From 6c5fc0423fd55fffdc6950f85879c35fd0e73bd6 Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Thu, 10 Oct 2024 13:53:21 +0100 Subject: [PATCH 1/6] Added sample_uuid, sample_lims methods to st::api::lims Patched st::api::lims::samplesheet to allow for scalar attributes ending with 's'. Previously the values of attributes with names ending with 's' were automatically converted to lists. In fact, this was necessary only for comma-separated strings of email addresses. The part of code that deals with email addresses was changed to work on attributes with names starting with 'email' rather than ending with 's'. Prior to applying this patch the value of the new sample_lims attribute was returned as a list when a samplesheet was used as a source of LIMS data. Updated tests and test data. --- MANIFEST | 1 + lib/st/api/lims.pm | 2 + lib/st/api/lims/samplesheet.pm | 2 +- t/40-st-lims-ml_warehouse-drivers.t | 12 +- t/40-st-lims-samplesheet.t | 24 +- t/40-st-lims.t | 42 +++- t/data/fixtures_stlims_wh/000-Sample.yml | 2 +- t/data/samplesheet/4pool4libs_extended.csv | 224 +++++++++--------- t/data/samplesheet/6946_extended.csv | 28 +-- t/data/samplesheet/7007_extended.csv | 6 +- t/data/samplesheet/data4merge.csv | 6 + .../samplesheet/dual_index_extended_new.csv | 68 +++--- t/data/samplesheet/novaseq_multirun.csv | 20 +- 13 files changed, 254 insertions(+), 183 deletions(-) create mode 100644 t/data/samplesheet/data4merge.csv diff --git a/MANIFEST b/MANIFEST index 9ad25f296..8cfd05e1e 100644 --- a/MANIFEST +++ b/MANIFEST @@ -661,6 +661,7 @@ t/data/run_params/runParameters.hiseqx.xml t/data/run_params/runParameters.miseq.xml t/data/run_params/RunParameters.novaseq.xp.lite.xml t/data/run_params/RunParameters.novaseqx.prod.xml +t/data/samplesheet/data4merge.csv t/data/samplesheet/samplesheet_7753.csv t/data/samplesheet/samplesheet_27483.csv t/data/samplesheet/samplesheet_33990.csv diff --git a/lib/st/api/lims.pm b/lib/st/api/lims.pm index bfadd4c6a..34b260ec1 100644 --- a/lib/st/api/lims.pm +++ b/lib/st/api/lims.pm @@ -118,6 +118,8 @@ Readonly::Hash my %METHODS_PER_CATEGORY => { /], 'sample' => [qw/ sample_id + sample_uuid + sample_lims sample_name organism_taxon_id organism diff --git a/lib/st/api/lims/samplesheet.pm b/lib/st/api/lims/samplesheet.pm index 69fe858b2..f133ded21 100644 --- a/lib/st/api/lims/samplesheet.pm +++ b/lib/st/api/lims/samplesheet.pm @@ -315,7 +315,7 @@ for my $m ( st::api::lims->driver_method_list_short(__PACKAGE__->meta->get_attri if (defined $value && $value eq q[]) { $value = undef; } - if ($m =~ /s$/smx) { + if ($m =~ /^email_addresses/smx) { my @temp = $value ? split $SAMPLESHEET_ARRAY_SEPARATOR, $value : (); $value = \@temp; } elsif ($m eq 'required_insert_size_range') { diff --git a/t/40-st-lims-ml_warehouse-drivers.t b/t/40-st-lims-ml_warehouse-drivers.t index fc1556427..b865fd77c 100644 --- a/t/40-st-lims-ml_warehouse-drivers.t +++ b/t/40-st-lims-ml_warehouse-drivers.t @@ -140,7 +140,7 @@ qr/No record retrieved for st::api::lims::ml_warehouse\w* id_flowcell_lims 22043 }; subtest 'lane-level driver from run-level driver' => sub { - plan tests => 108; + plan tests => 124; my $count = 0; for my $p ($mlwh_d, $mlwh_auto_d, $mlwh_auto_d, $mlwh_alt_d) { @@ -169,6 +169,8 @@ subtest 'lane-level driver from run-level driver' => sub { ok (!$d->study_name, 'no study name'); ok (!$d->sample_id, 'no sample_id'); ok (!$d->sample_supplier_name, 'no supplier name'); + ok (!$d->sample_uuid, 'no sample uuid'); + ok (!$d->sample_lims, 'no sample lims'); ok (!$d->sample_cohort, 'no cohort'); ok (!$d->sample_donor_id, 'no donor id'); is ($d->default_tag_sequence, undef, 'first index sequence undefined'); @@ -184,6 +186,8 @@ subtest 'lane-level driver from run-level driver' => sub { ok(!$lims1->sample_consent_withdrawn(), 'sample consent not withdrawn'); is ($lims1->sample_id, 7283, 'sample id'); is ($lims1->sample_supplier_name, 'sample_33', 'supplier name'); + is ($lims1->sample_uuid, 'fdb13110-6a55-11e4-8e19-68b59977951c', 'sample uuid'); + is ($lims1->sample_lims, 'CLARITY', 'sample lims'); is ($lims1->sample_cohort, 'plan2', 'cohort'); is ($lims1->sample_donor_id, 'd5678', 'donor id'); is ($lims1->purpose, 'qc', 'purpose'); @@ -276,7 +280,7 @@ sub _add2query { } subtest 'lane and tag level drivers' => sub { - plan tests => 136; + plan tests => 152; my $lims_id = 16249; my $id_run = 45678; @@ -323,6 +327,8 @@ subtest 'lane and tag level drivers' => sub { is (scalar $lims->children, 9, 'tag zero - nine-long children list'); is ($lims->spiked_phix_tag_index, 168, 'spike index'); ok (!$lims->sample_supplier_name, 'no supplier name'); + ok (!$lims->sample_uuid, 'no sample uuid'); + ok (!$lims->sample_lims, 'no sample lims'); ok (!$lims->sample_cohort, 'no cohort'); ok (!$lims->sample_donor_id, 'no donor id'); is ($lims->default_tag_sequence, undef, 'first index sequence undefined'); @@ -340,6 +346,8 @@ subtest 'lane and tag level drivers' => sub { ok (!$lims->is_control, 'tag 2 is not control'); is ($lims->sample_id, 1092803, 'sample id'); is ($lims->sample_supplier_name, 'sample_33', 'supplier name'); + is ($lims->sample_uuid, 'f44b2ec0-6f67-11e4-a268-68b59977951c', 'sample uuid'); + is ($lims->sample_lims, 'SQSCP', 'sample lims'); is ($lims->sample_cohort, 'plan1', 'cohort'); is ($lims->sample_donor_id, '5678', 'donor id'); is ($lims->default_tag_sequence, 'CGATGT', 'first index sequence'); diff --git a/t/40-st-lims-samplesheet.t b/t/40-st-lims-samplesheet.t index 78c785ed0..92cc25b08 100644 --- a/t/40-st-lims-samplesheet.t +++ b/t/40-st-lims-samplesheet.t @@ -1,6 +1,6 @@ use strict; use warnings; -use Test::More tests => 11; +use Test::More tests => 12; use Test::Exception; use Test::Warn; use File::Slurp; @@ -397,4 +397,26 @@ subtest 'dual index default' => sub { is($p->default_tagtwo_sequence, undef, 'no second index'); }; +subtest 'sample uuid and LIMS id' => sub { + plan tests => 10; + + my $path = 't/data/samplesheet/4pool4libs_extended.csv'; + my $ss = st::api::lims::samplesheet->new(id_run => 6946, position => 1, path => $path); + ok (!$ss->is_pool, 'lane 1 is not a pool'); + is ($ss->sample_uuid, 'c46e1810-e8aa-11e2-aafd-68b59976a382', 'sample uuid'); + is ($ss->sample_lims, 'SQSCP', 'sample lims'); + $ss = st::api::lims::samplesheet->new(id_run => 6946, position => 6, path => $path); + ok ($ss->is_pool, 'lane 6 is a pool'); + is ($ss->sample_uuid, undef, 'sample uuid is not defined'); + is ($ss->sample_lims, undef, 'sample lims is not defined'); + my @plexes = $ss->children(); + is ($plexes[0]->sample_uuid, '62a06c60-2139-11e3-b2c2-68b59976a382', + 'sample uuid for a plex'); + is ($plexes[0]->sample_lims, 'SQSCP', 'sample lims for a plex'); + $ss = st::api::lims::samplesheet->new( + id_run => 6946, position => 6, tag_index => 0, path => $path); + is ($ss->sample_uuid, undef, 'sample uuid is not defined'); + is ($ss->sample_lims, undef, 'sample lims is not defined'); +}; + 1; diff --git a/t/40-st-lims.t b/t/40-st-lims.t index 02ec3ac5b..d02d8eb57 100644 --- a/t/40-st-lims.t +++ b/t/40-st-lims.t @@ -5,7 +5,7 @@ use Test::Exception; use Test::Warn; use Moose::Meta::Class; -my $num_delegated_methods = 45; +my $num_delegated_methods = 47; use_ok('st::api::lims'); @@ -133,7 +133,7 @@ subtest 'Setting return value for primary attributes' => sub { }; subtest 'Run-level object via samplesheet driver' => sub { - plan tests => 36; + plan tests => 40; my $path = 't/data/samplesheet/miseq_default.csv'; @@ -176,6 +176,8 @@ subtest 'Run-level object via samplesheet driver' => sub { is ($plexes[0]->id_run, 10262, 'id_run of the first plexe set correctly from Experiment Name'); is ($plexes[0]->library_id, 7583411, 'library_id of the first plex'); is ($plexes[0]->sample_name, 'LIA_1', 'sample_name of the first plex'); + is ($plexes[0]->sample_uuid, undef, 'sample_uuid of the first plex'); + is ($plexes[0]->sample_lims, undef, 'sample_lims of the first plex'); is ($plexes[0]->sample_id, undef, 'sample_id of the first plex in undefined'); is ($plexes[0]->is_pool, 0, 'is_pool false on plex level'); is ($plexes[0]->is_control, undef, 'is_control false on for a plex'); @@ -187,10 +189,12 @@ subtest 'Run-level object via samplesheet driver' => sub { is ($plexes[95]->tag_sequence, 'GTCTTGGC', 'tag sequence of the last plex'); is ($plexes[95]->library_id, 7583506, 'library_id of the last plex'); is ($plexes[95]->sample_name, 'LIA_96', 'sample_name of the last plex'); + is ($plexes[95]->sample_uuid, undef, 'sample_uuid of the last plex'); + is ($plexes[95]->sample_lims, undef, 'sample_lims of the last plex'); }; subtest 'Lane-level and tag zero objects via samplesheet driver' => sub { - plan tests => 20; + plan tests => 24; my $path = 't/data/samplesheet/miseq_default.csv'; @@ -217,13 +221,15 @@ subtest 'Lane-level and tag zero objects via samplesheet driver' => sub { is (scalar $ss->children, 96, '96 plexes returned'); is ($ss->library_id, undef, 'library_id undefined'); is ($ss->sample_name, undef, 'sample name is undefined'); + is ($ss->sample_uuid, undef, 'sample uuid is undefined'); + is ($ss->sample_lims, undef, 'sample lims is undefined'); is ($ss->default_tag_sequence, undef, 'default tag sequence undefined'); is ($ss->tag_sequence, undef, 'tag sequence undefined'); } }; subtest 'Plex-level objects via samplesheet driver' => sub { - plan tests => 10; + plan tests => 12; my $path = 't/data/samplesheet/miseq_default.csv'; my $l; @@ -244,6 +250,8 @@ subtest 'Plex-level objects via samplesheet driver' => sub { 'tag sequence is the same as default tag sequence'); is ($l->library_id, 7583413, 'library id is correct'); is ($l->sample_name, 'LIA_3', 'sample name is correct'); + is ($l->sample_uuid, undef, 'sample uuid is undefined'); + is ($l->sample_lims, undef, 'sample lims is undefined'); is (scalar $l->children, 0, 'zero children returned'); }; @@ -284,7 +292,7 @@ subtest 'Samplesheet driver for a one-component composition' => sub { }; subtest 'Samplesheet driver for arbitrary compositions' => sub { - plan tests => 75; + plan tests => 93; my $path = 't/data/samplesheet/novaseq_multirun.csv'; local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = $path; @@ -305,6 +313,8 @@ subtest 'Samplesheet driver for arbitrary compositions' => sub { is($o->default_tagtwo_sequence, 'CCAACAGA', 'tag2 sequence'); is($o->default_library_type, 'HiSeqX PCR free', 'library type'); is($o->sample_name, '7592352', 'sample name'); + is($o->sample_uuid, undef, 'sample uuid'); + is($o->sample_lims, undef, 'sample lims'); is($o->study_name, 'UK Study', 'study name'); is($o->library_name, '22802061', 'library name'); is($o->reference_genome, 'Homo_sapiens (GRCh38_15_plus_hs38d1) [minimap2]', @@ -342,6 +352,28 @@ subtest 'Samplesheet driver for arbitrary compositions' => sub { is ($ss->id_run, 28780, 'correct run id'); is ($ss->position, 2, 'correct position'); is ($ss->tag_index, 4, 'correct tag_index'); + + $path = 't/data/samplesheet/data4merge.csv'; + local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = $path; + + $rpt_list = '26480:1:9;26480:2:9'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->sample_uuid, '673165ec-f8c6-11e0-8838-68b59976a382', + 'sample uuid for a composition'); + is ($ss->sample_lims, 'CLARITY', 'sample lims for a composition'); + + $rpt_list = '26480:3:9;26480:4:9'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->sample_uuid, 'b6ea25f0-f8cc-11e0-8838-68b59976a382', + 'sample uuid for a composition'); + is ($ss->sample_lims, 'Traction', 'sample lims for a composition'); + + $rpt_list = '26480:1:9;26480:2:9;26480:3:9;26480:4:9'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->sample_uuid, undef, 'sample uuid for a composition is undefined ' . + 'since the values for individual components differ'); + is ($ss->sample_lims, undef, 'sample lims for a composition is undefined ' . + 'since the values for individual components differ'); }; subtest 'Dual index' => sub { diff --git a/t/data/fixtures_stlims_wh/000-Sample.yml b/t/data/fixtures_stlims_wh/000-Sample.yml index 97d431fd7..d20de9259 100644 --- a/t/data/fixtures_stlims_wh/000-Sample.yml +++ b/t/data/fixtures_stlims_wh/000-Sample.yml @@ -5,7 +5,7 @@ created: 2009-07-01 16:23:00 deleted_at: ~ description: ~ - id_lims: SQSCP + id_lims: CLARITY id_sample_lims: 7283 cohort: plan2 donor_id: d5678 diff --git a/t/data/samplesheet/4pool4libs_extended.csv b/t/data/samplesheet/4pool4libs_extended.csv index 87a7ad1b3..7a5f8dbc6 100644 --- a/t/data/samplesheet/4pool4libs_extended.csv +++ b/t/data/samplesheet/4pool4libs_extended.csv @@ -1,112 +1,112 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -1,7809257,ERS323818,,,,,No PCR,,,,,,,,0,0,8381746,0,7809257,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323818,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660679,,Hc_4_BC4_P2_5046_340285,Haemonchus contortus MHco3%2F4.BC4(P2)-5046,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, -2,7809258,ERS323819,,,,Fox bait,No PCR,,,,,,,,0,0,8381744,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, -3,7809258,ERS323819,,,,,No PCR,,,,,,,,0,0,8381745,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, -4,8215019,ERS351213,,TAAGGCGA,TAGATCGC,,qPCR only,TAAGGCGATAGATCGC,,,,,,,0,0,8381739,0,8215019,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351213,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706390,,mES_ai2_s2_cell1,mES_ai2_s2_cell1,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,1, -4,8215020,ERS351214,,CGTACTAG,TAGATCGC,,qPCR only,CGTACTAGTAGATCGC,,,,,,,0,0,8381739,0,8215020,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351214,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706391,,mES_ai2_s2_cell2,mES_ai2_s2_cell2,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,2, -4,8215021,ERS351221,,AGGCAGAA,TAGATCGC,,qPCR only,AGGCAGAATAGATCGC,,,,,,,0,0,8381739,0,8215021,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351221,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706392,,mES_ai2_s2_cell3,mES_ai2_s2_cell3,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,3, -4,8215022,ERS351222,,TCCTGAGC,TAGATCGC,,qPCR only,TCCTGAGCTAGATCGC,,,,,,,0,0,8381739,0,8215022,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351222,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706393,,mES_ai2_s2_cell4,mES_ai2_s2_cell4,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,4, -4,8215023,ERS351223,,GGACTCCT,TAGATCGC,,qPCR only,GGACTCCTTAGATCGC,,,,,,,0,0,8381739,0,8215023,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351223,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706394,,mES_ai2_s2_cell5,mES_ai2_s2_cell5,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,5, -4,8215024,ERS351224,,TAGGCATG,TAGATCGC,,qPCR