8381739,0,8215099,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351300,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706470,,mES_ai2_s2_cell81,mES_ai2_s2_cell81,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,81, -4,8215100,ERS351309,,CGAGGCTG,AAGGAGTA,,qPCR only,CGAGGCTGAAGGAGTA,,,,,,,0,0,8381739,0,8215100,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351309,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706471,,mES_ai2_s2_cell82,mES_ai2_s2_cell82,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,82, -4,8215101,ERS351310,,AAGAGGCA,AAGGAGTA,,qPCR only,AAGAGGCAAAGGAGTA,,,,,,,0,0,8381739,0,8215101,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351310,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706472,,mES_ai2_s2_cell83,mES_ai2_s2_cell83,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,83, -4,8215102,ERS351311,,GTAGAGGA,AAGGAGTA,,qPCR only,GTAGAGGAAAGGAGTA,,,,,,,0,0,8381739,0,8215102,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351311,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706473,,mES_ai2_s2_cell84,mES_ai2_s2_cell84,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,84, -4,8215103,ERS351312,,TAAGGCGA,CTAAGCCT,,qPCR only,TAAGGCGACTAAGCCT,,,,,,,0,0,8381739,0,8215103,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351312,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706474,,mES_ai2_s2_cell85,mES_ai2_s2_cell85,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,85, -4,8215104,ERS351313,,CGTACTAG,CTAAGCCT,,qPCR only,CGTACTAGCTAAGCCT,,,,,,,0,0,8381739,0,8215104,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351313,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706475,,mES_ai2_s2_cell86,mES_ai2_s2_cell86,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,86, -4,8215105,ERS351314,,AGGCAGAA,CTAAGCCT,,qPCR only,AGGCAGAACTAAGCCT,,,,,,,0,0,8381739,0,8215105,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351314,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706476,,mES_ai2_s2_cell87,mES_ai2_s2_cell87,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,87, -4,8215106,ERS351307,,TCCTGAGC,CTAAGCCT,,qPCR only,TCCTGAGCCTAAGCCT,,,,,,,0,0,8381739,0,8215106,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351307,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706477,,mES_ai2_s2_cell88,mES_ai2_s2_cell88,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,88, -4,8215107,ERS351308,,GGACTCCT,CTAAGCCT,,qPCR only,GGACTCCTCTAAGCCT,,,,,,,0,0,8381739,0,8215107,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351308,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706478,,mES_ai2_s2_cell89,mES_ai2_s2_cell89,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,89, -4,8215108,ERS351315,,TAGGCATG,CTAAGCCT,,qPCR only,TAGGCATGCTAAGCCT,,,,,,,0,0,8381739,0,8215108,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351315,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706479,,mES_ai2_s2_cell90,mES_ai2_s2_cell90,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,90, -4,8215109,ERS351316,,CTCTCTAC,CTAAGCCT,,qPCR only,CTCTCTACCTAAGCCT,,,,,,,0,0,8381739,0,8215109,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351316,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706480,,mES_ai2_s2_cell91,mES_ai2_s2_cell91,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,91, -4,8215110,ERS351317,,CAGAGAGG,CTAAGCCT,,qPCR only,CAGAGAGGCTAAGCCT,,,,,,,0,0,8381739,0,8215110,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351317,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706481,,mES_ai2_s2_cell92,mES_ai2_s2_cell92,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,92, -4,8215111,ERS351318,,GCTACGCT,CTAAGCCT,,qPCR only,GCTACGCTCTAAGCCT,,,,,,,0,0,8381739,0,8215111,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351318,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706482,,mES_ai2_s2_cell93,mES_ai2_s2_cell93,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,93, -4,8215112,ERS351319,,CGAGGCTG,CTAAGCCT,,qPCR only,CGAGGCTGCTAAGCCT,,,,,,,0,0,8381739,0,8215112,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351319,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706483,,mES_ai2_s2_cell94,mES_ai2_s2_cell94,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,94, -4,8215113,ERS351320,,AAGAGGCA,CTAAGCCT,,qPCR only,AAGAGGCACTAAGCCT,,,,,,,0,0,8381739,0,8215113,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351320,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706484,,mES_ai2_s2_cell95,mES_ai2_s2_cell95,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,95, -4,8215114,ERS351321,,GTAGAGGA,CTAAGCCT,,qPCR only,GTAGAGGACTAAGCCT,,,,,,,0,0,8381739,0,8215114,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351321,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706485,,mES_ai2_s2_cell96,mES_ai2_s2_cell96,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,96, -4,6200285,6946_4_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381739,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, -5,8269740,EGAN00001173643,,,,,No PCR,,,,,,,,0,0,8381740,0,8269740,Human,9606,S0814,standard,,from:300 to:500,EGAN00001173643,,Homo sapiens,0,,,PD14393b,1712041,,PD14393b_wg,PD14393b,,,168,EGAS00001000290,1,0,0,Wholegenome libraries will be prepared.,2239,MPN Whole Genomes,Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT),0,Myeloproliferative Disease Whole Genomes,, -6,8324592,ERS354532,,GAGATTCC,TAATCTTA,,Pre-quality controlled,GAGATTCCTAATCTTA,,,,,,,0,0,8381741,0,8324592,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354532,,Mus musculus,0,,RNA,,1694494,,T_BCM1_F4,RT_37,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,64, -6,8324593,ERS354533,,ATTCAGAA,TAATCTTA,,Pre-quality controlled,ATTCAGAATAATCTTA,,,,,,,0,0,8381741,0,8324593,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354533,,Mus musculus,0,,RNA,,1694495,,T_BCM1_F5,RT_38,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,65, -6,6200285,6946_6_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381741,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, -7,8324594,ERS354534,,GAGATTCC,CAGGACGT,,Pre-quality controlled,GAGATTCCCAGGACGT,,,,,,,0,0,8381742,0,8324594,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354534,,Mus musculus,0,,RNA,,1694496,,T_CBF1_G4,RT_39,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,76, -7,8324595,ERS354535,,ATTCAGAA,CAGGACGT,,Pre-quality controlled,ATTCAGAACAGGACGT,,,,,,,0,0,8381742,0,8324595,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354535,,Mus musculus,0,,RNA,,1694497,,T_CBF1_G5,RT_40,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,77, -7,6200285,6946_7_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381742,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, -8,8324596,ERS354536,,GAGATTCC,GTACTGAC,,Pre-quality controlled,GAGATTCCGTACTGAC,,,,,,,0,0,8381743,0,8324596,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354536,,Mus musculus,0,,RNA,,1694498,,T_CBM2_H4,RT_41,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,88, -8,8324597,ERS354537,,ATTCAGAA,GTACTGAC,,Pre-quality controlled,ATTCAGAAGTACTGAC,,,,,,,0,0,8381743,0,8324597,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354537,,Mus musculus,0,,RNA,,1694499,,T_CBM2_H5,RT_42,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,89, -8,6200285,6946_8_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381743,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,7809257,ERS323818,,,,,No PCR,,,,,,,,0,0,8381746,0,7809257,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323818,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660679,,SQSCP,Hc_4_BC4_P2_5046_340285,Haemonchus contortus MHco3%2F4.BC4(P2)-5046,Haemonchus_contortus (V1_21June13),,c46e1810-e8aa-11e2-aafd-68b59976a382,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +2,7809258,ERS323819,,,,Fox bait,No PCR,,,,,,,,0,0,8381744,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,SQSCP,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,c4fff7d0-e8aa-11e2-aafd-68b59976a382,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +3,7809258,ERS323819,,,,,No PCR,,,,,,,,0,0,8381745,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,SQSCP,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,c4fff7d0-e8aa-11e2-aafd-68b59976a382,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +4,8215019,ERS351213,,TAAGGCGA,TAGATCGC,,qPCR only,TAAGGCGATAGATCGC,,,,,,,0,0,8381739,0,8215019,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351213,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706390,,SQSCP,mES_ai2_s2_cell1,mES_ai2_s2_cell1,Mus_musculus (NCBIm37),,455b95c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,1, +4,8215020,ERS351214,,CGTACTAG,TAGATCGC,,qPCR only,CGTACTAGTAGATCGC,,,,,,,0,0,8381739,0,8215020,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351214,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706391,,SQSCP,mES_ai2_s2_cell2,mES_ai2_s2_cell2,Mus_musculus (NCBIm37),,456c5ea0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,2, +4,8215021,ERS351221,,AGGCAGAA,TAGATCGC,,qPCR only,AGGCAGAATAGATCGC,,,,,,,0,0,8381739,0,8215021,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351221,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706392,,SQSCP,mES_ai2_s2_cell3,mES_ai2_s2_cell3,Mus_musculus (NCBIm37),,457b2bb0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,3, +4,8215022,ERS351222,,TCCTGAGC,TAGATCGC,,qPCR only,TCCTGAGCTAGATCGC,,,,,,,0,0,8381739,0,8215022,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351222,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706393,,SQSCP,mES_ai2_s2_cell4,mES_ai2_s2_cell4,Mus_musculus (NCBIm37),,458a46e0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,4, +4,8215023,ERS351223,,GGACTCCT,TAGATCGC,,qPCR only,GGACTCCTTAGATCGC,,,,,,,0,0,8381739,0,8215023,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351223,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706394,,SQSCP,mES_ai2_s2_cell5,mES_ai2_s2_cell5,Mus_musculus (NCBIm37),,45adfb80-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,5, +4,8215024,ERS351224,,TAGGCATG,TAGATCGC,,qPCR only,TAGGCATGTAGATCGC,,,,,,,0,0,8381739,0,8215024,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351224,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706395,,SQSCP,mES_ai2_s2_cell6,mES_ai2_s2_cell6,Mus_musculus (NCBIm37),,45c5a230-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,6, +4,8215025,ERS351225,,CTCTCTAC,TAGATCGC,,qPCR only,CTCTCTACTAGATCGC,,,,,,,0,0,8381739,0,8215025,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351225,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706396,,SQSCP,mES_ai2_s2_cell7,mES_ai2_s2_cell7,Mus_musculus (NCBIm37),,45d97850-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,7, +4,8215026,ERS351218,,CAGAGAGG,TAGATCGC,,qPCR only,CAGAGAGGTAGATCGC,,,,,,,0,0,8381739,0,8215026,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351218,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706397,,SQSCP,mES_ai2_s2_cell8,mES_ai2_s2_cell8,Mus_musculus (NCBIm37),,45e44dc0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,8, +4,8215027,ERS351219,,GCTACGCT,TAGATCGC,,qPCR only,GCTACGCTTAGATCGC,,,,,,,0,0,8381739,0,8215027,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351219,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706398,,SQSCP,mES_ai2_s2_cell9,mES_ai2_s2_cell9,Mus_musculus (NCBIm37),,45f05bb0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,9, +4,8215028,ERS351220,,CGAGGCTG,TAGATCGC,,qPCR only,CGAGGCTGTAGATCGC,,,,,,,0,0,8381739,0,8215028,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351220,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706399,,SQSCP,mES_ai2_s2_cell10,mES_ai2_s2_cell10,Mus_musculus (NCBIm37),,45fc69a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,10, +4,8215029,ERS351235,,AAGAGGCA,TAGATCGC,,qPCR only,AAGAGGCATAGATCGC,,,,,,,0,0,8381739,0,8215029,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351235,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706400,,SQSCP,mES_ai2_s2_cell11,mES_ai2_s2_cell11,Mus_musculus (NCBIm37),,46082970-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,11, +4,8215030,ERS351237,,GTAGAGGA,TAGATCGC,,qPCR only,GTAGAGGATAGATCGC,,,,,,,0,0,8381739,0,8215030,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351237,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706401,,SQSCP,mES_ai2_s2_cell12,mES_ai2_s2_cell12,Mus_musculus (NCBIm37),,46137410-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,12, +4,8215031,ERS351238,,TAAGGCGA,CTCTCTAT,,qPCR only,TAAGGCGACTCTCTAT,,,,,,,0,0,8381739,0,8215031,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351238,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706402,,SQSCP,mES_ai2_s2_cell13,mES_ai2_s2_cell13,Mus_musculus (NCBIm37),,461e97a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,13, +4,8215032,ERS351239,,CGTACTAG,CTCTCTAT,,qPCR only,CGTACTAGCTCTCTAT,,,,,,,0,0,8381739,0,8215032,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351239,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706403,,SQSCP,mES_ai2_s2_cell14,mES_ai2_s2_cell14,Mus_musculus (NCBIm37),,462af3b0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,14, +4,8215033,ERS351241,,AGGCAGAA,CTCTCTAT,,qPCR only,AGGCAGAACTCTCTAT,,,,,,,0,0,8381739,0,8215033,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351241,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706404,,SQSCP,mES_ai2_s2_cell15,mES_ai2_s2_cell15,Mus_musculus (NCBIm37),,46388840-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,15, +4,8215034,ERS351226,,TCCTGAGC,CTCTCTAT,,qPCR only,TCCTGAGCCTCTCTAT,,,,,,,0,0,8381739,0,8215034,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351226,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706405,,SQSCP,mES_ai2_s2_cell16,mES_ai2_s2_cell16,Mus_musculus (NCBIm37),,46698350-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,16, +4,8215035,ERS351227,,GGACTCCT,CTCTCTAT,,qPCR only,GGACTCCTCTCTCTAT,,,,,,,0,0,8381739,0,8215035,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351227,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706406,,SQSCP,mES_ai2_s2_cell17,mES_ai2_s2_cell17,Mus_musculus (NCBIm37),,46826280-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,17, +4,8215036,ERS351234,,TAGGCATG,CTCTCTAT,,qPCR only,TAGGCATGCTCTCTAT,,,,,,,0,0,8381739,0,8215036,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351234,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706407,,SQSCP,mES_ai2_s2_cell18,mES_ai2_s2_cell18,Mus_musculus (NCBIm37),,4691a4c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,18, +4,8215037,ERS351236,,CTCTCTAC,CTCTCTAT,,qPCR only,CTCTCTACCTCTCTAT,,,,,,,0,0,8381739,0,8215037,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351236,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706408,,SQSCP,mES_ai2_s2_cell19,mES_ai2_s2_cell19,Mus_musculus (NCBIm37),,469e4ef0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,19, +4,8215038,ERS351247,,CAGAGAGG,CTCTCTAT,,qPCR only,CAGAGAGGCTCTCTAT,,,,,,,0,0,8381739,0,8215038,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351247,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706409,,SQSCP,mES_ai2_s2_cell20,mES_ai2_s2_cell20,Mus_musculus (NCBIm37),,46aaab00-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,20, +4,8215039,ERS351249,,GCTACGCT,CTCTCTAT,,qPCR only,GCTACGCTCTCTCTAT,,,,,,,0,0,8381739,0,8215039,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351249,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706410,,SQSCP,mES_ai2_s2_cell21,mES_ai2_s2_cell21,Mus_musculus (NCBIm37),,46b7ca60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,21, +4,8215040,ERS351251,,CGAGGCTG,CTCTCTAT,,qPCR only,CGAGGCTGCTCTCTAT,,,,,,,0,0,8381739,0,8215040,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351251,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706411,,SQSCP,mES_ai2_s2_cell22,mES_ai2_s2_cell22,Mus_musculus (NCBIm37),,46c58600-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,22, +4,8215041,ERS351252,,AAGAGGCA,CTCTCTAT,,qPCR only,AAGAGGCACTCTCTAT,,,,,,,0,0,8381739,0,8215041,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351252,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706412,,SQSCP,mES_ai2_s2_cell23,mES_ai2_s2_cell23,Mus_musculus (NCBIm37),,46d27e50-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,23, +4,8215042,ERS351242,,GTAGAGGA,CTCTCTAT,,qPCR only,GTAGAGGACTCTCTAT,,,,,,,0,0,8381739,0,8215042,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351242,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706413,,SQSCP,mES_ai2_s2_cell24,mES_ai2_s2_cell24,Mus_musculus (NCBIm37),,46e2aaf0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,24, +4,8215043,ERS351243,,TAAGGCGA,TATCCTCT,,qPCR only,TAAGGCGATATCCTCT,,,,,,,0,0,8381739,0,8215043,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351243,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706414,,SQSCP,mES_ai2_s2_cell25,mES_ai2_s2_cell25,Mus_musculus (NCBIm37),,46f65a00-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,25, +4,8215044,ERS351244,,CGTACTAG,TATCCTCT,,qPCR only,CGTACTAGTATCCTCT,,,,,,,0,0,8381739,0,8215044,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351244,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706415,,SQSCP,mES_ai2_s2_cell26,mES_ai2_s2_cell26,Mus_musculus (NCBIm37),,4708a980-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,26, +4,8215045,ERS351245,,AGGCAGAA,TATCCTCT,,qPCR only,AGGCAGAATATCCTCT,,,,,,,0,0,8381739,0,8215045,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351245,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706416,,SQSCP,mES_ai2_s2_cell27,mES_ai2_s2_cell27,Mus_musculus (NCBIm37),,4718d620-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,27, +4,8215046,ERS351248,,TCCTGAGC,TATCCTCT,,qPCR only,TCCTGAGCTATCCTCT,,,,,,,0,0,8381739,0,8215046,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351248,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706417,,SQSCP,mES_ai2_s2_cell28,mES_ai2_s2_cell28,Mus_musculus (NCBIm37),,47277c20-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,28, +4,8215047,ERS351250,,GGACTCCT,TATCCTCT,,qPCR only,GGACTCCTTATCCTCT,,,,,,,0,0,8381739,0,8215047,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351250,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706418,,SQSCP,mES_ai2_s2_cell29,mES_ai2_s2_cell29,Mus_musculus (NCBIm37),,4734c290-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,29, +4,8215048,ERS351260,,TAGGCATG,TATCCTCT,,qPCR only,TAGGCATGTATCCTCT,,,,,,,0,0,8381739,0,8215048,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351260,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706419,,SQSCP,mES_ai2_s2_cell30,mES_ai2_s2_cell30,Mus_musculus (NCBIm37),,47427e30-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,30, +4,8215049,ERS351261,,CTCTCTAC,TATCCTCT,,qPCR only,CTCTCTACTATCCTCT,,,,,,,0,0,8381739,0,8215049,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351261,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706420,,SQSCP,mES_ai2_s2_cell31,mES_ai2_s2_cell31,Mus_musculus (NCBIm37),,475b5d60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,31, +4,8215050,ERS351254,,CAGAGAGG,TATCCTCT,,qPCR only,CAGAGAGGTATCCTCT,,,,,,,0,0,8381739,0,8215050,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351254,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706421,,SQSCP,mES_ai2_s2_cell32,mES_ai2_s2_cell32,Mus_musculus (NCBIm37),,476b8a00-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,32, +4,8215051,ERS351255,,GCTACGCT,TATCCTCT,,qPCR