only,TAGGCATGTAGATCGC,,,,,,,0,0,8381739,0,8215024,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351224,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706395,,mES_ai2_s2_cell6,mES_ai2_s2_cell6,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,6, -4,8215025,ERS351225,,CTCTCTAC,TAGATCGC,,qPCR only,CTCTCTACTAGATCGC,,,,,,,0,0,8381739,0,8215025,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351225,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706396,,mES_ai2_s2_cell7,mES_ai2_s2_cell7,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,7, -4,8215026,ERS351218,,CAGAGAGG,TAGATCGC,,qPCR only,CAGAGAGGTAGATCGC,,,,,,,0,0,8381739,0,8215026,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351218,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706397,,mES_ai2_s2_cell8,mES_ai2_s2_cell8,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,8, -4,8215027,ERS351219,,GCTACGCT,TAGATCGC,,qPCR only,GCTACGCTTAGATCGC,,,,,,,0,0,8381739,0,8215027,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351219,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706398,,mES_ai2_s2_cell9,mES_ai2_s2_cell9,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,9, -4,8215028,ERS351220,,CGAGGCTG,TAGATCGC,,qPCR only,CGAGGCTGTAGATCGC,,,,,,,0,0,8381739,0,8215028,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351220,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706399,,mES_ai2_s2_cell10,mES_ai2_s2_cell10,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,10, -4,8215029,ERS351235,,AAGAGGCA,TAGATCGC,,qPCR only,AAGAGGCATAGATCGC,,,,,,,0,0,8381739,0,8215029,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351235,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706400,,mES_ai2_s2_cell11,mES_ai2_s2_cell11,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,11, -4,8215030,ERS351237,,GTAGAGGA,TAGATCGC,,qPCR only,GTAGAGGATAGATCGC,,,,,,,0,0,8381739,0,8215030,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351237,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706401,,mES_ai2_s2_cell12,mES_ai2_s2_cell12,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,12, -4,8215031,ERS351238,,TAAGGCGA,CTCTCTAT,,qPCR only,TAAGGCGACTCTCTAT,,,,,,,0,0,8381739,0,8215031,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351238,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706402,,mES_ai2_s2_cell13,mES_ai2_s2_cell13,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,13, -4,8215032,ERS351239,,CGTACTAG,CTCTCTAT,,qPCR only,CGTACTAGCTCTCTAT,,,,,,,0,0,8381739,0,8215032,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351239,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706403,,mES_ai2_s2_cell14,mES_ai2_s2_cell14,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,14, -4,8215033,ERS351241,,AGGCAGAA,CTCTCTAT,,qPCR only,AGGCAGAACTCTCTAT,,,,,,,0,0,8381739,0,8215033,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351241,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706404,,mES_ai2_s2_cell15,mES_ai2_s2_cell15,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,15, -4,8215034,ERS351226,,TCCTGAGC,CTCTCTAT,,qPCR only,TCCTGAGCCTCTCTAT,,,,,,,0,0,8381739,0,8215034,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351226,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706405,,mES_ai2_s2_cell16,mES_ai2_s2_cell16,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,16, -4,8215035,ERS351227,,GGACTCCT,CTCTCTAT,,qPCR only,GGACTCCTCTCTCTAT,,,,,,,0,0,8381739,0,8215035,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351227,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706406,,mES_ai2_s2_cell17,mES_ai2_s2_cell17,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,17, -4,8215036,ERS351234,,TAGGCATG,CTCTCTAT,,qPCR only,TAGGCATGCTCTCTAT,,,,,,,0,0,8381739,0,8215036,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351234,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706407,,mES_ai2_s2_cell18,mES_ai2_s2_cell18,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,18, -4,8215037,ERS351236,,CTCTCTAC,CTCTCTAT,,qPCR only,CTCTCTACCTCTCTAT,,,,,,,0,0,8381739,0,8215037,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351236,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706408,,mES_ai2_s2_cell19,mES_ai2_s2_cell19,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,19, -4,8215038,ERS351247,,CAGAGAGG,CTCTCTAT,,qPCR only,CAGAGAGGCTCTCTAT,,,,,,,0,0,8381739,0,8215038,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351247,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706409,,mES_ai2_s2_cell20,mES_ai2_s2_cell20,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,20, -4,8215039,ERS351249,,GCTACGCT,CTCTCTAT,,qPCR only,GCTACGCTCTCTCTAT,,,,,,,0,0,8381739,0,8215039,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351249,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706410,,mES_ai2_s2_cell21,mES_ai2_s2_cell21,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,21, -4,8215040,ERS351251,,CGAGGCTG,CTCTCTAT,,qPCR only,CGAGGCTGCTCTCTAT,,,,,,,0,0,8381739,0,8215040,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351251,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706411,,mES_ai2_s2_cell22,mES_ai2_s2_cell22,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,22, -4,8215041,ERS351252,,AAGAGGCA,CTCTCTAT,,qPCR only,AAGAGGCACTCTCTAT,,,,,,,0,0,8381739,0,8215041,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351252,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706412,,mES_ai2_s2_cell23,mES_ai2_s2_cell23,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,23, -4,8215042,ERS351242,,GTAGAGGA,CTCTCTAT,,qPCR only,GTAGAGGACTCTCTAT,,,,,,,0,0,8381739,0,8215042,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351242,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706413,,mES_ai2_s2_cell24,mES_ai2_s2_cell24,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,24, -4,8215043,ERS351243,,TAAGGCGA,TATCCTCT,,qPCR only,TAAGGCGATATCCTCT,,,,,,,0,0,8381739,0,8215043,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351243,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706414,,mES_ai2_s2_cell25,mES_ai2_s2_cell25,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,25, -4,8215044,ERS351244,,CGTACTAG,TATCCTCT,,qPCR only,CGTACTAGTATCCTCT,,,,,,,0,0,8381739,0,8215044,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351244,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706415,,mES_ai2_s2_cell26,mES_ai2_s2_cell26,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,26, -4,8215045,ERS351245,,AGGCAGAA,TATCCTCT,,qPCR only,AGGCAGAATATCCTCT,,,,,,,0,0,8381739,0,8215045,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351245,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706416,,mES_ai2_s2_cell27,mES_ai2_s2_cell27,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,27, -4,8215046,ERS351248,,TCCTGAGC,TATCCTCT,,qPCR only,TCCTGAGCTATCCTCT,,,,,,,0,0,8381739,0,8215046,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351248,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706417,,mES_ai2_s2_cell28,mES_ai2_s2_cell28,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,28, -4,8215047,ERS351250,,GGACTCCT,TATCCTCT,,qPCR only,GGACTCCTTATCCTCT,,,,,,,0,0,8381739,0,8215047,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351250,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706418,,mES_ai2_s2_cell29,mES_ai2_s2_cell29,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,29, -4,8215048,ERS351260,,TAGGCATG,TATCCTCT,,qPCR only,TAGGCATGTATCCTCT,,,,,,,0,0,8381739,0,8215048,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351260,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706419,,mES_ai2_s2_cell30,mES_ai2_s2_cell30,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,30, -4,8215049,ERS351261,,CTCTCTAC,TATCCTCT,,qPCR only,CTCTCTACTATCCTCT,,,,,,,0,0,8381739,0,8215049,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351261,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706420,,mES_ai2_s2_cell31,mES_ai2_s2_cell31,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,31, -4,8215050,ERS351254,,CAGAGAGG,TATCCTCT,,qPCR only,CAGAGAGGTATCCTCT,,,,,,,0,0,8381739,0,8215050,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351254,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706421,,mES_ai2_s2_cell32,mES_ai2_s2_cell32,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,32, -4,8215051,ERS351255,,GCTACGCT,TATCCTCT,,qPCR only,GCTACGCTTATCCTCT,,,,,,,0,0,8381739,0,8215051,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351255,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706422,,mES_ai2_s2_cell33,mES_ai2_s2_cell33,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,33, -4,8215052,ERS351256,,CGAGGCTG,TATCCTCT,,qPCR only,CGAGGCTGTATCCTCT,,,,,,,0,0,8381739,0,8215052,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351256,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706423,,mES_ai2_s2_cell34,mES_ai2_s2_cell34,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,34, -4,8215053,ERS351257,,AAGAGGCA,TATCCTCT,,qPCR only,AAGAGGCATATCCTCT,,,,,,,0,0,8381739,0,8215053,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351257,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706424,,mES_ai2_s2_cell35,mES_ai2_s2_cell35,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,35, -4,8215054,ERS351258,,GTAGAGGA,TATCCTCT,,qPCR only,GTAGAGGATATCCTCT,,,,,,,0,0,8381739,0,8215054,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351258,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706425,,mES_ai2_s2_cell36,mES_ai2_s2_cell36,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,36, -4,8215055,ERS351259,,TAAGGCGA,AGAGTAGA,,qPCR only,TAAGGCGAAGAGTAGA,,,,,,,0,0,8381739,0,8215055,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351259,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706426,,mES_ai2_s2_cell37,mES_ai2_s2_cell37,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,37, -4,8215056,ERS351269,,CGTACTAG,AGAGTAGA,,qPCR only,CGTACTAGAGAGTAGA,,,,,,,0,0,8381739,0,8215056,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351269,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706427,,mES_ai2_s2_cell38,mES_ai2_s2_cell38,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,38, -4,8215057,ERS351271,,AGGCAGAA,AGAGTAGA,,qPCR only,AGGCAGAAAGAGTAGA,,,,,,,0,0,8381739,0,8215057,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351271,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706428,,mES_ai2_s2_cell39,mES_ai2_s2_cell39,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,39, -4,8215058,ERS351262,,TCCTGAGC,AGAGTAGA,,qPCR only,TCCTGAGCAGAGTAGA,,,,,,,0,0,8381739,0,8215058,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351262,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706429,,mES_ai2_s2_cell40,mES_ai2_s2_cell40,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,40, -4,8215059,ERS351263,,GGACTCCT,AGAGTAGA,,qPCR only,GGACTCCTAGAGTAGA,,,,,,,0,0,8381739,0,8215059,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351263,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706430,,mES_ai2_s2_cell41,mES_ai2_s2_cell41,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,41, -4,8215060,ERS351264,,TAGGCATG,AGAGTAGA,,qPCR only,TAGGCATGAGAGTAGA,,,,,,,0,0,8381739,0,8215060,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351264,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706431,,mES_ai2_s2_cell42,mES_ai2_s2_cell42,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,42, -4,8215061,ERS351266,,CTCTCTAC,AGAGTAGA,,qPCR only,CTCTCTACAGAGTAGA,,,,,,,0,0,8381739,0,8215061,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351266,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706432,,mES_ai2_s2_cell43,mES_ai2_s2_cell43,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,43, -4,8215062,ERS351267,,CAGAGAGG,AGAGTAGA,,qPCR only,CAGAGAGGAGAGTAGA,,,,,,,0,0,8381739,0,8215062,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351267,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706433,,mES_ai2_s2_cell44,mES_ai2_s2_cell44,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,44, -4,8215063,ERS351268,,GCTACGCT,AGAGTAGA,,qPCR only,GCTACGCTAGAGTAGA,,,,,,,0,0,8381739,0,8215063,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351268,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706434,,mES_ai2_s2_cell45,mES_ai2_s2_cell45,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,45, -4,8215064,ERS351270,,CGAGGCTG,AGAGTAGA,,qPCR only,CGAGGCTGAGAGTAGA,,,,,,,0,0,8381739,0,8215064,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351270,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706435,,mES_ai2_s2_cell46,mES_ai2_s2_cell46,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,46, -4,8215065,ERS351272,,AAGAGGCA,AGAGTAGA,,qPCR only,AAGAGGCAAGAGTAGA,,,,,,,0,0,8381739,0,8215065,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351272,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706436,,mES_ai2_s2_cell47,mES_ai2_s2_cell47,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,47, -4,8215066,ERS351273,,GTAGAGGA,AGAGTAGA,,qPCR only,GTAGAGGAAGAGTAGA,,,,,,,0,0,8381739,0,8215066,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351273,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706437,,mES_ai2_s2_cell48,mES_ai2_s2_cell48,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,48, -4,8215067,ERS351275,,TAAGGCGA,GTAAGGAG,,qPCR only,TAAGGCGAGTAAGGAG,,,,,,,0,0,8381739,0,8215067,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351275,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706438,,mES_ai2_s2_cell49,mES_ai2_s2_cell49,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,49, -4,8215068,ERS351277,,CGTACTAG,GTAAGGAG,,qPCR only,CGTACTAGGTAAGGAG,,,,,,,0,0,8381739,0,8215068,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351277,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706439,,mES_ai2_s2_cell50,mES_ai2_s2_cell50,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,50, -4,8215069,ERS351278,,AGGCAGAA,GTAAGGAG,,qPCR only,AGGCAGAAGTAAGGAG,,,,,,,0,0,8381739,0,8215069,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351278,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706440,,mES_ai2_s2_cell51,mES_ai2_s2_cell51,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,51, -4,8215070,ERS351279,,TCCTGAGC,GTAAGGAG,,qPCR only,TCCTGAGCGTAAGGAG,,,,,,,0,0,8381739,0,8215070,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351279,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706441,,mES_ai2_s2_cell52,mES_ai2_s2_cell52,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,52, -4,8215071,ERS351280,,GGACTCCT,GTAAGGAG,,qPCR only,GGACTCCTGTAAGGAG,,,,,,,0,0,8381739,0,8215071,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351280,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706442,,mES_ai2_s2_cell53,mES_ai2_s2_cell53,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,53, -4,8215072,ERS351281,,TAGGCATG,GTAAGGAG,,qPCR