only,GCTACGCTTATCCTCT,,,,,,,0,0,8381739,0,8215051,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351255,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706422,,SQSCP,mES_ai2_s2_cell33,mES_ai2_s2_cell33,Mus_musculus (NCBIm37),,477dd980-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,33, +4,8215052,ERS351256,,CGAGGCTG,TATCCTCT,,qPCR only,CGAGGCTGTATCCTCT,,,,,,,0,0,8381739,0,8215052,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351256,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706423,,SQSCP,mES_ai2_s2_cell34,mES_ai2_s2_cell34,Mus_musculus (NCBIm37),,478ea260-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,34, +4,8215053,ERS351257,,AAGAGGCA,TATCCTCT,,qPCR only,AAGAGGCATATCCTCT,,,,,,,0,0,8381739,0,8215053,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351257,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706424,,SQSCP,mES_ai2_s2_cell35,mES_ai2_s2_cell35,Mus_musculus (NCBIm37),,47a314c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,35, +4,8215054,ERS351258,,GTAGAGGA,TATCCTCT,,qPCR only,GTAGAGGATATCCTCT,,,,,,,0,0,8381739,0,8215054,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351258,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706425,,SQSCP,mES_ai2_s2_cell36,mES_ai2_s2_cell36,Mus_musculus (NCBIm37),,47b6c3d0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,36, +4,8215055,ERS351259,,TAAGGCGA,AGAGTAGA,,qPCR only,TAAGGCGAAGAGTAGA,,,,,,,0,0,8381739,0,8215055,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351259,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706426,,SQSCP,mES_ai2_s2_cell37,mES_ai2_s2_cell37,Mus_musculus (NCBIm37),,47ce1c60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,37, +4,8215056,ERS351269,,CGTACTAG,AGAGTAGA,,qPCR only,CGTACTAGAGAGTAGA,,,,,,,0,0,8381739,0,8215056,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351269,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706427,,SQSCP,mES_ai2_s2_cell38,mES_ai2_s2_cell38,Mus_musculus (NCBIm37),,47e2b5d0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,38, +4,8215057,ERS351271,,AGGCAGAA,AGAGTAGA,,qPCR only,AGGCAGAAAGAGTAGA,,,,,,,0,0,8381739,0,8215057,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351271,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706428,,SQSCP,mES_ai2_s2_cell39,mES_ai2_s2_cell39,Mus_musculus (NCBIm37),,47f182e0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,39, +4,8215058,ERS351262,,TCCTGAGC,AGAGTAGA,,qPCR only,TCCTGAGCAGAGTAGA,,,,,,,0,0,8381739,0,8215058,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351262,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706429,,SQSCP,mES_ai2_s2_cell40,mES_ai2_s2_cell40,Mus_musculus (NCBIm37),,48064360-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,40, +4,8215059,ERS351263,,GGACTCCT,AGAGTAGA,,qPCR only,GGACTCCTAGAGTAGA,,,,,,,0,0,8381739,0,8215059,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351263,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706430,,SQSCP,mES_ai2_s2_cell41,mES_ai2_s2_cell41,Mus_musculus (NCBIm37),,48181db0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,41, +4,8215060,ERS351264,,TAGGCATG,AGAGTAGA,,qPCR only,TAGGCATGAGAGTAGA,,,,,,,0,0,8381739,0,8215060,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351264,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706431,,SQSCP,mES_ai2_s2_cell42,mES_ai2_s2_cell42,Mus_musculus (NCBIm37),,4827fc30-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,42, +4,8215061,ERS351266,,CTCTCTAC,AGAGTAGA,,qPCR only,CTCTCTACAGAGTAGA,,,,,,,0,0,8381739,0,8215061,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351266,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706432,,SQSCP,mES_ai2_s2_cell43,mES_ai2_s2_cell43,Mus_musculus (NCBIm37),,48345840-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,43, +4,8215062,ERS351267,,CAGAGAGG,AGAGTAGA,,qPCR only,CAGAGAGGAGAGTAGA,,,,,,,0,0,8381739,0,8215062,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351267,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706433,,SQSCP,mES_ai2_s2_cell44,mES_ai2_s2_cell44,Mus_musculus (NCBIm37),,48415090-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,44, +4,8215063,ERS351268,,GCTACGCT,AGAGTAGA,,qPCR only,GCTACGCTAGAGTAGA,,,,,,,0,0,8381739,0,8215063,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351268,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706434,,SQSCP,mES_ai2_s2_cell45,mES_ai2_s2_cell45,Mus_musculus (NCBIm37),,484dd3b0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,45, +4,8215064,ERS351270,,CGAGGCTG,AGAGTAGA,,qPCR only,CGAGGCTGAGAGTAGA,,,,,,,0,0,8381739,0,8215064,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351270,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706435,,SQSCP,mES_ai2_s2_cell46,mES_ai2_s2_cell46,Mus_musculus (NCBIm37),,485a7de0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,46, +4,8215065,ERS351272,,AAGAGGCA,AGAGTAGA,,qPCR only,AAGAGGCAAGAGTAGA,,,,,,,0,0,8381739,0,8215065,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351272,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706436,,SQSCP,mES_ai2_s2_cell47,mES_ai2_s2_cell47,Mus_musculus (NCBIm37),,48670100-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,47, +4,8215066,ERS351273,,GTAGAGGA,AGAGTAGA,,qPCR only,GTAGAGGAAGAGTAGA,,,,,,,0,0,8381739,0,8215066,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351273,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706437,,SQSCP,mES_ai2_s2_cell48,mES_ai2_s2_cell48,Mus_musculus (NCBIm37),,48733600-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,48, +4,8215067,ERS351275,,TAAGGCGA,GTAAGGAG,,qPCR only,TAAGGCGAGTAAGGAG,,,,,,,0,0,8381739,0,8215067,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351275,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706438,,SQSCP,mES_ai2_s2_cell49,mES_ai2_s2_cell49,Mus_musculus (NCBIm37),,48807c70-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,49, +4,8215068,ERS351277,,CGTACTAG,GTAAGGAG,,qPCR only,CGTACTAGGTAAGGAG,,,,,,,0,0,8381739,0,8215068,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351277,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706439,,SQSCP,mES_ai2_s2_cell50,mES_ai2_s2_cell50,Mus_musculus (NCBIm37),,488cd880-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,50, +4,8215069,ERS351278,,AGGCAGAA,GTAAGGAG,,qPCR only,AGGCAGAAGTAAGGAG,,,,,,,0,0,8381739,0,8215069,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351278,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706440,,SQSCP,mES_ai2_s2_cell51,mES_ai2_s2_cell51,Mus_musculus (NCBIm37),,489982b0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,51, +4,8215070,ERS351279,,TCCTGAGC,GTAAGGAG,,qPCR only,TCCTGAGCGTAAGGAG,,,,,,,0,0,8381739,0,8215070,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351279,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706441,,SQSCP,mES_ai2_s2_cell52,mES_ai2_s2_cell52,Mus_musculus (NCBIm37),,48a5dec0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,52, +4,8215071,ERS351280,,GGACTCCT,GTAAGGAG,,qPCR only,GGACTCCTGTAAGGAG,,,,,,,0,0,8381739,0,8215071,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351280,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706442,,SQSCP,mES_ai2_s2_cell53,mES_ai2_s2_cell53,Mus_musculus (NCBIm37),,48b3c170-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,53, +4,8215072,ERS351281,,TAGGCATG,GTAAGGAG,,qPCR only,TAGGCATGGTAAGGAG,,,,,,,0,0,8381739,0,8215072,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351281,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706443,,SQSCP,mES_ai2_s2_cell54,mES_ai2_s2_cell54,Mus_musculus (NCBIm37),,48c06ba0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,54, +4,8215073,ERS351282,,CTCTCTAC,GTAAGGAG,,qPCR only,CTCTCTACGTAAGGAG,,,,,,,0,0,8381739,0,8215073,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351282,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706444,,SQSCP,mES_ai2_s2_cell55,mES_ai2_s2_cell55,Mus_musculus (NCBIm37),,48d468d0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,55, +4,8215074,ERS351274,,CAGAGAGG,GTAAGGAG,,qPCR only,CAGAGAGGGTAAGGAG,,,,,,,0,0,8381739,0,8215074,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351274,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706445,,SQSCP,mES_ai2_s2_cell56,mES_ai2_s2_cell56,Mus_musculus (NCBIm37),,48e38400-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,56, +4,8215075,ERS351276,,GCTACGCT,GTAAGGAG,,qPCR only,GCTACGCTGTAAGGAG,,,,,,,0,0,8381739,0,8215075,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351276,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706446,,SQSCP,mES_ai2_s2_cell57,mES_ai2_s2_cell57,Mus_musculus (NCBIm37),,48f3b0a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,57, +4,8215076,ERS351285,,CGAGGCTG,GTAAGGAG,,qPCR only,CGAGGCTGGTAAGGAG,,,,,,,0,0,8381739,0,8215076,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351285,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706447,,SQSCP,mES_ai2_s2_cell58,mES_ai2_s2_cell58,Mus_musculus (NCBIm37),,49034100-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,58, +4,8215077,ERS351286,,AAGAGGCA,GTAAGGAG,,qPCR only,AAGAGGCAGTAAGGAG,,,,,,,0,0,8381739,0,8215077,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351286,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706448,,SQSCP,mES_ai2_s2_cell59,mES_ai2_s2_cell59,Mus_musculus (NCBIm37),,49134690-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,59, +4,8215078,ERS351287,,GTAGAGGA,GTAAGGAG,,qPCR only,GTAGAGGAGTAAGGAG,,,,,,,0,0,8381739,0,8215078,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351287,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706449,,SQSCP,mES_ai2_s2_cell60,mES_ai2_s2_cell60,Mus_musculus (NCBIm37),,4923e860-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,60, +4,8215079,ERS351288,,TAAGGCGA,ACTGCATA,,qPCR