only,TAGGCATGGTAAGGAG,,,,,,,0,0,8381739,0,8215072,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351281,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706443,,mES_ai2_s2_cell54,mES_ai2_s2_cell54,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,54, -4,8215073,ERS351282,,CTCTCTAC,GTAAGGAG,,qPCR only,CTCTCTACGTAAGGAG,,,,,,,0,0,8381739,0,8215073,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351282,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706444,,mES_ai2_s2_cell55,mES_ai2_s2_cell55,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,55, -4,8215074,ERS351274,,CAGAGAGG,GTAAGGAG,,qPCR only,CAGAGAGGGTAAGGAG,,,,,,,0,0,8381739,0,8215074,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351274,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706445,,mES_ai2_s2_cell56,mES_ai2_s2_cell56,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,56, -4,8215075,ERS351276,,GCTACGCT,GTAAGGAG,,qPCR only,GCTACGCTGTAAGGAG,,,,,,,0,0,8381739,0,8215075,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351276,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706446,,mES_ai2_s2_cell57,mES_ai2_s2_cell57,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,57, -4,8215076,ERS351285,,CGAGGCTG,GTAAGGAG,,qPCR only,CGAGGCTGGTAAGGAG,,,,,,,0,0,8381739,0,8215076,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351285,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706447,,mES_ai2_s2_cell58,mES_ai2_s2_cell58,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,58, -4,8215077,ERS351286,,AAGAGGCA,GTAAGGAG,,qPCR only,AAGAGGCAGTAAGGAG,,,,,,,0,0,8381739,0,8215077,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351286,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706448,,mES_ai2_s2_cell59,mES_ai2_s2_cell59,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,59, -4,8215078,ERS351287,,GTAGAGGA,GTAAGGAG,,qPCR only,GTAGAGGAGTAAGGAG,,,,,,,0,0,8381739,0,8215078,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351287,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706449,,mES_ai2_s2_cell60,mES_ai2_s2_cell60,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,60, -4,8215079,ERS351288,,TAAGGCGA,ACTGCATA,,qPCR only,TAAGGCGAACTGCATA,,,,,,,0,0,8381739,0,8215079,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351288,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706450,,mES_ai2_s2_cell61,mES_ai2_s2_cell61,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,61, -4,8215080,ERS351289,,CGTACTAG,ACTGCATA,,qPCR only,CGTACTAGACTGCATA,,,,,,,0,0,8381739,0,8215080,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351289,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706451,,mES_ai2_s2_cell62,mES_ai2_s2_cell62,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,62, -4,8215081,ERS351290,,AGGCAGAA,ACTGCATA,,qPCR only,AGGCAGAAACTGCATA,,,,,,,0,0,8381739,0,8215081,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351290,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706452,,mES_ai2_s2_cell63,mES_ai2_s2_cell63,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,63, -4,8215082,ERS351283,,TCCTGAGC,ACTGCATA,,qPCR only,TCCTGAGCACTGCATA,,,,,,,0,0,8381739,0,8215082,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351283,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706453,,mES_ai2_s2_cell64,mES_ai2_s2_cell64,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,64, -4,8215083,ERS351284,,GGACTCCT,ACTGCATA,,qPCR only,GGACTCCTACTGCATA,,,,,,,0,0,8381739,0,8215083,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351284,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706454,,mES_ai2_s2_cell65,mES_ai2_s2_cell65,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,65, -4,8215084,ERS351292,,TAGGCATG,ACTGCATA,,qPCR only,TAGGCATGACTGCATA,,,,,,,0,0,8381739,0,8215084,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351292,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706455,,mES_ai2_s2_cell66,mES_ai2_s2_cell66,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,66, -4,8215085,ERS351293,,CTCTCTAC,ACTGCATA,,qPCR only,CTCTCTACACTGCATA,,,,,,,0,0,8381739,0,8215085,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351293,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706456,,mES_ai2_s2_cell67,mES_ai2_s2_cell67,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,67, -4,8215086,ERS351294,,CAGAGAGG,ACTGCATA,,qPCR only,CAGAGAGGACTGCATA,,,,,,,0,0,8381739,0,8215086,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351294,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706457,,mES_ai2_s2_cell68,mES_ai2_s2_cell68,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,68, -4,8215087,ERS351295,,GCTACGCT,ACTGCATA,,qPCR only,GCTACGCTACTGCATA,,,,,,,0,0,8381739,0,8215087,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351295,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706458,,mES_ai2_s2_cell69,mES_ai2_s2_cell69,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,69, -4,8215088,ERS351296,,CGAGGCTG,ACTGCATA,,qPCR only,CGAGGCTGACTGCATA,,,,,,,0,0,8381739,0,8215088,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351296,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706459,,mES_ai2_s2_cell70,mES_ai2_s2_cell70,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,70, -4,8215089,ERS351297,,AAGAGGCA,ACTGCATA,,qPCR only,AAGAGGCAACTGCATA,,,,,,,0,0,8381739,0,8215089,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351297,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706460,,mES_ai2_s2_cell71,mES_ai2_s2_cell71,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,71, -4,8215090,ERS351291,,GTAGAGGA,ACTGCATA,,qPCR only,GTAGAGGAACTGCATA,,,,,,,0,0,8381739,0,8215090,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351291,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706461,,mES_ai2_s2_cell72,mES_ai2_s2_cell72,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,72, -4,8215091,ERS351299,,TAAGGCGA,AAGGAGTA,,qPCR only,TAAGGCGAAAGGAGTA,,,,,,,0,0,8381739,0,8215091,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351299,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706462,,mES_ai2_s2_cell73,mES_ai2_s2_cell73,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,73, -4,8215092,ERS351301,,CGTACTAG,AAGGAGTA,,qPCR only,CGTACTAGAAGGAGTA,,,,,,,0,0,8381739,0,8215092,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351301,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706463,,mES_ai2_s2_cell74,mES_ai2_s2_cell74,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,74, -4,8215093,ERS351302,,AGGCAGAA,AAGGAGTA,,qPCR only,AGGCAGAAAAGGAGTA,,,,,,,0,0,8381739,0,8215093,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351302,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706464,,mES_ai2_s2_cell75,mES_ai2_s2_cell75,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,75, -4,8215094,ERS351303,,TCCTGAGC,AAGGAGTA,,qPCR only,TCCTGAGCAAGGAGTA,,,,,,,0,0,8381739,0,8215094,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351303,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706465,,mES_ai2_s2_cell76,mES_ai2_s2_cell76,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,76, -4,8215095,ERS351304,,GGACTCCT,AAGGAGTA,,qPCR only,GGACTCCTAAGGAGTA,,,,,,,0,0,8381739,0,8215095,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351304,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706466,,mES_ai2_s2_cell77,mES_ai2_s2_cell77,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,77, -4,8215096,ERS351305,,TAGGCATG,AAGGAGTA,,qPCR only,TAGGCATGAAGGAGTA,,,,,,,0,0,8381739,0,8215096,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351305,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706467,,mES_ai2_s2_cell78,mES_ai2_s2_cell78,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,78, -4,8215097,ERS351306,,CTCTCTAC,AAGGAGTA,,qPCR only,CTCTCTACAAGGAGTA,,,,,,,0,0,8381739,0,8215097,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351306,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706468,,mES_ai2_s2_cell79,mES_ai2_s2_cell79,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,79, -4,8215098,ERS351298,,CAGAGAGG,AAGGAGTA,,qPCR only,CAGAGAGGAAGGAGTA,,,,,,,0,0,8381739,0,8215098,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351298,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706469,,mES_ai2_s2_cell80,mES_ai2_s2_cell80,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,80, -4,8215099,ERS351300,,GCTACGCT,AAGGAGTA,,qPCR only,GCTACGCTAAGGAGTA,,,,,,,0,0,8381739,0,8215099,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351300,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706470,,mES_ai2_s2_cell81,mES_ai2_s2_cell81,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,81, -4,8215100,ERS351309,,CGAGGCTG,AAGGAGTA,,qPCR only,CGAGGCTGAAGGAGTA,,,,,,,0,0,8381739,0,8215100,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351309,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706471,,mES_ai2_s2_cell82,mES_ai2_s2_cell82,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,82, -4,8215101,ERS351310,,AAGAGGCA,AAGGAGTA,,qPCR only,AAGAGGCAAAGGAGTA,,,,,,,0,0,8381739,0,8215101,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351310,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706472,,mES_ai2_s2_cell83,mES_ai2_s2_cell83,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,83, -4,8215102,ERS351311,,GTAGAGGA,AAGGAGTA,,qPCR only,GTAGAGGAAAGGAGTA,,,,,,,0,0,8381739,0,8215102,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351311,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706473,,mES_ai2_s2_cell84,mES_ai2_s2_cell84,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,84, -4,8215103,ERS351312,,TAAGGCGA,CTAAGCCT,,qPCR only,TAAGGCGACTAAGCCT,,,,,,,0,0,8381739,0,8215103,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351312,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706474,,mES_ai2_s2_cell85,mES_ai2_s2_cell85,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,85, -4,8215104,ERS351313,,CGTACTAG,CTAAGCCT,,qPCR only,CGTACTAGCTAAGCCT,,,,,,,0,0,8381739,0,8215104,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351313,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706475,,mES_ai2_s2_cell86,mES_ai2_s2_cell86,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,86, -4,8215105,ERS351314,,AGGCAGAA,CTAAGCCT,,qPCR only,AGGCAGAACTAAGCCT,,,,,,,0,0,8381739,0,8215105,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351314,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706476,,mES_ai2_s2_cell87,mES_ai2_s2_cell87,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,87, -4,8215106,ERS351307,,TCCTGAGC,CTAAGCCT,,qPCR only,TCCTGAGCCTAAGCCT,,,,,,,0,0,8381739,0,8215106,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351307,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706477,,mES_ai2_s2_cell88,mES_ai2_s2_cell88,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,88, -4,8215107,ERS351308,,GGACTCCT,CTAAGCCT,,qPCR only,GGACTCCTCTAAGCCT,,,,,,,0,0,8381739,0,8215107,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351308,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706478,,mES_ai2_s2_cell89,mES_ai2_s2_cell89,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,89, -4,8215108,ERS351315,,TAGGCATG,CTAAGCCT,,qPCR only,TAGGCATGCTAAGCCT,,,,,,,0,0,8381739,0,8215108,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351315,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706479,,mES_ai2_s2_cell90,mES_ai2_s2_cell90,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,90, -4,8215109,ERS351316,,CTCTCTAC,CTAAGCCT,,qPCR only,CTCTCTACCTAAGCCT,,,,,,,0,0,8381739,0,8215109,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351316,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706480,,mES_ai2_s2_cell91,mES_ai2_s2_cell91,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,91, -4,8215110,ERS351317,,CAGAGAGG,CTAAGCCT,,qPCR only,CAGAGAGGCTAAGCCT,,,,,,,0,0,8381739,0,8215110,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351317,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706481,,mES_ai2_s2_cell92,mES_ai2_s2_cell92,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,92, -4,8215111,ERS351318,,GCTACGCT,CTAAGCCT,,qPCR only,GCTACGCTCTAAGCCT,,,,,,,0,0,8381739,0,8215111,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351318,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706482,,mES_ai2_s2_cell93,mES_ai2_s2_cell93,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,93, -4,8215112,ERS351319,,CGAGGCTG,CTAAGCCT,,qPCR only,CGAGGCTGCTAAGCCT,,,,,,,0,0,8381739,0,8215112,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351319,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706483,,mES_ai2_s2_cell94,mES_ai2_s2_cell94,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,94, -4,8215113,ERS351320,,AAGAGGCA,CTAAGCCT,,qPCR only,AAGAGGCACTAAGCCT,,,,,,,0,0,8381739,0,8215113,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351320,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706484,,mES_ai2_s2_cell95,mES_ai2_s2_cell95,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,95, -4,8215114,ERS351321,,GTAGAGGA,CTAAGCCT,,qPCR only,GTAGAGGACTAAGCCT,,,,,,,0,0,8381739,0,8215114,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351321,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706485,,mES_ai2_s2_cell96,mES_ai2_s2_cell96,Mus_musculus (NCBIm37),,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,96, -4,6200285,6946_4_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381739,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, -5,8269740,EGAN00001173643,,,,,No PCR,,,,,,,,0,0,8381740,0,8269740,Human,9606,S0814,standard,,from:300 to:500,EGAN00001173643,,Homo sapiens,0,,,PD14393b,1712041,,PD14393b_wg,PD14393b,,,168,EGAS00001000290,1,0,0,Wholegenome libraries will be prepared.,2239,MPN Whole Genomes,Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT),0,Myeloproliferative Disease Whole Genomes,, -6,8324592,ERS354532,,GAGATTCC,TAATCTTA,,Pre-quality controlled,GAGATTCCTAATCTTA,,,,,,,0,0,8381741,0,8324592,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354532,,Mus musculus,0,,RNA,,1694494,,T_BCM1_F4,RT_37,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,64, -6,8324593,ERS354533,,ATTCAGAA,TAATCTTA,,Pre-quality controlled,ATTCAGAATAATCTTA,,,,,,,0,0,8381741,0,8324593,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354533,,Mus musculus,0,,RNA,,1694495,,T_BCM1_F5,RT_38,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,65, -6,6200285,6946_6_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381741,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, -7,8324594,ERS354534,,GAGATTCC,CAGGACGT,,Pre-quality controlled,GAGATTCCCAGGACGT,,,,,,,0,0,8381742,0,8324594,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354534,,Mus