only,TAAGGCGAACTGCATA,,,,,,,0,0,8381739,0,8215079,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351288,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706450,,SQSCP,mES_ai2_s2_cell61,mES_ai2_s2_cell61,Mus_musculus (NCBIm37),,493f1180-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,61, +4,8215080,ERS351289,,CGTACTAG,ACTGCATA,,qPCR only,CGTACTAGACTGCATA,,,,,,,0,0,8381739,0,8215080,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351289,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706451,,SQSCP,mES_ai2_s2_cell62,mES_ai2_s2_cell62,Mus_musculus (NCBIm37),,49566a10-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,62, +4,8215081,ERS351290,,AGGCAGAA,ACTGCATA,,qPCR only,AGGCAGAAACTGCATA,,,,,,,0,0,8381739,0,8215081,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351290,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706452,,SQSCP,mES_ai2_s2_cell63,mES_ai2_s2_cell63,Mus_musculus (NCBIm37),,49692ec0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,63, +4,8215082,ERS351283,,TCCTGAGC,ACTGCATA,,qPCR only,TCCTGAGCACTGCATA,,,,,,,0,0,8381739,0,8215082,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351283,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706453,,SQSCP,mES_ai2_s2_cell64,mES_ai2_s2_cell64,Mus_musculus (NCBIm37),,497b7e40-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,64, +4,8215083,ERS351284,,GGACTCCT,ACTGCATA,,qPCR only,GGACTCCTACTGCATA,,,,,,,0,0,8381739,0,8215083,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351284,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706454,,SQSCP,mES_ai2_s2_cell65,mES_ai2_s2_cell65,Mus_musculus (NCBIm37),,499324f0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,65, +4,8215084,ERS351292,,TAGGCATG,ACTGCATA,,qPCR only,TAGGCATGACTGCATA,,,,,,,0,0,8381739,0,8215084,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351292,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706455,,SQSCP,mES_ai2_s2_cell66,mES_ai2_s2_cell66,Mus_musculus (NCBIm37),,49a5e9a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,66, +4,8215085,ERS351293,,CTCTCTAC,ACTGCATA,,qPCR only,CTCTCTACACTGCATA,,,,,,,0,0,8381739,0,8215085,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351293,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706456,,SQSCP,mES_ai2_s2_cell67,mES_ai2_s2_cell67,Mus_musculus (NCBIm37),,49b92380-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,67, +4,8215086,ERS351294,,CAGAGAGG,ACTGCATA,,qPCR only,CAGAGAGGACTGCATA,,,,,,,0,0,8381739,0,8215086,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351294,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706457,,SQSCP,mES_ai2_s2_cell68,mES_ai2_s2_cell68,Mus_musculus (NCBIm37),,49cc8470-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,68, +4,8215087,ERS351295,,GCTACGCT,ACTGCATA,,qPCR only,GCTACGCTACTGCATA,,,,,,,0,0,8381739,0,8215087,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351295,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706458,,SQSCP,mES_ai2_s2_cell69,mES_ai2_s2_cell69,Mus_musculus (NCBIm37),,49df9740-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,69, +4,8215088,ERS351296,,CGAGGCTG,ACTGCATA,,qPCR only,CGAGGCTGACTGCATA,,,,,,,0,0,8381739,0,8215088,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351296,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706459,,SQSCP,mES_ai2_s2_cell70,mES_ai2_s2_cell70,Mus_musculus (NCBIm37),,49f2aa10-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,70, +4,8215089,ERS351297,,AAGAGGCA,ACTGCATA,,qPCR only,AAGAGGCAACTGCATA,,,,,,,0,0,8381739,0,8215089,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351297,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706460,,SQSCP,mES_ai2_s2_cell71,mES_ai2_s2_cell71,Mus_musculus (NCBIm37),,4a05bce0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,71, +4,8215090,ERS351291,,GTAGAGGA,ACTGCATA,,qPCR only,GTAGAGGAACTGCATA,,,,,,,0,0,8381739,0,8215090,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351291,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706461,,SQSCP,mES_ai2_s2_cell72,mES_ai2_s2_cell72,Mus_musculus (NCBIm37),,4a2308e0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,72, +4,8215091,ERS351299,,TAAGGCGA,AAGGAGTA,,qPCR only,TAAGGCGAAAGGAGTA,,,,,,,0,0,8381739,0,8215091,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351299,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706462,,SQSCP,mES_ai2_s2_cell73,mES_ai2_s2_cell73,Mus_musculus (NCBIm37),,4a388cb0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,73, +4,8215092,ERS351301,,CGTACTAG,AAGGAGTA,,qPCR only,CGTACTAGAAGGAGTA,,,,,,,0,0,8381739,0,8215092,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351301,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706463,,SQSCP,mES_ai2_s2_cell74,mES_ai2_s2_cell74,Mus_musculus (NCBIm37),,4a4d2620-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,74, +4,8215093,ERS351302,,AGGCAGAA,AAGGAGTA,,qPCR only,AGGCAGAAAAGGAGTA,,,,,,,0,0,8381739,0,8215093,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351302,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706464,,SQSCP,mES_ai2_s2_cell75,mES_ai2_s2_cell75,Mus_musculus (NCBIm37),,4a631f20-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,75, +4,8215094,ERS351303,,TCCTGAGC,AAGGAGTA,,qPCR only,TCCTGAGCAAGGAGTA,,,,,,,0,0,8381739,0,8215094,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351303,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706465,,SQSCP,mES_ai2_s2_cell76,mES_ai2_s2_cell76,Mus_musculus (NCBIm37),,4a7c4c70-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,76, +4,8215095,ERS351304,,GGACTCCT,AAGGAGTA,,qPCR only,GGACTCCTAAGGAGTA,,,,,,,0,0,8381739,0,8215095,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351304,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706466,,SQSCP,mES_ai2_s2_cell77,mES_ai2_s2_cell77,Mus_musculus (NCBIm37),,4a8b67a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,77, +4,8215096,ERS351305,,TAGGCATG,AAGGAGTA,,qPCR only,TAGGCATGAAGGAGTA,,,,,,,0,0,8381739,0,8215096,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351305,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706467,,SQSCP,mES_ai2_s2_cell78,mES_ai2_s2_cell78,Mus_musculus (NCBIm37),,4aa27210-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,78, +4,8215097,ERS351306,,CTCTCTAC,AAGGAGTA,,qPCR only,CTCTCTACAAGGAGTA,,,,,,,0,0,8381739,0,8215097,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351306,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706468,,SQSCP,mES_ai2_s2_cell79,mES_ai2_s2_cell79,Mus_musculus (NCBIm37),,4aaf4350-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,79, +4,8215098,ERS351298,,CAGAGAGG,AAGGAGTA,,qPCR only,CAGAGAGGAAGGAGTA,,,,,,,0,0,8381739,0,8215098,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351298,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706469,,SQSCP,mES_ai2_s2_cell80,mES_ai2_s2_cell80,Mus_musculus (NCBIm37),,4abab500-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,80, +4,8215099,ERS351300,,GCTACGCT,AAGGAGTA,,qPCR only,GCTACGCTAAGGAGTA,,,,,,,0,0,8381739,0,8215099,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351300,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706470,,SQSCP,mES_ai2_s2_cell81,mES_ai2_s2_cell81,Mus_musculus (NCBIm37),,4ac78640-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,81, +4,8215100,ERS351309,,CGAGGCTG,AAGGAGTA,,qPCR only,CGAGGCTGAAGGAGTA,,,,,,,0,0,8381739,0,8215100,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351309,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706471,,SQSCP,mES_ai2_s2_cell82,mES_ai2_s2_cell82,Mus_musculus (NCBIm37),,4ad4f3c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,82, +4,8215101,ERS351310,,AAGAGGCA,AAGGAGTA,,qPCR only,AAGAGGCAAAGGAGTA,,,,,,,0,0,8381739,0,8215101,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351310,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706472,,SQSCP,mES_ai2_s2_cell83,mES_ai2_s2_cell83,Mus_musculus (NCBIm37),,4ae2d670-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,83, +4,8215102,ERS351311,,GTAGAGGA,AAGGAGTA,,qPCR only,GTAGAGGAAAGGAGTA,,,,,,,0,0,8381739,0,8215102,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351311,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706473,,SQSCP,mES_ai2_s2_cell84,mES_ai2_s2_cell84,Mus_musculus (NCBIm37),,4affad40-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,84, +4,8215103,ERS351312,,TAAGGCGA,CTAAGCCT,,qPCR only,TAAGGCGACTAAGCCT,,,,,,,0,0,8381739,0,8215103,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351312,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706474,,SQSCP,mES_ai2_s2_cell85,mES_ai2_s2_cell85,Mus_musculus (NCBIm37),,4b109d30-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,85, +4,8215104,ERS351313,,CGTACTAG,CTAAGCCT,,qPCR only,CGTACTAGCTAAGCCT,,,,,,,0,0,8381739,0,8215104,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351313,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706475,,SQSCP,mES_ai2_s2_cell86,mES_ai2_s2_cell86,Mus_musculus (NCBIm37),,4b266f20-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,86, +4,8215105,ERS351314,,AGGCAGAA,CTAAGCCT,,qPCR only,AGGCAGAACTAAGCCT,,,,,,,0,0,8381739,0,8215105,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351314,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706476,,SQSCP,mES_ai2_s2_cell87,mES_ai2_s2_cell87,Mus_musculus (NCBIm37),,4b395ae0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,87, +4,8215106,ERS351307,,TCCTGAGC,CTAAGCCT,,qPCR only,TCCTGAGCCTAAGCCT,,,,,,,0,0,8381739,0,8215106,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351307,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706477,,SQSCP,mES_ai2_s2_cell88,mES_ai2_s2_cell88,Mus_musculus (NCBIm37),,4b4c94c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,88, +4,8215107,ERS351308,,GGACTCCT,CTAAGCCT,,qPCR