musculus,0,,RNA,,1694496,,T_CBF1_G4,RT_39,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,76, -7,8324595,ERS354535,,ATTCAGAA,CAGGACGT,,Pre-quality controlled,ATTCAGAACAGGACGT,,,,,,,0,0,8381742,0,8324595,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354535,,Mus musculus,0,,RNA,,1694497,,T_CBF1_G5,RT_40,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,77, -7,6200285,6946_7_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381742,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, -8,8324596,ERS354536,,GAGATTCC,GTACTGAC,,Pre-quality controlled,GAGATTCCGTACTGAC,,,,,,,0,0,8381743,0,8324596,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354536,,Mus musculus,0,,RNA,,1694498,,T_CBM2_H4,RT_41,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,88, -8,8324597,ERS354537,,ATTCAGAA,GTACTGAC,,Pre-quality controlled,ATTCAGAAGTACTGAC,,,,,,,0,0,8381743,0,8324597,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354537,,Mus musculus,0,,RNA,,1694499,,T_CBM2_H5,RT_42,,,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,89, -8,6200285,6946_8_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381743,0,6200285,,,,standard,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,7809257,ERS323818,,,,,No PCR,,,,,,,,0,0,8381746,0,7809257,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323818,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660679,,SQSCP,Hc_4_BC4_P2_5046_340285,Haemonchus contortus MHco3%2F4.BC4(P2)-5046,Haemonchus_contortus (V1_21June13),,c46e1810-e8aa-11e2-aafd-68b59976a382,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +2,7809258,ERS323819,,,,Fox bait,No PCR,,,,,,,,0,0,8381744,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,SQSCP,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,c4fff7d0-e8aa-11e2-aafd-68b59976a382,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +3,7809258,ERS323819,,,,,No PCR,,,,,,,,0,0,8381745,0,7809258,Haemonchus contortus,6289,S0702,standard,,from:400 to:550,ERS323819,,Haemonchus contortus,0,,25-30 mixed male and female worms%2C strain identity was checked using a panel of 4 microsatellite loci that discriminate Haemonchus contortus strains,,1660680,,SQSCP,Hc_10_BC4_P2_5779_340285,Haemonchus contortus MHco3%2F10.BC4(P2)-5779,Haemonchus_contortus (V1_21June13),,c4fff7d0-e8aa-11e2-aafd-68b59976a382,168,ERP000430,0,0,0,Two H. contortus ivermectin resistance strains have been backcrossed.,1697,Haemonchus contortus Ivermectin Resistance, ,0,Haemonchus contortus Ivermectin Resistance,, +4,8215019,ERS351213,,TAAGGCGA,TAGATCGC,,qPCR only,TAAGGCGATAGATCGC,,,,,,,0,0,8381739,0,8215019,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351213,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706390,,SQSCP,mES_ai2_s2_cell1,mES_ai2_s2_cell1,Mus_musculus (NCBIm37),,455b95c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,1, +4,8215020,ERS351214,,CGTACTAG,TAGATCGC,,qPCR only,CGTACTAGTAGATCGC,,,,,,,0,0,8381739,0,8215020,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351214,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706391,,SQSCP,mES_ai2_s2_cell2,mES_ai2_s2_cell2,Mus_musculus (NCBIm37),,456c5ea0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,2, +4,8215021,ERS351221,,AGGCAGAA,TAGATCGC,,qPCR only,AGGCAGAATAGATCGC,,,,,,,0,0,8381739,0,8215021,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351221,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706392,,SQSCP,mES_ai2_s2_cell3,mES_ai2_s2_cell3,Mus_musculus (NCBIm37),,457b2bb0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,3, +4,8215022,ERS351222,,TCCTGAGC,TAGATCGC,,qPCR only,TCCTGAGCTAGATCGC,,,,,,,0,0,8381739,0,8215022,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351222,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706393,,SQSCP,mES_ai2_s2_cell4,mES_ai2_s2_cell4,Mus_musculus (NCBIm37),,458a46e0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,4, +4,8215023,ERS351223,,GGACTCCT,TAGATCGC,,qPCR only,GGACTCCTTAGATCGC,,,,,,,0,0,8381739,0,8215023,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351223,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706394,,SQSCP,mES_ai2_s2_cell5,mES_ai2_s2_cell5,Mus_musculus (NCBIm37),,45adfb80-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,5, +4,8215024,ERS351224,,TAGGCATG,TAGATCGC,,qPCR only,TAGGCATGTAGATCGC,,,,,,,0,0,8381739,0,8215024,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351224,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706395,,SQSCP,mES_ai2_s2_cell6,mES_ai2_s2_cell6,Mus_musculus (NCBIm37),,45c5a230-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,6, +4,8215025,ERS351225,,CTCTCTAC,TAGATCGC,,qPCR only,CTCTCTACTAGATCGC,,,,,,,0,0,8381739,0,8215025,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351225,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706396,,SQSCP,mES_ai2_s2_cell7,mES_ai2_s2_cell7,Mus_musculus (NCBIm37),,45d97850-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,7, +4,8215026,ERS351218,,CAGAGAGG,TAGATCGC,,qPCR only,CAGAGAGGTAGATCGC,,,,,,,0,0,8381739,0,8215026,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351218,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706397,,SQSCP,mES_ai2_s2_cell8,mES_ai2_s2_cell8,Mus_musculus (NCBIm37),,45e44dc0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,8, +4,8215027,ERS351219,,GCTACGCT,TAGATCGC,,qPCR only,GCTACGCTTAGATCGC,,,,,,,0,0,8381739,0,8215027,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351219,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706398,,SQSCP,mES_ai2_s2_cell9,mES_ai2_s2_cell9,Mus_musculus (NCBIm37),,45f05bb0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,9, +4,8215028,ERS351220,,CGAGGCTG,TAGATCGC,,qPCR only,CGAGGCTGTAGATCGC,,,,,,,0,0,8381739,0,8215028,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351220,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706399,,SQSCP,mES_ai2_s2_cell10,mES_ai2_s2_cell10,Mus_musculus (NCBIm37),,45fc69a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,10, +4,8215029,ERS351235,,AAGAGGCA,TAGATCGC,,qPCR only,AAGAGGCATAGATCGC,,,,,,,0,0,8381739,0,8215029,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351235,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706400,,SQSCP,mES_ai2_s2_cell11,mES_ai2_s2_cell11,Mus_musculus (NCBIm37),,46082970-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,11, +4,8215030,ERS351237,,GTAGAGGA,TAGATCGC,,qPCR only,GTAGAGGATAGATCGC,,,,,,,0,0,8381739,0,8215030,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351237,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706401,,SQSCP,mES_ai2_s2_cell12,mES_ai2_s2_cell12,Mus_musculus (NCBIm37),,46137410-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,12, +4,8215031,ERS351238,,TAAGGCGA,CTCTCTAT,,qPCR only,TAAGGCGACTCTCTAT,,,,,,,0,0,8381739,0,8215031,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351238,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706402,,SQSCP,mES_ai2_s2_cell13,mES_ai2_s2_cell13,Mus_musculus (NCBIm37),,461e97a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,13, +4,8215032,ERS351239,,CGTACTAG,CTCTCTAT,,qPCR only,CGTACTAGCTCTCTAT,,,,,,,0,0,8381739,0,8215032,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351239,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706403,,SQSCP,mES_ai2_s2_cell14,mES_ai2_s2_cell14,Mus_musculus (NCBIm37),,462af3b0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,14, +4,8215033,ERS351241,,AGGCAGAA,CTCTCTAT,,qPCR only,AGGCAGAACTCTCTAT,,,,,,,0,0,8381739,0,8215033,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351241,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706404,,SQSCP,mES_ai2_s2_cell15,mES_ai2_s2_cell15,Mus_musculus (NCBIm37),,46388840-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,15, +4,8215034,ERS351226,,TCCTGAGC,CTCTCTAT,,qPCR only,TCCTGAGCCTCTCTAT,,,,,,,0,0,8381739,0,8215034,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351226,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706405,,SQSCP,mES_ai2_s2_cell16,mES_ai2_s2_cell16,Mus_musculus (NCBIm37),,46698350-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,16, +4,8215035,ERS351227,,GGACTCCT,CTCTCTAT,,qPCR only,GGACTCCTCTCTCTAT,,,,,,,0,0,8381739,0,8215035,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351227,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706406,,SQSCP,mES_ai2_s2_cell17,mES_ai2_s2_cell17,Mus_musculus (NCBIm37),,46826280-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,17, +4,8215036,ERS351234,,TAGGCATG,CTCTCTAT,,qPCR only,TAGGCATGCTCTCTAT,,,,,,,0,0,8381739,0,8215036,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351234,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706407,,SQSCP,mES_ai2_s2_cell18,mES_ai2_s2_cell18,Mus_musculus (NCBIm37),,4691a4c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,18, +4,8215037,ERS351236,,CTCTCTAC,CTCTCTAT,,qPCR only,CTCTCTACCTCTCTAT,,,,,,,0,0,8381739,0,8215037,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351236,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706408,,SQSCP,mES_ai2_s2_cell19,mES_ai2_s2_cell19,Mus_musculus (NCBIm37),,469e4ef0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,19, +4,8215038,ERS351247,,CAGAGAGG,CTCTCTAT,,qPCR only,CAGAGAGGCTCTCTAT,,,,,,,0,0,8381739,0,8215038,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351247,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706409,,SQSCP,mES_ai2_s2_cell20,mES_ai2_s2_cell20,Mus_musculus (NCBIm37),,46aaab00-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,20, +4,8215039,ERS351249,,GCTACGCT,CTCTCTAT,,qPCR only,GCTACGCTCTCTCTAT,,,,,,,0,0,8381739,0,8215039,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351249,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706410,,SQSCP,mES_ai2_s2_cell21,mES_ai2_s2_cell21,Mus_musculus (NCBIm37),,46b7ca60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,21, +4,8215040,ERS351251,,CGAGGCTG,CTCTCTAT,,qPCR only,CGAGGCTGCTCTCTAT,,,,,,,0,0,8381739,0,8215040,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351251,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706411,,SQSCP,mES_ai2_s2_cell22,mES_ai2_s2_cell22,Mus_musculus (NCBIm37),,46c58600-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,22, +4,8215041,ERS351252,,AAGAGGCA,CTCTCTAT,,qPCR only,AAGAGGCACTCTCTAT,,,,,,,0,0,8381739,0,8215041,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351252,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706412,,SQSCP,mES_ai2_s2_cell23,mES_ai2_s2_cell23,Mus_musculus (NCBIm37),,46d27e50-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,23, +4,8215042,ERS351242,,GTAGAGGA,CTCTCTAT,,qPCR only,GTAGAGGACTCTCTAT,,,,,,,0,0,8381739,0,8215042,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351242,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706413,,SQSCP,mES_ai2_s2_cell24,mES_ai2_s2_cell24,Mus_musculus (NCBIm37),,46e2aaf0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,24, +4,8215043,ERS351243,,TAAGGCGA,TATCCTCT,,qPCR only,TAAGGCGATATCCTCT,,,,,,,0,0,8381739,0,8215043,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351243,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706414,,SQSCP,mES_ai2_s2_cell25,mES_ai2_s2_cell25,Mus_musculus (NCBIm37),,46f65a00-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,25, +4,8215044,ERS351244,,CGTACTAG,TATCCTCT,,qPCR only,CGTACTAGTATCCTCT,,,,,,,0,0,8381739,0,8215044,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351244,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706415,,SQSCP,mES_ai2_s2_cell26,mES_ai2_s2_cell26,Mus_musculus (NCBIm37),,4708a980-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,26, +4,8215045,ERS351245,,AGGCAGAA,TATCCTCT,,qPCR only,AGGCAGAATATCCTCT,,,,,,,0,0,8381739,0,8215045,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351245,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706416,,SQSCP,mES_ai2_s2_cell27,mES_ai2_s2_cell27,Mus_musculus (NCBIm37),,4718d620-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,27, +4,8215046,ERS351248,,TCCTGAGC,TATCCTCT,,qPCR only,TCCTGAGCTATCCTCT,,,,,,,0,0,8381739,0,8215046,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351248,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706417,,SQSCP,mES_ai2_s2_cell28,mES_ai2_s2_cell28,Mus_musculus (NCBIm37),,47277c20-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,28, +4,8215047,ERS351250,,GGACTCCT,TATCCTCT,,qPCR only,GGACTCCTTATCCTCT,,,,,,,0,0,8381739,0,8215047,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351250,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706418,,SQSCP,mES_ai2_s2_cell29,mES_ai2_s2_cell29,Mus_musculus (NCBIm37),,4734c290-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,29, +4,8215048,ERS351260,,TAGGCATG,TATCCTCT,,qPCR only,TAGGCATGTATCCTCT,,,,,,,0,0,8381739,0,8215048,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351260,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706419,,SQSCP,mES_ai2_s2_cell30,mES_ai2_s2_cell30,Mus_musculus (NCBIm37),,47427e30-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,30, +4,8215049,ERS351261,,CTCTCTAC,TATCCTCT,,qPCR only,CTCTCTACTATCCTCT,,,,,,,0,0,8381739,0,8215049,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351261,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706420,,SQSCP,mES_ai2_s2_cell31,mES_ai2_s2_cell31,Mus_musculus (NCBIm37),,475b5d60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,31, +4,8215050,ERS351254,,CAGAGAGG,TATCCTCT,,qPCR only,CAGAGAGGTATCCTCT,,,,,,,0,0,8381739,0,8215050,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351254,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706421,,SQSCP,mES_ai2_s2_cell32,mES_ai2_s2_cell32,Mus_musculus (NCBIm37),,476b8a00-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,32, +4,8215051,ERS351255,,GCTACGCT,TATCCTCT,,qPCR only,GCTACGCTTATCCTCT,,,,,,,0,0,8381739,0,8215051,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351255,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706422,,SQSCP,mES_ai2_s2_cell33,mES_ai2_s2_cell33,Mus_musculus (NCBIm37),,477dd980-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,33, +4,8215052,ERS351256,,CGAGGCTG,TATCCTCT,,qPCR only,CGAGGCTGTATCCTCT,,,,,,,0,0,8381739,0,8215052,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351256,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706423,,SQSCP,mES_ai2_s2_cell34,mES_ai2_s2_cell34,Mus_musculus (NCBIm37),,478ea260-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,34, +4,8215053,ERS351257,,AAGAGGCA,TATCCTCT,,qPCR only,AAGAGGCATATCCTCT,,,,,,,0,0,8381739,0,8215053,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351257,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706424,,SQSCP,mES_ai2_s2_cell35,mES_ai2_s2_cell35,Mus_musculus (NCBIm37),,47a314c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,35, +4,8215054,ERS351258,,GTAGAGGA,TATCCTCT,,qPCR only,GTAGAGGATATCCTCT,,,,,,,0,0,8381739,0,8215054,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351258,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706425,,SQSCP,mES_ai2_s2_cell36,mES_ai2_s2_cell36,Mus_musculus (NCBIm37),,47b6c3d0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,36, +4,8215055,ERS351259,,TAAGGCGA,AGAGTAGA,,qPCR only,TAAGGCGAAGAGTAGA,,,,,,,0,0,8381739,0,8215055,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351259,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706426,,SQSCP,mES_ai2_s2_cell37,mES_ai2_s2_cell37,Mus_musculus (NCBIm37),,47ce1c60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,37, +4,8215056,ERS351269,,CGTACTAG,AGAGTAGA,,qPCR only,CGTACTAGAGAGTAGA,,,,,,,0,0,8381739,0,8215056,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351269,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706427,,SQSCP,mES_ai2_s2_cell38,mES_ai2_s2_cell38,Mus_musculus (NCBIm37),,47e2b5d0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,38, +4,8215057,ERS351271,,AGGCAGAA,AGAGTAGA,,qPCR only,AGGCAGAAAGAGTAGA,,,,,,,0,0,8381739,0,8215057,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351271,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706428,,SQSCP,mES_ai2_s2_cell39,mES_ai2_s2_cell39,Mus_musculus (NCBIm37),,47f182e0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,39, +4,8215058,ERS351262,,TCCTGAGC,AGAGTAGA,,qPCR only,TCCTGAGCAGAGTAGA,,,,,,,0,0,8381739,0,8215058,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351262,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706429,,SQSCP,mES_ai2_s2_cell40,mES_ai2_s2_cell40,Mus_musculus (NCBIm37),,48064360-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,40, +4,8215059,ERS351263,,GGACTCCT,AGAGTAGA,,qPCR only,GGACTCCTAGAGTAGA,,,,,,,0,0,8381739,0,8215059,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351263,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706430,,SQSCP,mES_ai2_s2_cell41,mES_ai2_s2_cell41,Mus_musculus (NCBIm37),,48181db0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,41, +4,8215060,ERS351264,,TAGGCATG,AGAGTAGA,,qPCR only,TAGGCATGAGAGTAGA,,,,,,,0,0,8381739,0,8215060,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351264,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706431,,SQSCP,mES_ai2_s2_cell42,mES_ai2_s2_cell42,Mus_musculus (NCBIm37),,4827fc30-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,42, +4,8215061,ERS351266,,CTCTCTAC,AGAGTAGA,,qPCR only,CTCTCTACAGAGTAGA,,,,,,,0,0,8381739,0,8215061,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351266,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706432,,SQSCP,mES_ai2_s2_cell43,mES_ai2_s2_cell43,Mus_musculus (NCBIm37),,48345840-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,43, +4,8215062,ERS351267,,CAGAGAGG,AGAGTAGA,,qPCR only,CAGAGAGGAGAGTAGA,,,,,,,0,0,8381739,0,8215062,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351267,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706433,,SQSCP,mES_ai2_s2_cell44,mES_ai2_s2_cell44,Mus_musculus (NCBIm37),,48415090-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,44, +4,8215063,ERS351268,,GCTACGCT,AGAGTAGA,,qPCR only,GCTACGCTAGAGTAGA,,,,,,,0,0,8381739,0,8215063,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351268,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706434,,SQSCP,mES_ai2_s2_cell45,mES_ai2_s2_cell45,Mus_musculus (NCBIm37),,484dd3b0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,45, +4,8215064,ERS351270,,CGAGGCTG,AGAGTAGA,,qPCR only,CGAGGCTGAGAGTAGA,,,,,,,0,0,8381739,0,8215064,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351270,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706435,,SQSCP,mES_ai2_s2_cell46,mES_ai2_s2_cell46,Mus_musculus (NCBIm37),,485a7de0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,46, +4,8215065,ERS351272,,AAGAGGCA,AGAGTAGA,,qPCR only,AAGAGGCAAGAGTAGA,,,,,,,0,0,8381739,0,8215065,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351272,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706436,,SQSCP,mES_ai2_s2_cell47,mES_ai2_s2_cell47,Mus_musculus (NCBIm37),,48670100-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,47, +4,8215066,ERS351273,,GTAGAGGA,AGAGTAGA,,qPCR only,GTAGAGGAAGAGTAGA,,,,,,,0,0,8381739,0,8215066,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351273,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706437,,SQSCP,mES_ai2_s2_cell48,mES_ai2_s2_cell48,Mus_musculus (NCBIm37),,48733600-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,48, +4,8215067,ERS351275,,TAAGGCGA,GTAAGGAG,,qPCR only,TAAGGCGAGTAAGGAG,,,,,,,0,0,8381739,0,8215067,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351275,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706438,,SQSCP,mES_ai2_s2_cell49,mES_ai2_s2_cell49,Mus_musculus (NCBIm37),,48807c70-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,49, +4,8215068,ERS351277,,CGTACTAG,GTAAGGAG,,qPCR only,CGTACTAGGTAAGGAG,,,,,,,0,0,8381739,0,8215068,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351277,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706439,,SQSCP,mES_ai2_s2_cell50,mES_ai2_s2_cell50,Mus_musculus (NCBIm37),,488cd880-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,50, +4,8215069,ERS351278,,AGGCAGAA,GTAAGGAG,,qPCR only,AGGCAGAAGTAAGGAG,,,,,,,0,0,8381739,0,8215069,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351278,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706440,,SQSCP,mES_ai2_s2_cell51,mES_ai2_s2_cell51,Mus_musculus (NCBIm37),,489982b0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,51, +4,8215070,ERS351279,,TCCTGAGC,GTAAGGAG,,qPCR only,TCCTGAGCGTAAGGAG,,,,,,,0,0,8381739,0,8215070,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351279,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706441,,SQSCP,mES_ai2_s2_cell52,mES_ai2_s2_cell52,Mus_musculus (NCBIm37),,48a5dec0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,52, +4,8215071,ERS351280,,GGACTCCT,GTAAGGAG,,qPCR only,GGACTCCTGTAAGGAG,,,,,,,0,0,8381739,0,8215071,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351280,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706442,,SQSCP,mES_ai2_s2_cell53,mES_ai2_s2_cell53,Mus_musculus (NCBIm37),,48b3c170-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,53, +4,8215072,ERS351281,,TAGGCATG,GTAAGGAG,,qPCR only,TAGGCATGGTAAGGAG,,,,,,,0,0,8381739,0,8215072,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351281,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706443,,SQSCP,mES_ai2_s2_cell54,mES_ai2_s2_cell54,Mus_musculus (NCBIm37),,48c06ba0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,54, +4,8215073,ERS351282,,CTCTCTAC,GTAAGGAG,,qPCR only,CTCTCTACGTAAGGAG,,,,,,,0,0,8381739,0,8215073,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351282,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706444,,SQSCP,mES_ai2_s2_cell55,mES_ai2_s2_cell55,Mus_musculus (NCBIm37),,48d468d0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,55, +4,8215074,ERS351274,,CAGAGAGG,GTAAGGAG,,qPCR only,CAGAGAGGGTAAGGAG,,,,,,,0,0,8381739,0,8215074,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351274,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706445,,SQSCP,mES_ai2_s2_cell56,mES_ai2_s2_cell56,Mus_musculus (NCBIm37),,48e38400-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,56, +4,8215075,ERS351276,,GCTACGCT,GTAAGGAG,,qPCR only,GCTACGCTGTAAGGAG,,,,,,,0,0,8381739,0,8215075,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351276,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706446,,SQSCP,mES_ai2_s2_cell57,mES_ai2_s2_cell57,Mus_musculus (NCBIm37),,48f3b0a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,57, +4,8215076,ERS351285,,CGAGGCTG,GTAAGGAG,,qPCR only,CGAGGCTGGTAAGGAG,,,,,,,0,0,8381739,0,8215076,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351285,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706447,,SQSCP,mES_ai2_s2_cell58,mES_ai2_s2_cell58,Mus_musculus (NCBIm37),,49034100-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,58, +4,8215077,ERS351286,,AAGAGGCA,GTAAGGAG,,qPCR only,AAGAGGCAGTAAGGAG,,,,,,,0,0,8381739,0,8215077,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351286,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706448,,SQSCP,mES_ai2_s2_cell59,mES_ai2_s2_cell59,Mus_musculus (NCBIm37),,49134690-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,59, +4,8215078,ERS351287,,GTAGAGGA,GTAAGGAG,,qPCR only,GTAGAGGAGTAAGGAG,,,,,,,0,0,8381739,0,8215078,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351287,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706449,,SQSCP,mES_ai2_s2_cell60,mES_ai2_s2_cell60,Mus_musculus (NCBIm37),,4923e860-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,60, +4,8215079,ERS351288,,TAAGGCGA,ACTGCATA,,qPCR only,TAAGGCGAACTGCATA,,,,,,,0,0,8381739,0,8215079,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351288,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706450,,SQSCP,mES_ai2_s2_cell61,mES_ai2_s2_cell61,Mus_musculus (NCBIm37),,493f1180-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,61, +4,8215080,ERS351289,,CGTACTAG,ACTGCATA,,qPCR only,CGTACTAGACTGCATA,,,,,,,0,0,8381739,0,8215080,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351289,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706451,,SQSCP,mES_ai2_s2_cell62,mES_ai2_s2_cell62,Mus_musculus (NCBIm37),,49566a10-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,62, +4,8215081,ERS351290,,AGGCAGAA,ACTGCATA,,qPCR only,AGGCAGAAACTGCATA,,,,,,,0,0,8381739,0,8215081,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351290,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706452,,SQSCP,mES_ai2_s2_cell63,mES_ai2_s2_cell63,Mus_musculus (NCBIm37),,49692ec0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,63, +4,8215082,ERS351283,,TCCTGAGC,ACTGCATA,,qPCR only,TCCTGAGCACTGCATA,,,,,,,0,0,8381739,0,8215082,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351283,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706453,,SQSCP,mES_ai2_s2_cell64,mES_ai2_s2_cell64,Mus_musculus (NCBIm37),,497b7e40-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,64, +4,8215083,ERS351284,,GGACTCCT,ACTGCATA,,qPCR only,GGACTCCTACTGCATA,,,,,,,0,0,8381739,0,8215083,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351284,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706454,,SQSCP,mES_ai2_s2_cell65,mES_ai2_s2_cell65,Mus_musculus (NCBIm37),,499324f0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,65, +4,8215084,ERS351292,,TAGGCATG,ACTGCATA,,qPCR only,TAGGCATGACTGCATA,,,,,,,0,0,8381739,0,8215084,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351292,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706455,,SQSCP,mES_ai2_s2_cell66,mES_ai2_s2_cell66,Mus_musculus (NCBIm37),,49a5e9a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,66, +4,8215085,ERS351293,,CTCTCTAC,ACTGCATA,,qPCR only,CTCTCTACACTGCATA,,,,,,,0,0,8381739,0,8215085,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351293,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706456,,SQSCP,mES_ai2_s2_cell67,mES_ai2_s2_cell67,Mus_musculus (NCBIm37),,49b92380-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,67, +4,8215086,ERS351294,,CAGAGAGG,ACTGCATA,,qPCR only,CAGAGAGGACTGCATA,,,,,,,0,0,8381739,0,8215086,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351294,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706457,,SQSCP,mES_ai2_s2_cell68,mES_ai2_s2_cell68,Mus_musculus (NCBIm37),,49cc8470-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,68, +4,8215087,ERS351295,,GCTACGCT,ACTGCATA,,qPCR only,GCTACGCTACTGCATA,,,,,,,0,0,8381739,0,8215087,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351295,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706458,,SQSCP,mES_ai2_s2_cell69,mES_ai2_s2_cell69,Mus_musculus (NCBIm37),,49df9740-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,69, +4,8215088,ERS351296,,CGAGGCTG,ACTGCATA,,qPCR only,CGAGGCTGACTGCATA,,,,,,,0,0,8381739,0,8215088,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351296,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706459,,SQSCP,mES_ai2_s2_cell70,mES_ai2_s2_cell70,Mus_musculus (NCBIm37),,49f2aa10-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,70, +4,8215089,ERS351297,,AAGAGGCA,ACTGCATA,,qPCR only,AAGAGGCAACTGCATA,,,,,,,0,0,8381739,0,8215089,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351297,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706460,,SQSCP,mES_ai2_s2_cell71,mES_ai2_s2_cell71,Mus_musculus (NCBIm37),,4a05bce0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,71, +4,8215090,ERS351291,,GTAGAGGA,ACTGCATA,,qPCR only,GTAGAGGAACTGCATA,,,,,,,0,0,8381739,0,8215090,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351291,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706461,,SQSCP,mES_ai2_s2_cell72,mES_ai2_s2_cell72,Mus_musculus (NCBIm37),,4a2308e0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,72, +4,8215091,ERS351299,,TAAGGCGA,AAGGAGTA,,qPCR only,TAAGGCGAAAGGAGTA,,,,,,,0,0,8381739,0,8215091,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351299,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706462,,SQSCP,mES_ai2_s2_cell73,mES_ai2_s2_cell73,Mus_musculus (NCBIm37),,4a388cb0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,73, +4,8215092,ERS351301,,CGTACTAG,AAGGAGTA,,qPCR only,CGTACTAGAAGGAGTA,,,,,,,0,0,8381739,0,8215092,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351301,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706463,,SQSCP,mES_ai2_s2_cell74,mES_ai2_s2_cell74,Mus_musculus (NCBIm37),,4a4d2620-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,74, +4,8215093,ERS351302,,AGGCAGAA,AAGGAGTA,,qPCR only,AGGCAGAAAAGGAGTA,,,,,,,0,0,8381739,0,8215093,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351302,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706464,,SQSCP,mES_ai2_s2_cell75,mES_ai2_s2_cell75,Mus_musculus (NCBIm37),,4a631f20-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,75, +4,8215094,ERS351303,,TCCTGAGC,AAGGAGTA,,qPCR only,TCCTGAGCAAGGAGTA,,,,,,,0,0,8381739,0,8215094,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351303,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706465,,SQSCP,mES_ai2_s2_cell76,mES_ai2_s2_cell76,Mus_musculus (NCBIm37),,4a7c4c70-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,76, +4,8215095,ERS351304,,GGACTCCT,AAGGAGTA,,qPCR only,GGACTCCTAAGGAGTA,,,,,,,0,0,8381739,0,8215095,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351304,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706466,,SQSCP,mES_ai2_s2_cell77,mES_ai2_s2_cell77,Mus_musculus (NCBIm37),,4a8b67a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,77, +4,8215096,ERS351305,,TAGGCATG,AAGGAGTA,,qPCR only,TAGGCATGAAGGAGTA,,,,,,,0,0,8381739,0,8215096,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351305,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706467,,SQSCP,mES_ai2_s2_cell78,mES_ai2_s2_cell78,Mus_musculus (NCBIm37),,4aa27210-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,78, +4,8215097,ERS351306,,CTCTCTAC,AAGGAGTA,,qPCR only,CTCTCTACAAGGAGTA,,,,,,,0,0,8381739,0,8215097,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351306,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706468,,SQSCP,mES_ai2_s2_cell79,mES_ai2_s2_cell79,Mus_musculus (NCBIm37),,4aaf4350-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,79, +4,8215098,ERS351298,,CAGAGAGG,AAGGAGTA,,qPCR only,CAGAGAGGAAGGAGTA,,,,,,,0,0,8381739,0,8215098,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351298,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706469,,SQSCP,mES_ai2_s2_cell80,mES_ai2_s2_cell80,Mus_musculus (NCBIm37),,4abab500-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,80, +4,8215099,ERS351300,,GCTACGCT,AAGGAGTA,,qPCR only,GCTACGCTAAGGAGTA,,,,,,,0,0,8381739,0,8215099,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351300,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706470,,SQSCP,mES_ai2_s2_cell81,mES_ai2_s2_cell81,Mus_musculus (NCBIm37),,4ac78640-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,81, +4,8215100,ERS351309,,CGAGGCTG,AAGGAGTA,,qPCR only,CGAGGCTGAAGGAGTA,,,,,,,0,0,8381739,0,8215100,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351309,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706471,,SQSCP,mES_ai2_s2_cell82,mES_ai2_s2_cell82,Mus_musculus (NCBIm37),,4ad4f3c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,82, +4,8215101,ERS351310,,AAGAGGCA,AAGGAGTA,,qPCR only,AAGAGGCAAAGGAGTA,,,,,,,0,0,8381739,0,8215101,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351310,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706472,,SQSCP,mES_ai2_s2_cell83,mES_ai2_s2_cell83,Mus_musculus (NCBIm37),,4ae2d670-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,83, +4,8215102,ERS351311,,GTAGAGGA,AAGGAGTA,,qPCR only,GTAGAGGAAAGGAGTA,,,,,,,0,0,8381739,0,8215102,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351311,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706473,,SQSCP,mES_ai2_s2_cell84,mES_ai2_s2_cell84,Mus_musculus (NCBIm37),,4affad40-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,84, +4,8215103,ERS351312,,TAAGGCGA,CTAAGCCT,,qPCR only,TAAGGCGACTAAGCCT,,,,,,,0,0,8381739,0,8215103,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351312,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706474,,SQSCP,mES_ai2_s2_cell85,mES_ai2_s2_cell85,Mus_musculus (NCBIm37),,4b109d30-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,85, +4,8215104,ERS351313,,CGTACTAG,CTAAGCCT,,qPCR only,CGTACTAGCTAAGCCT,,,,,,,0,0,8381739,0,8215104,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351313,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706475,,SQSCP,mES_ai2_s2_cell86,mES_ai2_s2_cell86,Mus_musculus (NCBIm37),,4b266f20-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,86, +4,8215105,ERS351314,,AGGCAGAA,CTAAGCCT,,qPCR only,AGGCAGAACTAAGCCT,,,,,,,0,0,8381739,0,8215105,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351314,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706476,,SQSCP,mES_ai2_s2_cell87,mES_ai2_s2_cell87,Mus_musculus (NCBIm37),,4b395ae0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,87, +4,8215106,ERS351307,,TCCTGAGC,CTAAGCCT,,qPCR only,TCCTGAGCCTAAGCCT,,,,,,,0,0,8381739,0,8215106,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351307,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706477,,SQSCP,mES_ai2_s2_cell88,mES_ai2_s2_cell88,Mus_musculus (NCBIm37),,4b4c94c0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,88, +4,8215107,ERS351308,,GGACTCCT,CTAAGCCT,,qPCR only,GGACTCCTCTAAGCCT,,,,,,,0,0,8381739,0,8215107,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351308,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706478,,SQSCP,mES_ai2_s2_cell89,mES_ai2_s2_cell89,Mus_musculus (NCBIm37),,4b60e010-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,89, +4,8215108,ERS351315,,TAGGCATG,CTAAGCCT,,qPCR only,TAGGCATGCTAAGCCT,,,,,,,0,0,8381739,0,8215108,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351315,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706479,,SQSCP,mES_ai2_s2_cell90,mES_ai2_s2_cell90,Mus_musculus (NCBIm37),,4b74b630-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,90, +4,8215109,ERS351316,,CTCTCTAC,CTAAGCCT,,qPCR only,CTCTCTACCTAAGCCT,,,,,,,0,0,8381739,0,8215109,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351316,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706480,,SQSCP,mES_ai2_s2_cell91,mES_ai2_s2_cell91,Mus_musculus (NCBIm37),,4b890180-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,91, +4,8215110,ERS351317,,CAGAGAGG,CTAAGCCT,,qPCR only,CAGAGAGGCTAAGCCT,,,,,,,0,0,8381739,0,8215110,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351317,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706481,,SQSCP,mES_ai2_s2_cell92,mES_ai2_s2_cell92,Mus_musculus (NCBIm37),,4b9cd7a0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,92, +4,8215111,ERS351318,,GCTACGCT,CTAAGCCT,,qPCR only,GCTACGCTCTAAGCCT,,,,,,,0,0,8381739,0,8215111,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351318,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706482,,SQSCP,mES_ai2_s2_cell93,mES_ai2_s2_cell93,Mus_musculus (NCBIm37),,4bafea70-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,93, +4,8215112,ERS351319,,CGAGGCTG,CTAAGCCT,,qPCR only,CGAGGCTGCTAAGCCT,,,,,,,0,0,8381739,0,8215112,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351319,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706483,,SQSCP,mES_ai2_s2_cell94,mES_ai2_s2_cell94,Mus_musculus (NCBIm37),,4bc5bc60-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,94, +4,8215113,ERS351320,,AAGAGGCA,CTAAGCCT,,qPCR only,AAGAGGCACTAAGCCT,,,,,,,0,0,8381739,0,8215113,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351320,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706484,,SQSCP,mES_ai2_s2_cell95,mES_ai2_s2_cell95,Mus_musculus (NCBIm37),,4bd8a820-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,95, +4,8215114,ERS351321,,GTAGAGGA,CTAAGCCT,,qPCR only,GTAGAGGACTAAGCCT,,,,,,,0,0,8381739,0,8215114,mus musculus,10090,S0917,standard,,from:300 to:1000,ERS351321,,Mus Musculus,0,,mRNAseq Nextera library made from G4 ES cell line from a male blastocyst from a C57BL%2F6Ncr male x 129S6%2FSvEvTac female,,1706485,,SQSCP,mES_ai2_s2_cell96,mES_ai2_s2_cell96,Mus_musculus (NCBIm37),,4beb6cd0-25c2-11e3-96eb-68b59976a382,168,ERP003293,1,0,0,This study aims to investigate%0D%0A,2658,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency,Mus_musculus (NCBIm37),0,Single-cell analysis of the transcriptomic heterogeneity of ground state pluripotency ,96, +4,6200285,6946_4_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381739,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +5,8269740,EGAN00001173643,,,,,No PCR,,,,,,,,0,0,8381740,0,8269740,Human,9606,S0814,standard,,from:300 to:500,EGAN00001173643,,Homo sapiens,0,,,PD14393b,1712041,,SQSCP,PD14393b_wg,PD14393b,,,b8754460-2b5e-11e3-bfef-68b59976a382,168,EGAS00001000290,1,0,0,Wholegenome libraries will be prepared.,2239,MPN Whole Genomes,Homo_sapiens (CGP_GRCh37.NCBI.allchr_MT),0,Myeloproliferative Disease Whole Genomes,, +6,8324592,ERS354532,,GAGATTCC,TAATCTTA,,Pre-quality controlled,GAGATTCCTAATCTTA,,,,,,,0,0,8381741,0,8324592,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354532,,Mus musculus,0,,RNA,,1694494,,SQSCP,T_BCM1_F4,RT_37,,,62a06c60-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,64, +6,8324593,ERS354533,,ATTCAGAA,TAATCTTA,,Pre-quality controlled,ATTCAGAATAATCTTA,,,,,,,0,0,8381741,0,8324593,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354533,,Mus musculus,0,,RNA,,1694495,,SQSCP,T_BCM1_F5,RT_38,,,62ae4f10-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,65, +6,6200285,6946_6_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381741,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +7,8324594,ERS354534,,GAGATTCC,CAGGACGT,,Pre-quality controlled,GAGATTCCCAGGACGT,,,,,,,0,0,8381742,0,8324594,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354534,,Mus musculus,0,,RNA,,1694496,,SQSCP,T_CBF1_G4,RT_39,,,62baab20-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,76, +7,8324595,ERS354535,,ATTCAGAA,CAGGACGT,,Pre-quality controlled,ATTCAGAACAGGACGT,,,,,,,0,0,8381742,0,8324595,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354535,,Mus musculus,0,,RNA,,1694497,,SQSCP,T_CBF1_G5,RT_40,,,62c95120-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,77, +7,6200285,6946_7_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381742,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, +8,8324596,ERS354536,,GAGATTCC,GTACTGAC,,Pre-quality controlled,GAGATTCCGTACTGAC,,,,,,,0,0,8381743,0,8324596,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354536,,Mus musculus,0,,RNA,,1694498,,SQSCP,T_CBM2_H4,RT_41,,,62d69790-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,88, +8,8324597,ERS354537,,ATTCAGAA,GTACTGAC,,Pre-quality controlled,ATTCAGAAGTACTGAC,,,,,,,0,0,8381743,0,8324597,Mouse,10090,S1553,standard,,from:100 to:1000,ERS354537,,Mus musculus,0,,RNA,,1694499,,SQSCP,T_CBM2_H5,RT_42,,,62e64f00-2139-11e3-b2c2-68b59976a382,168,ERP002223,1,0,0,In order to examine the impact of genetic variation on epigenetic marking and control of gene expression.,2501,Mouse model to quantify genotype-epigenotype variations_RNA,Mus_musculus (GRCm38),0,Mouse model to quantify genotype-epigenotype variations ,89, +8,6200285,6946_8_ACAACGCAAT,,ACAACGCAAT,,,,ACAACGCAAT,,,,,,,1,0,8381743,0,6200285,,,,standard,,,,,,,,,,,,,,,,,,168,,1,0,0,None,198,Illumina Controls, ,0,,168, diff --git a/t/data/samplesheet/6946_extended.csv b/t/data/samplesheet/6946_extended.csv index b2522a74e..9b6facfa2 100644 --- a/t/data/samplesheet/6946_extended.csv +++ b/t/data/samplesheet/6946_extended.csv @@ -1,14 +1,14 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Sample_ID,Sample_Name,GenomeFolder,Index,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -3789278,Salmonella pullorum,,ATCACGTT,,Standard,ATCACGTT,,,,,,,0,0,3789299,0,3789278,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289832,,sp200shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,1, -3789279,Bordetella Pertussis,,CGATGTTT,,Standard,CGATGTTT,,,,,,,0,0,3789299,0,3789279,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289833,,bp200shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,2, -3789280,Plasmodium Falciparum,,TTAGGCAT,,Standard,TTAGGCAT,,,,,,,0,0,3789299,0,3789280,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289834,,3D7200shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,3, -3789281,Homo sapiens,,TGACCACT,,Standard,TGACCACT,,,,,,,0,0,3789299,0,3789281,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,1,,genomic DNA,,1289835,,human200shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,4, -3789282,Salmonella pullorum,,ACAGTGGT,,Standard,ACAGTGGT,,,,,,,0,0,3789299,0,3789282,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289836,,sp300shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,5, -3789283,Bordetella Pertussis,,GCCAATGT,,Standard,GCCAATGT,,,,,,,0,0,3789299,0,3789283,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289837,,bp300shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,6, -3789284,Plasmodium Falciparum,,CAGATCTG,,Standard,CAGATCTG,,,,,,,0,0,3789299,0,3789284,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289838,,3D7300shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,7, -3789285,Homo sapiens,,ACTTGATG,,Standard,ACTTGATG,,,,,,,0,0,3789299,0,3789285,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289839,,human300shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,8, -3789286,Salmonella pullorum,,GATCAGCG,,Standard,GATCAGCG,,,,,,,0,0,3789299,0,3789286,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289840,,sp400shear,Salmonella pullorum,Salmonella_pullorum (449_87),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,9, -3789287,Bordetella Pertussis,,TAGCTTGT,,Standard,TAGCTTGT,,,,,,,0,0,3789299,0,3789287,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289841,,bp400shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,10, -3789288,Plasmodium Falciparum,,GGCTACAG,,Standard,GGCTACAG,,,,,,,0,0,3789299,0,3789288,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289842,,3D7400shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,11, -3789289,Homo sapiens,,CTTGTACT,,Standard,CTTGTACT,,,,,,,0,0,3789299,0,3789289,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289843,,human400shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,12, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,Index,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +3789278,Salmonella pullorum,,ATCACGTT,,Standard,ATCACGTT,,,,,,,0,0,3789299,0,3789278,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289832,,SQSCP,sp200shear,Salmonella pullorum,Salmonella_pullorum (449_87),,b51b4966-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,1, +3789279,Bordetella Pertussis,,CGATGTTT,,Standard,CGATGTTT,,,,,,,0,0,3789299,0,3789279,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289833,,SQSCP,bp200shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,b5760fb8-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,2, +3789280,Plasmodium Falciparum,,TTAGGCAT,,Standard,TTAGGCAT,,,,,,,0,0,3789299,0,3789280,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289834,,SQSCP,3D7200shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,b589b0cc-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,3, +3789281,Homo sapiens,,TGACCACT,,Standard,TGACCACT,,,,,,,0,0,3789299,0,3789281,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,1,,genomic DNA,,1289835,,SQSCP,human200shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,b5e1b402-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,4, +3789282,Salmonella pullorum,,ACAGTGGT,,Standard,ACAGTGGT,,,,,,,0,0,3789299,0,3789282,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289836,,SQSCP,sp300shear,Salmonella pullorum,Salmonella_pullorum (449_87),,b5f4757e-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,5, +3789283,Bordetella Pertussis,,GCCAATGT,,Standard,GCCAATGT,,,,,,,0,0,3789299,0,3789283,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289837,,SQSCP,bp300shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,b6064740-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,6, +3789284,Plasmodium Falciparum,,CAGATCTG,,Standard,CAGATCTG,,,,,,,0,0,3789299,0,3789284,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289838,,SQSCP,3D7300shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,b65db606-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,7, +3789285,Homo