only,GGACTCCTCTAAGCCT,,,,,,,0,0,8381739,0,8215107,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351308,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706478,,SQSCP,mES_ai2_s2_cell89,mES_ai2_s2_cell89,Mus_musculus (NCBIm37),,4b60e010-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,89, +4,8215108,ERS351315,,TAGGCATG,CTAAGCCT,,qPCR only,TAGGCATGCTAAGCCT,,,,,,,0,0,8381739,0,8215108,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351315,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706479,,SQSCP,mES_ai2_s2_cell90,mES_ai2_s2_cell90,Mus_musculus (NCBIm37),,4b74b630-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,90, +4,8215109,ERS351316,,CTCTCTAC,CTAAGCCT,,qPCR only,CTCTCTACCTAAGCCT,,,,,,,0,0,8381739,0,8215109,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351316,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706480,,SQSCP,mES_ai2_s2_cell91,mES_ai2_s2_cell91,Mus_musculus (NCBIm37),,4b890180-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,91, +4,8215110,ERS351317,,CAGAGAGG,CTAAGCCT,,qPCR only,CAGAGAGGCTAAGCCT,,,,,,,0,0,8381739,0,8215110,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351317,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706481,,SQSCP,mES_ai2_s2_cell92,mES_ai2_s2_cell92,Mus_musculus (NCBIm37),,4b9cd7a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,92, +4,8215111,ERS351318,,GCTACGCT,CTAAGCCT,,qPCR only,GCTACGCTCTAAGCCT,,,,,,,0,0,8381739,0,8215111,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351318,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706482,,SQSCP,mES_ai2_s2_cell93,mES_ai2_s2_cell93,Mus_musculus (NCBIm37),,4bafea70-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,93, +4,8215112,ERS351319,,CGAGGCTG,CTAAGCCT,,qPCR only,CGAGGCTGCTAAGCCT,,,,,,,0,0,8381739,0,8215112,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351319,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706483,,SQSCP,mES_ai2_s2_cell94,mES_ai2_s2_cell94,Mus_musculus (NCBIm37),,4bc5bc60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,94, +4,8215113,ERS351320,,AAGAGGCA,CTAAGCCT,,qPCR only,AAGAGGCACTAAGCCT,,,,,,,0,0,8381739,0,8215113,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351320,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706484,,SQSCP,mES_ai2_s2_cell95,mES_ai2_s2_cell95,Mus_musculus (NCBIm37),,4bd8a820-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,95, +4,8215114,ERS351321,,GTAGAGGA,CTAAGCCT,,qPCR only,GTAGAGGACTAAGCCT,,,,,,,0,0,8381739,0,8215114,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351321,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706485,,SQSCP,mES_ai2_s2_cell96,mES_ai2_s2_cell96,Mus_musculus (NCBIm37),,4beb6cd0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,96, +4,6200285,6946_4_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381739,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +5,8269740,EGAN00001173643,,,,,No PCR,,,,,,,,0,0,8381740,0,8269740,Human,9606,S0814,standard,,from:300 to:500,EGAN00001173643,,Homo sapiens,0,,,PD14393b,1712041,,SQSCP,PD14393b_wg,PD14393b,,,b8754460-2b5e-11e3-bfef-68b59976a382,168,EGAS00001000290,1,0,0,Wholegenome libraries will be prepared.,2239,MPN Whole Genomes,Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT),0,Myeloproliferative Disease Whole Genomes,, +6,8324592,ERS354532,,GAGATTCC,TAATCTTA,,Pre-quality controlled,GAGATTCCTAATCTTA,,,,,,,0,0,8381741,0,8324592,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354532,,Mus musculus,0,,RNA,,1694494,,SQSCP,T_BCM1_F4,RT_37,,,62a06c60-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,64, +6,8324593,ERS354533,,ATTCAGAA,TAATCTTA,,Pre-quality controlled,ATTCAGAATAATCTTA,,,,,,,0,0,8381741,0,8324593,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354533,,Mus musculus,0,,RNA,,1694495,,SQSCP,T_BCM1_F5,RT_38,,,62ae4f10-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,65, +6,6200285,6946_6_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381741,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +7,8324594,ERS354534,,GAGATTCC,CAGGACGT,,Pre-quality controlled,GAGATTCCCAGGACGT,,,,,,,0,0,8381742,0,8324594,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354534,,Mus musculus,0,,RNA,,1694496,,SQSCP,T_CBF1_G4,RT_39,,,62baab20-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,76, +7,8324595,ERS354535,,ATTCAGAA,CAGGACGT,,Pre-quality controlled,ATTCAGAACAGGACGT,,,,,,,0,0,8381742,0,8324595,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354535,,Mus musculus,0,,RNA,,1694497,,SQSCP,T_CBF1_G5,RT_40,,,62c95120-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,77, +7,6200285,6946_7_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381742,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +8,8324596,ERS354536,,GAGATTCC,GTACTGAC,,Pre-quality controlled,GAGATTCCGTACTGAC,,,,,,,0,0,8381743,0,8324596,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354536,,Mus musculus,0,,RNA,,1694498,,SQSCP,T_CBM2_H4,RT_41,,,62d69790-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,88, +8,8324597,ERS354537,,ATTCAGAA,GTACTGAC,,Pre-quality controlled,ATTCAGAAGTACTGAC,,,,,,,0,0,8381743,0,8324597,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354537,,Mus musculus,0,,RNA,,1694499,,SQSCP,T_CBM2_H5,RT_42,,,62e64f00-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,89, +8,6200285,6946_8_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381743,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, diff --git a/t/data/samplesheet/6946_extended.csv b/t/data/samplesheet/6946_extended.csv index b2522a74..9b6facfa 100644 --- a/t/data/samplesheet/6946_extended.csv +++ b/t/data/samplesheet/6946_extended.csv @@ -1,14 +1,14 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Sample_ID,Sample_Name,GenomeFolder,Index,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -3789278,Salmonella pullorum,,ATCACGTT,,Standard,ATCACGTT,,,,,,,0,0,3789299,0,3789278,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289832,,sp200shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,1, -3789279,Bordetella Pertussis,,CGATGTTT,,Standard,CGATGTTT,,,,,,,0,0,3789299,0,3789279,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289833,,bp200shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,2, -3789280,Plasmodium Falciparum,,TTAGGCAT,,Standard,TTAGGCAT,,,,,,,0,0,3789299,0,3789280,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289834,,3D7200shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,3, -3789281,Homo sapiens,,TGACCACT,,Standard,TGACCACT,,,,,,,0,0,3789299,0,3789281,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,1,,genomic DNA,,1289835,,human200shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,4, -3789282,Salmonella pullorum,,ACAGTGGT,,Standard,ACAGTGGT,,,,,,,0,0,3789299,0,3789282,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289836,,sp300shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,5, -3789283,Bordetella Pertussis,,GCCAATGT,,Standard,GCCAATGT,,,,,,,0,0,3789299,0,3789283,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289837,,bp300shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,6, -3789284,Plasmodium Falciparum,,CAGATCTG,,Standard,CAGATCTG,,,,,,,0,0,3789299,0,3789284,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289838,,3D7300shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,7, -3789285,Homo sapiens,,ACTTGATG,,Standard,ACTTGATG,,,,,,,0,0,3789299,0,3789285,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289839,,human300shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,8, -3789286,Salmonella pullorum,,GATCAGCG,,Standard,GATCAGCG,,,,,,,0,0,3789299,0,3789286,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289840,,sp400shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,9, -3789287,Bordetella Pertussis,,TAGCTTGT,,Standard,TAGCTTGT,,,,,,,0,0,3789299,0,3789287,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289841,,bp400shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,10, -3789288,Plasmodium Falciparum,,GGCTACAG,,Standard,GGCTACAG,,,,,,,0,0,3789299,0,3789288,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289842,,3D7400shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,11, -3789289,Homo sapiens,,CTTGTACT,,Standard,CTTGTACT,,,,,,,0,0,3789299,0,3789289,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289843,,human400shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,12, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,Index,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +3789278,Salmonella pullorum,,ATCACGTT,,Standard,ATCACGTT,,,,,,,0,0,3789299,0,3789278,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289832,,SQSCP,sp200shear,Salmonella pullorum,Salmonella_pullorum (449_87),,b51b4966-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,1, +3789279,Bordetella Pertussis,,CGATGTTT,,Standard,CGATGTTT,,,,,,,0,0,3789299,0,3789279,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289833,,SQSCP,bp200shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,b5760fb8-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,2, +3789280,Plasmodium Falciparum,,TTAGGCAT,,Standard,TTAGGCAT,,,,,,,0,0,3789299,0,3789280,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289834,,SQSCP,3D7200shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,b589b0cc-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,3, +3789281,Homo sapiens,,TGACCACT,,Standard,TGACCACT,,,,,,,0,0,3789299,0,3789281,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,1,,genomic DNA,,1289835,,SQSCP,human200shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,b5e1b402-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,4, +3789282,Salmonella pullorum,,ACAGTGGT,,Standard,ACAGTGGT,,,,,,,0,0,3789299,0,3789282,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289836,,SQSCP,sp300shear,Salmonella pullorum,Salmonella_pullorum (449_87),,b5f4757e-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,5, +3789283,Bordetella Pertussis,,GCCAATGT,,Standard,GCCAATGT,,,,,,,0,0,3789299,0,3789283,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289837,,SQSCP,bp300shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,b6064740-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,6, +3789284,Plasmodium Falciparum,,CAGATCTG,,Standard,CAGATCTG,,,,,,,0,0,3789299,0,3789284,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289838,,SQSCP,3D7300shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,b65db606-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,7, +3789285,Homo sapiens,,ACTTGATG,,Standard,ACTTGATG,,,,,,,0,0,3789299,0,3789285,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289839,,SQSCP,human300shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,b6790546-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,8, +3789286,Salmonella pullorum,,GATCAGCG,,Standard,GATCAGCG,,,,,,,0,0,3789299,0,3789286,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289840,,SQSCP,sp400shear,Salmonella pullorum,Salmonella_pullorum (449_87),,b694245c-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,9, +3789287,Bordetella Pertussis,,TAGCTTGT,,Standard,TAGCTTGT,,,,,,,0,0,3789299,0,3789287,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289841,,SQSCP,bp400shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,b6ea25f0-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,10, +3789288,Plasmodium Falciparum,,GGCTACAG,,Standard,GGCTACAG,,,,,,,0,0,3789299,0,3789288,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289842,,SQSCP,3D7400shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,b6fb2f58-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,11, +3789289,Homo sapiens,,CTTGTACT,,Standard,CTTGTACT,,,,,,,0,0,3789299,0,3789289,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289843,,SQSCP,human400shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,b73a3702-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,12, diff --git a/t/data/samplesheet/7007_extended.csv b/t/data/samplesheet/7007_extended.csv index b50c7eaf..41ba8eaf 100644 --- a/t/data/samplesheet/7007_extended.csv +++ b/t/data/samplesheet/7007_extended.csv @@ -1,3 +1,3 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -3789277,ERS092590,,,qPCR only,,,,,,,,0,0,3911772,0,3789277,Strongyloides ratti,34506,S0702,standard,,from:300 to:400,ERS092590,,Strongyloides ratti,0,,,,1289830,,SriL3_66K_212889,Strongyloides ratti,Strongyloides_ratti (20100601),,,ERP001672,1,0,0,Strongyloides ratti is a common gastro-intestinal parasite of the rat.,521,Strongyloides ratti transcriptomics, ,0,Transcriptome sequencing of Strongyloides ratti,, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +3789277,ERS092590,,,qPCR only,,,,,,,,0,0,3911772,0,3789277,Strongyloides ratti,34506,S0702,standard,,from:300 to:400,ERS092590,,Strongyloides ratti,0,,,,1289830,,SQSCP,SriL3_66K_212889,Strongyloides ratti,Strongyloides_ratti (20100601),,673165ec-f8c6-11e0-8838-68b59976a382,,ERP001672,1,0,0,Strongyloides ratti is a common gastro-intestinal parasite of the rat.,521,Strongyloides ratti transcriptomics, ,0,Transcriptome sequencing of Strongyloides ratti,, diff --git a/t/data/samplesheet/data4merge.csv b/t/data/samplesheet/data4merge.csv new file mode 100644 index 00000000..4fbdc497 --- /dev/null +++ b/t/data/samplesheet/data4merge.csv @@ -0,0 +1,6 @@ +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,id_run,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863688,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,CLARITY,7592352,,,3547031,673165ec-f8c6-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +2,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863689,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,CLARITY,7592352,,,3547031,673165ec-f8c6-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +3,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863690,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,Traction,7592352,,,3547031,b6ea25f0-f8cc-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +4,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863691,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,Traction,7592352,,,3547031,b6ea25f0-f8cc-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, diff --git a/t/data/samplesheet/dual_index_extended_new.csv b/t/data/samplesheet/dual_index_extended_new.csv index e90b52e0..f3ea91fc 100644 --- a/t/data/samplesheet/dual_index_extended_new.csv +++ b/t/data/samplesheet/dual_index_extended_new.csv @@ -1,34 +1,34 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -27037064,EGAN00002490956,,CGTGACAC,TTATTGCG,,Standard,CGTGACAC,TTATTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037064,,9606,S4360,standard,,from:450 to:450,EGAN00002490956,Normal,Homo sapiens,0,,,PD41305k_99,4396647,,6133STDY8786628,PD41305k_99,,PD41305k_99,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,1, -27037100,EGAN00002490958,,ACTTAGAG,CTCCATAA,,Standard,ACTTAGAG,CTCCATAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037100,,9606,S4360,standard,,from:450 to:450,EGAN00002490958,Normal,Homo sapiens,0,,,PD41305k_102,4396650,,6133STDY8786631,PD41305k_102,,PD41305k_102,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,2, -27037112,EGAN00002490960,,TCAGGAAA,CCAAACCC,,Standard,TCAGGAAA,CCAAACCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037112,,9606,S4360,standard,,from:450 to:450,EGAN00002490960,Normal,Homo sapiens,0,,,PD41305k_103,4396651,,6133STDY8786632,PD41305k_103,,PD41305k_103,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,3, -27037089,EGAN00002490966,,CGTCACCA,CTTGTTAA,,Standard,CGTCACCA,CTTGTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037089,,9606,S4360,standard,,from:450 to:450,EGAN00002490966,Normal,Homo sapiens,0,,,PD41305k_109,4396657,,6133STDY8786638,PD41305k_109,,PD41305k_109,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,4, -27037101,EGAN00002490967,,GTGTTTCT,AAAGTGCG,,Standard,GTGTTTCT,AAAGTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037101,,9606,S4360,standard,,from:450 to:450,EGAN00002490967,Normal,Homo sapiens,0,,,PD41305k_110,4396658,,6133STDY8786639,PD41305k_110,,PD41305k_110,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,5, -27037113,EGAN00002490968,,GGCACTCA,AAGTACAG,,Standard,GGCACTCA,AAGTACAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037113,,9606,S4360,standard,,from:450 to:450,EGAN00002490968,Normal,Homo sapiens,0,,,PD41305k_111,4396659,,6133STDY8786640,PD41305k_111,,PD41305k_111,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,6, -27037125,EGAN00002490970,,GTCATCTT,GCGCGCTA,,Standard,GTCATCTT,GCGCGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037125,,9606,S4360,standard,,from:450 to:450,EGAN00002490970,Normal,Homo sapiens,0,,,PD41305k_112,4396660,,6133STDY8786641,PD41305k_112,,PD41305k_112,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,7, -27037090,EGAN00002490973,,AGAGCTTA,TATAAAGC,,Standard,AGAGCTTA,TATAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037090,,9606,S4360,standard,,from:450 to:450,EGAN00002490973,Normal,Homo sapiens,0,,,PD41305k_117,4396665,,6133STDY8786646,PD41305k_117,,PD41305k_117,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,8, -27037114,EGAN00002490976,,CTAAGTCC,TATCAAAG,,Standard,CTAAGTCC,TATCAAAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037114,,9606,S4360,standard,,from:450 to:450,EGAN00002490976,Normal,Homo sapiens,0,,,PD41305k_119,4396667,,6133STDY8786648,PD41305k_119,,PD41305k_119,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,9, -27037091,EGAN00002490982,,GATCTTGA,GTCCCGCA,,Standard,GATCTTGA,GTCCCGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037091,,9606,S4360,standard,,from:450 to:450,EGAN00002490982,Normal,Homo sapiens,0,,,PD41305k_125,4396673,,6133STDY8786654,PD41305k_125,,PD41305k_125,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,10, -27037056,EGAN00002491016,,GCGACTGA,CGCTTCAC,,Standard,GCGACTGA,CGCTTCAC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037056,,9606,S4360,standard,,from:450 to:450,EGAN00002491016,Normal,Homo sapiens,0,,,PD41305k_130,4396678,,6133STDY8786659,PD41305k_130,,PD41305k_130,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,11, -27037104,EGAN00002491020,,TCCGGATT,CACAAGGA,,Standard,TCCGGATT,CACAAGGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037104,,9606,S4360,standard,,from:450 to:450,EGAN00002491020,Normal,Homo sapiens,0,,,PD41305k_134,4396682,,6133STDY8786663,PD41305k_134,,PD41305k_134,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,12, -27037129,EGAN00002491021,,AACGACTG,GAAATTAT,,Standard,AACGACTG,GAAATTAT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037129,,9606,S4360,standard,,from:450 to:450,EGAN00002491021,Normal,Homo sapiens,0,,,PD41305k_136,4396684,,6133STDY8786665,PD41305k_136,,PD41305k_136,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,13, -27037105,EGAN00002491029,,CTCGTGTC,TAGAGATA,,Standard,CTCGTGTC,TAGAGATA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037105,,9606,S4360,standard,,from:450 to:450,EGAN00002491029,Normal,Homo sapiens,0,,,PD41305k_142,4396690,,6133STDY8786671,PD41305k_142,,PD41305k_142,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,14, -27037117,EGAN00002491028,,TGGCGGTC,AGCGTATT,,Standard,TGGCGGTC,AGCGTATT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037117,,9606,S4360,standard,,from:450 to:450,EGAN00002491028,Normal,Homo sapiens,0,,,PD41305k_143,4396691,,6133STDY8786672,PD41305k_143,,PD41305k_143,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,15, -27037058,EGAN00002491033,,TGATTTCC,ACTTCCGA,,Standard,TGATTTCC,ACTTCCGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037058,,9606,S4360,standard,,from:450 