sapiens,,ACTTGATG,,Standard,ACTTGATG,,,,,,,0,0,3789299,0,3789285,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289839,,SQSCP,human300shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,b6790546-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,8, +3789286,Salmonella pullorum,,GATCAGCG,,Standard,GATCAGCG,,,,,,,0,0,3789299,0,3789286,Salmonella pullorum,590,S0696,standard,,from:200 to:700,,,Salmonella pullorum,0,,genomic DNA,,1289840,,SQSCP,sp400shear,Salmonella pullorum,Salmonella_pullorum (449_87),,b694245c-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,9, +3789287,Bordetella Pertussis,,TAGCTTGT,,Standard,TAGCTTGT,,,,,,,0,0,3789299,0,3789287,Bordetella Pertussis,520,S0696,standard,,from:200 to:700,,,Bordetella Pertussis,0,,genomic DNA,,1289841,,SQSCP,bp400shear,Bordetella Pertussis,Bordetella_pertussis (ST24),,b6ea25f0-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,10, +3789288,Plasmodium Falciparum,,GGCTACAG,,Standard,GGCTACAG,,,,,,,0,0,3789299,0,3789288,Plasmodium Falciparum,5820,S0696,standard,,from:200 to:700,,,Plasmodium Falciparum,0,,genomic DNA,,1289842,,SQSCP,3D7400shear,Plasmodium Falciparum,Plasmodium_falciparum (3D7),,b6fb2f58-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,11, +3789289,Homo sapiens,,CTTGTACT,,Standard,CTTGTACT,,,,,,,0,0,3789299,0,3789289,Homo sapiens,9606,S0696,standard,,from:200 to:700,,,Human,0,,genomic DNA,,1289843,,SQSCP,human400shear,Homo sapiens,Homo_sapiens (GRCh37_53) DO_NOT_USE,,b73a3702-f8cc-11e0-8838-68b59976a382,,,1,1,1,I have agreed to alpha test the kapa hifi qPCR kit.,700,Kapa HiFi test, ,1,hifi test,12, diff --git a/t/data/samplesheet/7007_extended.csv b/t/data/samplesheet/7007_extended.csv index b50c7eaf7..41ba8eaf7 100644 --- a/t/data/samplesheet/7007_extended.csv +++ b/t/data/samplesheet/7007_extended.csv @@ -1,3 +1,3 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -3789277,ERS092590,,,qPCR only,,,,,,,,0,0,3911772,0,3789277,Strongyloides ratti,34506,S0702,standard,,from:300 to:400,ERS092590,,Strongyloides ratti,0,,,,1289830,,SriL3_66K_212889,Strongyloides ratti,Strongyloides_ratti (20100601),,,ERP001672,1,0,0,Strongyloides ratti is a common gastro-intestinal parasite of the rat.,521,Strongyloides ratti transcriptomics, ,0,Transcriptome sequencing of Strongyloides ratti,, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +3789277,ERS092590,,,qPCR only,,,,,,,,0,0,3911772,0,3789277,Strongyloides ratti,34506,S0702,standard,,from:300 to:400,ERS092590,,Strongyloides ratti,0,,,,1289830,,SQSCP,SriL3_66K_212889,Strongyloides ratti,Strongyloides_ratti (20100601),,673165ec-f8c6-11e0-8838-68b59976a382,,ERP001672,1,0,0,Strongyloides ratti is a common gastro-intestinal parasite of the rat.,521,Strongyloides ratti transcriptomics, ,0,Transcriptome sequencing of Strongyloides ratti,, diff --git a/t/data/samplesheet/data4merge.csv b/t/data/samplesheet/data4merge.csv new file mode 100644 index 000000000..4fbdc4979 --- /dev/null +++ b/t/data/samplesheet/data4merge.csv @@ -0,0 +1,6 @@ +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,id_run,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863688,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,CLARITY,7592352,,,3547031,673165ec-f8c6-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +2,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863689,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,CLARITY,7592352,,,3547031,673165ec-f8c6-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +3,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863690,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,Traction,7592352,,,3547031,b6ea25f0-f8cc-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +4,22802061,7592352,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863691,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,Traction,7592352,,,3547031,b6ea25f0-f8cc-11e0-8838-68b59976a382,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, diff --git a/t/data/samplesheet/dual_index_extended_new.csv b/t/data/samplesheet/dual_index_extended_new.csv index e90b52e08..f3ea91fc2 100644 --- a/t/data/samplesheet/dual_index_extended_new.csv +++ b/t/data/samplesheet/dual_index_extended_new.csv @@ -1,34 +1,34 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -27037064,EGAN00002490956,,CGTGACAC,TTATTGCG,,Standard,CGTGACAC,TTATTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037064,,9606,S4360,standard,,from:450 to:450,EGAN00002490956,Normal,Homo sapiens,0,,,PD41305k_99,4396647,,6133STDY8786628,PD41305k_99,,PD41305k_99,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,1, -27037100,EGAN00002490958,,ACTTAGAG,CTCCATAA,,Standard,ACTTAGAG,CTCCATAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037100,,9606,S4360,standard,,from:450 to:450,EGAN00002490958,Normal,Homo sapiens,0,,,PD41305k_102,4396650,,6133STDY8786631,PD41305k_102,,PD41305k_102,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,2, -27037112,EGAN00002490960,,TCAGGAAA,CCAAACCC,,Standard,TCAGGAAA,CCAAACCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037112,,9606,S4360,standard,,from:450 to:450,EGAN00002490960,Normal,Homo sapiens,0,,,PD41305k_103,4396651,,6133STDY8786632,PD41305k_103,,PD41305k_103,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,3, -27037089,EGAN00002490966,,CGTCACCA,CTTGTTAA,,Standard,CGTCACCA,CTTGTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037089,,9606,S4360,standard,,from:450 to:450,EGAN00002490966,Normal,Homo sapiens,0,,,PD41305k_109,4396657,,6133STDY8786638,PD41305k_109,,PD41305k_109,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,4, -27037101,EGAN00002490967,,GTGTTTCT,AAAGTGCG,,Standard,GTGTTTCT,AAAGTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037101,,9606,S4360,standard,,from:450 to:450,EGAN00002490967,Normal,Homo sapiens,0,,,PD41305k_110,4396658,,6133STDY8786639,PD41305k_110,,PD41305k_110,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,5, -27037113,EGAN00002490968,,GGCACTCA,AAGTACAG,,Standard,GGCACTCA,AAGTACAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037113,,9606,S4360,standard,,from:450 to:450,EGAN00002490968,Normal,Homo sapiens,0,,,PD41305k_111,4396659,,6133STDY8786640,PD41305k_111,,PD41305k_111,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,6, -27037125,EGAN00002490970,,GTCATCTT,GCGCGCTA,,Standard,GTCATCTT,GCGCGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037125,,9606,S4360,standard,,from:450 to:450,EGAN00002490970,Normal,Homo sapiens,0,,,PD41305k_112,4396660,,6133STDY8786641,PD41305k_112,,PD41305k_112,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,7, -27037090,EGAN00002490973,,AGAGCTTA,TATAAAGC,,Standard,AGAGCTTA,TATAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037090,,9606,S4360,standard,,from:450 to:450,EGAN00002490973,Normal,Homo sapiens,0,,,PD41305k_117,4396665,,6133STDY8786646,PD41305k_117,,PD41305k_117,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,8, -27037114,EGAN00002490976,,CTAAGTCC,TATCAAAG,,Standard,CTAAGTCC,TATCAAAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037114,,9606,S4360,standard,,from:450 to:450,EGAN00002490976,Normal,Homo sapiens,0,,,PD41305k_119,4396667,,6133STDY8786648,PD41305k_119,,PD41305k_119,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,9, -27037091,EGAN00002490982,,GATCTTGA,GTCCCGCA,,Standard,GATCTTGA,GTCCCGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037091,,9606,S4360,standard,,from:450 to:450,EGAN00002490982,Normal,Homo sapiens,0,,,PD41305k_125,4396673,,6133STDY8786654,PD41305k_125,,PD41305k_125,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,10, -27037056,EGAN00002491016,,GCGACTGA,CGCTTCAC,,Standard,GCGACTGA,CGCTTCAC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037056,,9606,S4360,standard,,from:450 to:450,EGAN00002491016,Normal,Homo sapiens,0,,,PD41305k_130,4396678,,6133STDY8786659,PD41305k_130,,PD41305k_130,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,11, -27037104,EGAN00002491020,,TCCGGATT,CACAAGGA,,Standard,TCCGGATT,CACAAGGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037104,,9606,S4360,standard,,from:450 to:450,EGAN00002491020,Normal,Homo sapiens,0,,,PD41305k_134,4396682,,6133STDY8786663,PD41305k_134,,PD41305k_134,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,12, -27037129,EGAN00002491021,,AACGACTG,GAAATTAT,,Standard,AACGACTG,GAAATTAT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037129,,9606,S4360,standard,,from:450 to:450,EGAN00002491021,Normal,Homo sapiens,0,,,PD41305k_136,4396684,,6133STDY8786665,PD41305k_136,,PD41305k_136,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,13, -27037105,EGAN00002491029,,CTCGTGTC,TAGAGATA,,Standard,CTCGTGTC,TAGAGATA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037105,,9606,S4360,standard,,from:450 to:450,EGAN00002491029,Normal,Homo sapiens,0,,,PD41305k_142,4396690,,6133STDY8786671,PD41305k_142,,PD41305k_142,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,14, -27037117,EGAN00002491028,,TGGCGGTC,AGCGTATT,,Standard,TGGCGGTC,AGCGTATT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037117,,9606,S4360,standard,,from:450 to:450,EGAN00002491028,Normal,Homo sapiens,0,,,PD41305k_143,4396691,,6133STDY8786672,PD41305k_143,,PD41305k_143,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,15, -27037058,EGAN00002491033,,TGATTTCC,ACTTCCGA,,Standard,TGATTTCC,ACTTCCGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037058,,9606,S4360,standard,,from:450 to:450,EGAN00002491033,Normal,Homo sapiens,0,,,PD41305k_146,4396694,,6133STDY8786675,PD41305k_146,,PD41305k_146,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,16, -27037094,EGAN00002491035,,TTTAAATG,ACGTTTAA,,Standard,TTTAAATG,ACGTTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037094,,9606,S4360,standard,,from:450 to:450,EGAN00002491035,Normal,Homo sapiens,0,,,PD41305k_149,4396697,,6133STDY8786678,PD41305k_149,,PD41305k_149,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,17, -27037106,EGAN00002491037,,ACCTGCGG,ACGCCGCG,,Standard,ACCTGCGG,ACGCCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037106,,9606,S4360,standard,,from:450 to:450,EGAN00002491037,Normal,Homo sapiens,0,,,PD41305k_150,4396698,,6133STDY8786679,PD41305k_150,,PD41305k_150,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,18, -27037047,EGAN00002491039,,GACCGCAG,GGTCCCTC,,Standard,GACCGCAG,GGTCCCTC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037047,,9606,S4360,standard,,from:450 to:450,EGAN00002491039,Normal,Homo sapiens,0,,,PD41305k_153,4396701,,6133STDY8786682,PD41305k_153,,PD41305k_153,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,19, -27037071,EGAN00002491041,,GTTTCATG,CAAACAAA,,Standard,GTTTCATG,CAAACAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037071,,9606,S4360,standard,,from:450 to:450,EGAN00002491041,Normal,Homo sapiens,0,,,PD41305k_155,4396703,,6133STDY8786684,PD41305k_155,,PD41305k_155,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,20, -27037083,EGAN00002491042,,AAACATCG,ACCAAAGC,,Standard,AAACATCG,ACCAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037083,,9606,S4360,standard,,from:450 to:450,EGAN00002491042,Normal,Homo sapiens,0,,,PD41305k_156,4396704,,6133STDY8786685,PD41305k_156,,PD41305k_156,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,21, -27037048,EGAN00002491047,,GCTGCGCT,CCGATAAA,,Standard,GCTGCGCT,CCGATAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037048,,9606,S4360,standard,,from:450 to:450,EGAN00002491047,Normal,Homo sapiens,0,,,PD41305k_161,4396709,,6133STDY8786690,PD41305k_161,,PD41305k_161,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,22, -27037072,EGAN00002491048,,TGTCAGCT,CGCCGCCC,,Standard,TGTCAGCT,CGCCGCCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037072,,9606,S4360,standard,,from:450 to:450,EGAN00002491048,Normal,Homo sapiens,0,,,PD41305k_163,4396711,,6133STDY8786692,PD41305k_163,,PD41305k_163,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,23, -27037084,EGAN00002490985,,CTCTCCGG,TGCCGGCA,,Standard,CTCTCCGG,TGCCGGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037084,,9606,S4360,standard,,from:450 to:450,EGAN00002490985,Normal,Homo sapiens,0,,,PD41305k_164,4396712,,6133STDY8786693,PD41305k_164,,PD41305k_164,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,24, -27037134,EGAN00002490989,,AGAGTTAC,GATGGCTA,,Standard,AGAGTTAC,GATGGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037134,,9606,S4360,standard,,from:450 to:450,EGAN00002490989,Normal,Homo sapiens,0,,,PD41305k_168,4396716,,6133STDY8786697,PD41305k_168,,PD41305k_168,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,25, -27037061,EGAN00002490991,,CTCTTTAT,AAGCTCCG,,Standard,CTCTTTAT,AAGCTCCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037061,,9606,S4360,standard,,from:450 to:450,EGAN00002490991,Normal,Homo sapiens,0,,,PD41305k_170,4396718,,6133STDY8786699,PD41305k_170,,PD41305k_170,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,26, -27037073,EGAN00002490992,,AGAGAGCC,ATAGGCAA,,Standard,AGAGAGCC,ATAGGCAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037073,,9606,S4360,standard,,from:450 to:450,EGAN00002490992,Normal,Homo sapiens,0,,,PD41305k_171,4396719,,6133STDY8786700,PD41305k_171,,PD41305k_171,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,27, -27037085,EGAN00002490993,,CATCCACT,CCGGTGCC,,Standard,CATCCACT,CCGGTGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037085,,9606,S4360,standard,,from:450 to:450,EGAN00002490993,Normal,Homo sapiens,0,,,PD41305k_172,4396720,,6133STDY8786701,PD41305k_172,,PD41305k_172,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,28, -27037086,EGAN00002491001,,CATTCTTC,TAACCGCG,,Standard,CATTCTTC,TAACCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037086,,9606,S4360,standard,,from:450 to:450,EGAN00002491001,Normal,Homo sapiens,0,,,PD41305k_180,4396728,,6133STDY8786709,PD41305k_180,,PD41305k_180,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,29, -27037098,EGAN00002491002,,CTCGACGT,GAAGAGCC,,Standard,CTCGACGT,GAAGAGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037098,,9606,S4360,standard,,from:450 to:450,EGAN00002491002,Normal,Homo sapiens,0,,,PD41305k_181,4396729,,6133STDY8786710,PD41305k_181,,PD41305k_181,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,30, -27037110,EGAN00002491003,,AGTTGCAA,ATCCTGAG,,Standard,AGTTGCAA,ATCCTGAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037110,,9606,S4360,standard,,from:450 to:450,EGAN00002491003,Normal,Homo sapiens,0,,,PD41305k_182,4396730,,6133STDY8786711,PD41305k_182,,PD41305k_182,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,31, -27037051,EGAN00002491009,,GTAAGATG,AAAGGCTG,,Standard,GTAAGATG,AAAGGCTG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037051,,9606,S4360,standard,,from:450 to:450,EGAN00002491009,Normal,Homo