to:450,EGAN00002491033,Normal,Homo sapiens,0,,,PD41305k_146,4396694,,6133STDY8786675,PD41305k_146,,PD41305k_146,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,16, -27037094,EGAN00002491035,,TTTAAATG,ACGTTTAA,,Standard,TTTAAATG,ACGTTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037094,,9606,S4360,standard,,from:450 to:450,EGAN00002491035,Normal,Homo sapiens,0,,,PD41305k_149,4396697,,6133STDY8786678,PD41305k_149,,PD41305k_149,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,17, -27037106,EGAN00002491037,,ACCTGCGG,ACGCCGCG,,Standard,ACCTGCGG,ACGCCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037106,,9606,S4360,standard,,from:450 to:450,EGAN00002491037,Normal,Homo sapiens,0,,,PD41305k_150,4396698,,6133STDY8786679,PD41305k_150,,PD41305k_150,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,18, -27037047,EGAN00002491039,,GACCGCAG,GGTCCCTC,,Standard,GACCGCAG,GGTCCCTC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037047,,9606,S4360,standard,,from:450 to:450,EGAN00002491039,Normal,Homo sapiens,0,,,PD41305k_153,4396701,,6133STDY8786682,PD41305k_153,,PD41305k_153,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,19, -27037071,EGAN00002491041,,GTTTCATG,CAAACAAA,,Standard,GTTTCATG,CAAACAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037071,,9606,S4360,standard,,from:450 to:450,EGAN00002491041,Normal,Homo sapiens,0,,,PD41305k_155,4396703,,6133STDY8786684,PD41305k_155,,PD41305k_155,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,20, -27037083,EGAN00002491042,,AAACATCG,ACCAAAGC,,Standard,AAACATCG,ACCAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037083,,9606,S4360,standard,,from:450 to:450,EGAN00002491042,Normal,Homo sapiens,0,,,PD41305k_156,4396704,,6133STDY8786685,PD41305k_156,,PD41305k_156,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,21, -27037048,EGAN00002491047,,GCTGCGCT,CCGATAAA,,Standard,GCTGCGCT,CCGATAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037048,,9606,S4360,standard,,from:450 to:450,EGAN00002491047,Normal,Homo sapiens,0,,,PD41305k_161,4396709,,6133STDY8786690,PD41305k_161,,PD41305k_161,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,22, -27037072,EGAN00002491048,,TGTCAGCT,CGCCGCCC,,Standard,TGTCAGCT,CGCCGCCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037072,,9606,S4360,standard,,from:450 to:450,EGAN00002491048,Normal,Homo sapiens,0,,,PD41305k_163,4396711,,6133STDY8786692,PD41305k_163,,PD41305k_163,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,23, -27037084,EGAN00002490985,,CTCTCCGG,TGCCGGCA,,Standard,CTCTCCGG,TGCCGGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037084,,9606,S4360,standard,,from:450 to:450,EGAN00002490985,Normal,Homo sapiens,0,,,PD41305k_164,4396712,,6133STDY8786693,PD41305k_164,,PD41305k_164,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,24, -27037134,EGAN00002490989,,AGAGTTAC,GATGGCTA,,Standard,AGAGTTAC,GATGGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037134,,9606,S4360,standard,,from:450 to:450,EGAN00002490989,Normal,Homo sapiens,0,,,PD41305k_168,4396716,,6133STDY8786697,PD41305k_168,,PD41305k_168,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,25, -27037061,EGAN00002490991,,CTCTTTAT,AAGCTCCG,,Standard,CTCTTTAT,AAGCTCCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037061,,9606,S4360,standard,,from:450 to:450,EGAN00002490991,Normal,Homo sapiens,0,,,PD41305k_170,4396718,,6133STDY8786699,PD41305k_170,,PD41305k_170,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,26, -27037073,EGAN00002490992,,AGAGAGCC,ATAGGCAA,,Standard,AGAGAGCC,ATAGGCAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037073,,9606,S4360,standard,,from:450 to:450,EGAN00002490992,Normal,Homo sapiens,0,,,PD41305k_171,4396719,,6133STDY8786700,PD41305k_171,,PD41305k_171,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,27, -27037085,EGAN00002490993,,CATCCACT,CCGGTGCC,,Standard,CATCCACT,CCGGTGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037085,,9606,S4360,standard,,from:450 to:450,EGAN00002490993,Normal,Homo sapiens,0,,,PD41305k_172,4396720,,6133STDY8786701,PD41305k_172,,PD41305k_172,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,28, -27037086,EGAN00002491001,,CATTCTTC,TAACCGCG,,Standard,CATTCTTC,TAACCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037086,,9606,S4360,standard,,from:450 to:450,EGAN00002491001,Normal,Homo sapiens,0,,,PD41305k_180,4396728,,6133STDY8786709,PD41305k_180,,PD41305k_180,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,29, -27037098,EGAN00002491002,,CTCGACGT,GAAGAGCC,,Standard,CTCGACGT,GAAGAGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037098,,9606,S4360,standard,,from:450 to:450,EGAN00002491002,Normal,Homo sapiens,0,,,PD41305k_181,4396729,,6133STDY8786710,PD41305k_181,,PD41305k_181,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,30, -27037110,EGAN00002491003,,AGTTGCAA,ATCCTGAG,,Standard,AGTTGCAA,ATCCTGAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037110,,9606,S4360,standard,,from:450 to:450,EGAN00002491003,Normal,Homo sapiens,0,,,PD41305k_182,4396730,,6133STDY8786711,PD41305k_182,,PD41305k_182,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,31, -27037051,EGAN00002491009,,GTAAGATG,AAAGGCTG,,Standard,GTAAGATG,AAAGGCTG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037051,,9606,S4360,standard,,from:450 to:450,EGAN00002491009,Normal,Homo sapiens,0,,,PD41305k_185,4396733,,6133STDY8786714,PD41305k_185,,PD41305k_185,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,32, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +27037064,EGAN00002490956,,CGTGACAC,TTATTGCG,,Standard,CGTGACAC,TTATTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037064,,9606,S4360,standard,,from:450 to:450,EGAN00002490956,Normal,Homo sapiens,0,,,PD41305k_99,4396647,,SQSCP,6133STDY8786628,PD41305k_99,,PD41305k_99,95b1bf0a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,1, +27037100,EGAN00002490958,,ACTTAGAG,CTCCATAA,,Standard,ACTTAGAG,CTCCATAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037100,,9606,S4360,standard,,from:450 to:450,EGAN00002490958,Normal,Homo sapiens,0,,,PD41305k_102,4396650,,SQSCP,6133STDY8786631,PD41305k_102,,PD41305k_102,95d35430-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,2, +27037112,EGAN00002490960,,TCAGGAAA,CCAAACCC,,Standard,TCAGGAAA,CCAAACCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037112,,9606,S4360,standard,,from:450 to:450,EGAN00002490960,Normal,Homo sapiens,0,,,PD41305k_103,4396651,,SQSCP,6133STDY8786632,PD41305k_103,,PD41305k_103,95daa3b6-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,3, +27037089,EGAN00002490966,,CGTCACCA,CTTGTTAA,,Standard,CGTCACCA,CTTGTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037089,,9606,S4360,standard,,from:450 to:450,EGAN00002490966,Normal,Homo sapiens,0,,,PD41305k_109,4396657,,SQSCP,6133STDY8786638,PD41305k_109,,PD41305k_109,960f6682-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,4, +27037101,EGAN00002490967,,GTGTTTCT,AAAGTGCG,,Standard,GTGTTTCT,AAAGTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037101,,9606,S4360,standard,,from:450 to:450,EGAN00002490967,Normal,Homo sapiens,0,,,PD41305k_110,4396658,,SQSCP,6133STDY8786639,PD41305k_110,,PD41305k_110,9616e9ac-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,5, +27037113,EGAN00002490968,,GGCACTCA,AAGTACAG,,Standard,GGCACTCA,AAGTACAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037113,,9606,S4360,standard,,from:450 to:450,EGAN00002490968,Normal,Homo sapiens,0,,,PD41305k_111,4396659,,SQSCP,6133STDY8786640,PD41305k_111,,PD41305k_111,9625221a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,6, +27037125,EGAN00002490970,,GTCATCTT,GCGCGCTA,,Standard,GTCATCTT,GCGCGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037125,,9606,S4360,standard,,from:450 to:450,EGAN00002490970,Normal,Homo sapiens,0,,,PD41305k_112,4396660,,SQSCP,6133STDY8786641,PD41305k_112,,PD41305k_112,962f00aa-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,7, +27037090,EGAN00002490973,,AGAGCTTA,TATAAAGC,,Standard,AGAGCTTA,TATAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037090,,9606,S4360,standard,,from:450 to:450,EGAN00002490973,Normal,Homo sapiens,0,,,PD41305k_117,4396665,,SQSCP,6133STDY8786646,PD41305k_117,,PD41305k_117,966a452a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,8, +27037114,EGAN00002490976,,CTAAGTCC,TATCAAAG,,Standard,CTAAGTCC,TATCAAAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037114,,9606,S4360,standard,,from:450 to:450,EGAN00002490976,Normal,Homo sapiens,0,,,PD41305k_119,4396667,,SQSCP,6133STDY8786648,PD41305k_119,,PD41305k_119,969cb118-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,9, +27037091,EGAN00002490982,,GATCTTGA,GTCCCGCA,,Standard,GATCTTGA,GTCCCGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037091,,9606,S4360,standard,,from:450 to:450,EGAN00002490982,Normal,Homo sapiens,0,,,PD41305k_125,4396673,,SQSCP,6133STDY8786654,PD41305k_125,,PD41305k_125,96ce2b9e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,10, +27037056,EGAN00002491016,,GCGACTGA,CGCTTCAC,,Standard,GCGACTGA,CGCTTCAC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037056,,9606,S4360,standard,,from:450 to:450,EGAN00002491016,Normal,Homo sapiens,0,,,PD41305k_130,4396678,,SQSCP,6133STDY8786659,PD41305k_130,,PD41305k_130,96ff0ba6-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,11, +27037104,EGAN00002491020,,TCCGGATT,CACAAGGA,,Standard,TCCGGATT,CACAAGGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037104,,9606,S4360,standard,,from:450 to:450,EGAN00002491020,Normal,Homo sapiens,0,,,PD41305k_134,4396682,,SQSCP,6133STDY8786663,PD41305k_134,,PD41305k_134,97264b8a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,12, +27037129,EGAN00002491021,,AACGACTG,GAAATTAT,,Standard,AACGACTG,GAAATTAT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037129,,9606,S4360,standard,,from:450 to:450,EGAN00002491021,Normal,Homo sapiens,0,,,PD41305k_136,4396684,,SQSCP,6133STDY8786665,PD41305k_136,,PD41305k_136,973999ce-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,13, +27037105,EGAN00002491029,,CTCGTGTC,TAGAGATA,,Standard,CTCGTGTC,TAGAGATA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037105,,9606,S4360,standard,,from:450 to:450,EGAN00002491029,Normal,Homo sapiens,0,,,PD41305k_142,4396690,,SQSCP,6133STDY8786671,PD41305k_142,,PD41305k_142,9787831e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,14, +27037117,EGAN00002491028,,TGGCGGTC,AGCGTATT,,Standard,TGGCGGTC,AGCGTATT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037117,,9606,S4360,standard,,from:450 to:450,EGAN00002491028,Normal,Homo sapiens,0,,,PD41305k_143,4396691,,SQSCP,6133STDY8786672,PD41305k_143,,PD41305k_143,9791b1a4-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,15, +27037058,EGAN00002491033,,TGATTTCC,ACTTCCGA,,Standard,TGATTTCC,ACTTCCGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037058,,9606,S4360,standard,,from:450 to:450,EGAN00002491033,Normal,Homo sapiens,0,,,PD41305k_146,4396694,,SQSCP,6133STDY8786675,PD41305k_146,,PD41305k_146,97acd61e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,16, +27037094,EGAN00002491035,,TTTAAATG,ACGTTTAA,,Standard,TTTAAATG,ACGTTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037094,,9606,S4360,standard,,from:450 to:450,EGAN00002491035,Normal,Homo sapiens,0,,,PD41305k_149,4396697,,SQSCP,6133STDY8786678,PD41305k_149,,PD41305k_149,97c51120-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,17, +27037106,EGAN00002491037,,ACCTGCGG,ACGCCGCG,,Standard,ACCTGCGG,ACGCCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037106,,9606,S4360,standard,,from:450 to:450,EGAN00002491037,Normal,Homo sapiens,0,,,PD41305k_150,4396698,,SQSCP,6133STDY8786679,PD41305k_150,,PD41305k_150,97cc7bea-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,18, +27037047,EGAN00002491039,,GACCGCAG,GGTCCCTC,,Standard,GACCGCAG,GGTCCCTC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037047,,9606,S4360,standard,,from:450 to:450,EGAN00002491039,Normal,Homo sapiens,0,,,PD41305k_153,4396701,,SQSCP,6133STDY8786682,PD41305k_153,,PD41305k_153,97e24f9c-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,19, +27037071,EGAN00002491041,,GTTTCATG,CAAACAAA,,Standard,GTTTCATG,CAAACAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037071,,9606,S4360,standard,,from:450 to:450,EGAN00002491041,Normal,Homo sapiens,0,,,PD41305k_155,4396703,,SQSCP,6133STDY8786684,PD41305k_155,,PD41305k_155,97f36a66-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,20, +27037083,EGAN00002491042,,AAACATCG,ACCAAAGC,,Standard,AAACATCG,ACCAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037083,,9606,S4360,standard,,from:450 to:450,EGAN00002491042,Normal,Homo sapiens,0,,,PD41305k_156,4396704,,SQSCP,6133STDY8786685,PD41305k_156,,PD41305k_156,97fbbd6a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,21, +27037048,EGAN00002491047,,GCTGCGCT,CCGATAAA,,Standard,GCTGCGCT,CCGATAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037048,,9606,S4360,standard,,from:450 to:450,EGAN00002491047,Normal,Homo sapiens,0,,,PD41305k_161,4396709,,SQSCP,6133STDY8786690,PD41305k_161,,PD41305k_161,98312694-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,22, +27037072,EGAN00002491048,,TGTCAGCT,CGCCGCCC,,Standard,TGTCAGCT,CGCCGCCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037072,,9606,S4360,standard,,from:450 to:450,EGAN00002491048,Normal,Homo sapiens,0,,,PD41305k_163,4396711,,SQSCP,6133STDY8786692,PD41305k_163,,PD41305k_163,98499a8a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,23, +27037084,EGAN00002490985,,CTCTCCGG,TGCCGGCA,,Standard,CTCTCCGG,TGCCGGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037084,,9606,S4360,standard,,from:450 to:450,EGAN00002490985,Normal,Homo sapiens,0,,,PD41305k_164,4396712,,SQSCP,6133STDY8786693,PD41305k_164,,PD41305k_164,985b9848-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,24, +27037134,EGAN00002490989,,AGAGTTAC,GATGGCTA,,Standard,AGAGTTAC,GATGGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037134,,9606,S4360,standard,,from:450 to:450,EGAN00002490989,Normal,Homo sapiens,0,,,PD41305k_168,4396716,,SQSCP,6133STDY8786697,PD41305k_168,,PD41305k_168,988e0b20-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,25, +27037061,EGAN00002490991,,CTCTTTAT,AAGCTCCG,,Standard,CTCTTTAT,AAGCTCCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037061,,9606,S4360,standard,,from:450 to:450,EGAN00002490991,Normal,Homo sapiens,0,,,PD41305k_170,4396718,,SQSCP,6133STDY8786699,PD41305k_170,,PD41305k_170,98a6a338-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,26, +27037073,EGAN00002490992,,AGAGAGCC,ATAGGCAA,,Standard,AGAGAGCC,ATAGGCAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037073,,9606,S4360,standard,,from:450 to:450,EGAN00002490992,Normal,Homo sapiens,0,,,PD41305k_171,4396719,,SQSCP,6133STDY8786700,PD41305k_171,,PD41305k_171,98b1c754-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,27, +27037085,EGAN00002490993,,CATCCACT,CCGGTGCC,,Standard,CATCCACT,CCGGTGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037085,,9606,S4360,standard,,from:450 to:450,EGAN00002490993,Normal,Homo sapiens,0,,,PD41305k_172,4396720,,SQSCP,6133STDY8786701,PD41305k_172,,PD41305k_172,98bc1fd8-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,28, +27037086,EGAN00002491001,,CATTCTTC,TAACCGCG,,Standard,CATTCTTC,TAACCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037086,,9606,S4360,standard,,from:450 to:450,EGAN00002491001,Normal,Homo sapiens,0,,,PD41305k_180,4396728,,SQSCP,6133STDY8786709,PD41305k_180,,PD41305k_180,98fa9880-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,29, +27037098,EGAN00002491002,,CTCGACGT,GAAGAGCC,,Standard,CTCGACGT,GAAGAGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037098,,9606,S4360,standard,,from:450 to:450,EGAN00002491002,Normal,Homo sapiens,0,,,PD41305k_181,4396729,,SQSCP,6133STDY8786710,PD41305k_181,,PD41305k_181,9901eebe-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,30, +27037110,EGAN00002491003,,AGTTGCAA,ATCCTGAG,,Standard,AGTTGCAA,ATCCTGAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037110,,9606,S4360,standard,,from:450 to:450,EGAN00002491003,Normal,Homo sapiens,0,,,PD41305k_182,4396730,,SQSCP,6133STDY8786711,PD41305k_182,,PD41305k_182,990a226e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,31, +27037051,EGAN00002491009,,GTAAGATG,AAAGGCTG,,Standard,GTAAGATG,AAAGGCTG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037051,,9606,S4360,standard,,from:450 to:450,EGAN00002491009,Normal,Homo sapiens,0,,,PD41305k_185,4396733,,SQSCP,6133STDY8786714,PD41305k_185,,PD41305k_185,99276e32-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,32, diff --git a/t/data/samplesheet/novaseq_multirun.csv b/t/data/samplesheet/novaseq_multirun.csv index e4dcfb64..74ac034f 100644 --- a/t/data/samplesheet/novaseq_multirun.csv +++ b/t/data/samplesheet/novaseq_multirun.csv @@ -1,10 +1,10 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Lane,Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,id_run,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -1,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863688,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863689,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -3,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863690,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -4,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863691,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -1,23356155,7617423,,,HiSeqX PCR free,GGCTTAAG,TCGTGACC,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222813,0,23356155,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7617423,3836420,,7617423,,,3426258,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, -2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222814,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, -3,23455444,7616265,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222815,0,23455444,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7616265,3835262,,7616265,,,2612688,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, -4,23454971,7615018,,,HiSeqX PCR free,GACCTGAA,TTGGTGAG,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222816,0,23454971,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7615018,3834015,,7615018,,,2361066,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,id_run,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863688,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863689,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +3,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863690,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +4,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863691,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +1,23356155,7617423,,,HiSeqX PCR free,GGCTTAAG,TCGTGACC,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222813,0,23356155,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7617423,3836420,,,7617423,,,3426258,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222814,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +3,23455444,7616265,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222815,0,23455444,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7616265,3835262,,,7616265,,,2612688,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +4,23454971,7615018,,,HiSeqX PCR free,GACCTGAA,TTGGTGAG,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222816,0,23454971,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7615018,3834015,,,7615018,,,2361066,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4,