sapiens,0,,,PD41305k_185,4396733,,6133STDY8786714,PD41305k_185,,PD41305k_185,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,32, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +27037064,EGAN00002490956,,CGTGACAC,TTATTGCG,,Standard,CGTGACAC,TTATTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037064,,9606,S4360,standard,,from:450 to:450,EGAN00002490956,Normal,Homo sapiens,0,,,PD41305k_99,4396647,,SQSCP,6133STDY8786628,PD41305k_99,,PD41305k_99,95b1bf0a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,1, +27037100,EGAN00002490958,,ACTTAGAG,CTCCATAA,,Standard,ACTTAGAG,CTCCATAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037100,,9606,S4360,standard,,from:450 to:450,EGAN00002490958,Normal,Homo sapiens,0,,,PD41305k_102,4396650,,SQSCP,6133STDY8786631,PD41305k_102,,PD41305k_102,95d35430-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,2, +27037112,EGAN00002490960,,TCAGGAAA,CCAAACCC,,Standard,TCAGGAAA,CCAAACCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037112,,9606,S4360,standard,,from:450 to:450,EGAN00002490960,Normal,Homo sapiens,0,,,PD41305k_103,4396651,,SQSCP,6133STDY8786632,PD41305k_103,,PD41305k_103,95daa3b6-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,3, +27037089,EGAN00002490966,,CGTCACCA,CTTGTTAA,,Standard,CGTCACCA,CTTGTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037089,,9606,S4360,standard,,from:450 to:450,EGAN00002490966,Normal,Homo sapiens,0,,,PD41305k_109,4396657,,SQSCP,6133STDY8786638,PD41305k_109,,PD41305k_109,960f6682-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,4, +27037101,EGAN00002490967,,GTGTTTCT,AAAGTGCG,,Standard,GTGTTTCT,AAAGTGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037101,,9606,S4360,standard,,from:450 to:450,EGAN00002490967,Normal,Homo sapiens,0,,,PD41305k_110,4396658,,SQSCP,6133STDY8786639,PD41305k_110,,PD41305k_110,9616e9ac-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,5, +27037113,EGAN00002490968,,GGCACTCA,AAGTACAG,,Standard,GGCACTCA,AAGTACAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037113,,9606,S4360,standard,,from:450 to:450,EGAN00002490968,Normal,Homo sapiens,0,,,PD41305k_111,4396659,,SQSCP,6133STDY8786640,PD41305k_111,,PD41305k_111,9625221a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,6, +27037125,EGAN00002490970,,GTCATCTT,GCGCGCTA,,Standard,GTCATCTT,GCGCGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037125,,9606,S4360,standard,,from:450 to:450,EGAN00002490970,Normal,Homo sapiens,0,,,PD41305k_112,4396660,,SQSCP,6133STDY8786641,PD41305k_112,,PD41305k_112,962f00aa-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,7, +27037090,EGAN00002490973,,AGAGCTTA,TATAAAGC,,Standard,AGAGCTTA,TATAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037090,,9606,S4360,standard,,from:450 to:450,EGAN00002490973,Normal,Homo sapiens,0,,,PD41305k_117,4396665,,SQSCP,6133STDY8786646,PD41305k_117,,PD41305k_117,966a452a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,8, +27037114,EGAN00002490976,,CTAAGTCC,TATCAAAG,,Standard,CTAAGTCC,TATCAAAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037114,,9606,S4360,standard,,from:450 to:450,EGAN00002490976,Normal,Homo sapiens,0,,,PD41305k_119,4396667,,SQSCP,6133STDY8786648,PD41305k_119,,PD41305k_119,969cb118-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,9, +27037091,EGAN00002490982,,GATCTTGA,GTCCCGCA,,Standard,GATCTTGA,GTCCCGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037091,,9606,S4360,standard,,from:450 to:450,EGAN00002490982,Normal,Homo sapiens,0,,,PD41305k_125,4396673,,SQSCP,6133STDY8786654,PD41305k_125,,PD41305k_125,96ce2b9e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,10, +27037056,EGAN00002491016,,GCGACTGA,CGCTTCAC,,Standard,GCGACTGA,CGCTTCAC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037056,,9606,S4360,standard,,from:450 to:450,EGAN00002491016,Normal,Homo sapiens,0,,,PD41305k_130,4396678,,SQSCP,6133STDY8786659,PD41305k_130,,PD41305k_130,96ff0ba6-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,11, +27037104,EGAN00002491020,,TCCGGATT,CACAAGGA,,Standard,TCCGGATT,CACAAGGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037104,,9606,S4360,standard,,from:450 to:450,EGAN00002491020,Normal,Homo sapiens,0,,,PD41305k_134,4396682,,SQSCP,6133STDY8786663,PD41305k_134,,PD41305k_134,97264b8a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,12, +27037129,EGAN00002491021,,AACGACTG,GAAATTAT,,Standard,AACGACTG,GAAATTAT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037129,,9606,S4360,standard,,from:450 to:450,EGAN00002491021,Normal,Homo sapiens,0,,,PD41305k_136,4396684,,SQSCP,6133STDY8786665,PD41305k_136,,PD41305k_136,973999ce-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,13, +27037105,EGAN00002491029,,CTCGTGTC,TAGAGATA,,Standard,CTCGTGTC,TAGAGATA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037105,,9606,S4360,standard,,from:450 to:450,EGAN00002491029,Normal,Homo sapiens,0,,,PD41305k_142,4396690,,SQSCP,6133STDY8786671,PD41305k_142,,PD41305k_142,9787831e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,14, +27037117,EGAN00002491028,,TGGCGGTC,AGCGTATT,,Standard,TGGCGGTC,AGCGTATT,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037117,,9606,S4360,standard,,from:450 to:450,EGAN00002491028,Normal,Homo sapiens,0,,,PD41305k_143,4396691,,SQSCP,6133STDY8786672,PD41305k_143,,PD41305k_143,9791b1a4-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,15, +27037058,EGAN00002491033,,TGATTTCC,ACTTCCGA,,Standard,TGATTTCC,ACTTCCGA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037058,,9606,S4360,standard,,from:450 to:450,EGAN00002491033,Normal,Homo sapiens,0,,,PD41305k_146,4396694,,SQSCP,6133STDY8786675,PD41305k_146,,PD41305k_146,97acd61e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,16, +27037094,EGAN00002491035,,TTTAAATG,ACGTTTAA,,Standard,TTTAAATG,ACGTTTAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037094,,9606,S4360,standard,,from:450 to:450,EGAN00002491035,Normal,Homo sapiens,0,,,PD41305k_149,4396697,,SQSCP,6133STDY8786678,PD41305k_149,,PD41305k_149,97c51120-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,17, +27037106,EGAN00002491037,,ACCTGCGG,ACGCCGCG,,Standard,ACCTGCGG,ACGCCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037106,,9606,S4360,standard,,from:450 to:450,EGAN00002491037,Normal,Homo sapiens,0,,,PD41305k_150,4396698,,SQSCP,6133STDY8786679,PD41305k_150,,PD41305k_150,97cc7bea-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,18, +27037047,EGAN00002491039,,GACCGCAG,GGTCCCTC,,Standard,GACCGCAG,GGTCCCTC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037047,,9606,S4360,standard,,from:450 to:450,EGAN00002491039,Normal,Homo sapiens,0,,,PD41305k_153,4396701,,SQSCP,6133STDY8786682,PD41305k_153,,PD41305k_153,97e24f9c-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,19, +27037071,EGAN00002491041,,GTTTCATG,CAAACAAA,,Standard,GTTTCATG,CAAACAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037071,,9606,S4360,standard,,from:450 to:450,EGAN00002491041,Normal,Homo sapiens,0,,,PD41305k_155,4396703,,SQSCP,6133STDY8786684,PD41305k_155,,PD41305k_155,97f36a66-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,20, +27037083,EGAN00002491042,,AAACATCG,ACCAAAGC,,Standard,AAACATCG,ACCAAAGC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037083,,9606,S4360,standard,,from:450 to:450,EGAN00002491042,Normal,Homo sapiens,0,,,PD41305k_156,4396704,,SQSCP,6133STDY8786685,PD41305k_156,,PD41305k_156,97fbbd6a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,21, +27037048,EGAN00002491047,,GCTGCGCT,CCGATAAA,,Standard,GCTGCGCT,CCGATAAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037048,,9606,S4360,standard,,from:450 to:450,EGAN00002491047,Normal,Homo sapiens,0,,,PD41305k_161,4396709,,SQSCP,6133STDY8786690,PD41305k_161,,PD41305k_161,98312694-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,22, +27037072,EGAN00002491048,,TGTCAGCT,CGCCGCCC,,Standard,TGTCAGCT,CGCCGCCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037072,,9606,S4360,standard,,from:450 to:450,EGAN00002491048,Normal,Homo sapiens,0,,,PD41305k_163,4396711,,SQSCP,6133STDY8786692,PD41305k_163,,PD41305k_163,98499a8a-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,23, +27037084,EGAN00002490985,,CTCTCCGG,TGCCGGCA,,Standard,CTCTCCGG,TGCCGGCA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037084,,9606,S4360,standard,,from:450 to:450,EGAN00002490985,Normal,Homo sapiens,0,,,PD41305k_164,4396712,,SQSCP,6133STDY8786693,PD41305k_164,,PD41305k_164,985b9848-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,24, +27037134,EGAN00002490989,,AGAGTTAC,GATGGCTA,,Standard,AGAGTTAC,GATGGCTA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037134,,9606,S4360,standard,,from:450 to:450,EGAN00002490989,Normal,Homo sapiens,0,,,PD41305k_168,4396716,,SQSCP,6133STDY8786697,PD41305k_168,,PD41305k_168,988e0b20-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,25, +27037061,EGAN00002490991,,CTCTTTAT,AAGCTCCG,,Standard,CTCTTTAT,AAGCTCCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037061,,9606,S4360,standard,,from:450 to:450,EGAN00002490991,Normal,Homo sapiens,0,,,PD41305k_170,4396718,,SQSCP,6133STDY8786699,PD41305k_170,,PD41305k_170,98a6a338-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,26, +27037073,EGAN00002490992,,AGAGAGCC,ATAGGCAA,,Standard,AGAGAGCC,ATAGGCAA,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037073,,9606,S4360,standard,,from:450 to:450,EGAN00002490992,Normal,Homo sapiens,0,,,PD41305k_171,4396719,,SQSCP,6133STDY8786700,PD41305k_171,,PD41305k_171,98b1c754-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,27, +27037085,EGAN00002490993,,CATCCACT,CCGGTGCC,,Standard,CATCCACT,CCGGTGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037085,,9606,S4360,standard,,from:450 to:450,EGAN00002490993,Normal,Homo sapiens,0,,,PD41305k_172,4396720,,SQSCP,6133STDY8786701,PD41305k_172,,PD41305k_172,98bc1fd8-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,28, +27037086,EGAN00002491001,,CATTCTTC,TAACCGCG,,Standard,CATTCTTC,TAACCGCG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037086,,9606,S4360,standard,,from:450 to:450,EGAN00002491001,Normal,Homo sapiens,0,,,PD41305k_180,4396728,,SQSCP,6133STDY8786709,PD41305k_180,,PD41305k_180,98fa9880-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,29, +27037098,EGAN00002491002,,CTCGACGT,GAAGAGCC,,Standard,CTCGACGT,GAAGAGCC,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037098,,9606,S4360,standard,,from:450 to:450,EGAN00002491002,Normal,Homo sapiens,0,,,PD41305k_181,4396729,,SQSCP,6133STDY8786710,PD41305k_181,,PD41305k_181,9901eebe-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,30, +27037110,EGAN00002491003,,AGTTGCAA,ATCCTGAG,,Standard,AGTTGCAA,ATCCTGAG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037110,,9606,S4360,standard,,from:450 to:450,EGAN00002491003,Normal,Homo sapiens,0,,,PD41305k_182,4396730,,SQSCP,6133STDY8786711,PD41305k_182,,PD41305k_182,990a226e-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,31, +27037051,EGAN00002491009,,GTAAGATG,AAAGGCTG,,Standard,GTAAGATG,AAAGGCTG,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk user4@sanger.ac.uk,user4@sanger.ac.uk,user1@sanger.ac.uk user2@sanger.ac.uk user3@sanger.ac.uk,user1@sanger.ac.uk,,0,0,30355804,3,27037051,,9606,S4360,standard,,from:450 to:450,EGAN00002491009,Normal,Homo sapiens,0,,,PD41305k_185,4396733,,SQSCP,6133STDY8786714,PD41305k_185,,PD41305k_185,99276e32-58b9-11ea-9228-fa163e9d6485,,,1,0,0,Sequencing of blood stem cell-derived colonies.,6133,ImmunoAgeing_Colonies_WGS,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,ImmunoAgeing_Colonies_WGS,32, diff --git a/t/data/samplesheet/novaseq_multirun.csv b/t/data/samplesheet/novaseq_multirun.csv index e4dcfb64e..74ac034fb 100644 --- a/t/data/samplesheet/novaseq_multirun.csv +++ b/t/data/samplesheet/novaseq_multirun.csv @@ -1,10 +1,10 @@ -[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, -Lane,Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,id_run,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, -1,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863688,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863689,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -3,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863690,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -4,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863691,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, -1,23356155,7617423,,,HiSeqX PCR free,GGCTTAAG,TCGTGACC,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222813,0,23356155,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7617423,3836420,,7617423,,,3426258,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, -2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222814,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,7592352,,,3547031,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, -3,23455444,7616265,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222815,0,23455444,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7616265,3835262,,7616265,,,2612688,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, -4,23454971,7615018,,,HiSeqX PCR free,GACCTGAA,TTGGTGAG,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222816,0,23454971,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7615018,3834015,,7615018,,,2361066,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,GenomeFolder,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,id_run,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,purpose,qc_state,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_lims,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,sample_uuid,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863688,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863689,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +3,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863690,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +4,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,26480,0,0,22863691,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,9, +1,23356155,7617423,,,HiSeqX PCR free,GGCTTAAG,TCGTGACC,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222813,0,23356155,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7617423,3836420,,,7617423,,,3426258,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +2,22802061,7592352,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222814,0,22802061,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7592352,3811339,,,7592352,,,3547031,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +3,23455444,7616265,,,HiSeqX PCR free,AGTTCAGG,CCAACAGA,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222815,0,23455444,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7616265,3835262,,,7616265,,,2612688,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, +4,23454971,7615018,,,HiSeqX PCR free,GACCTGAA,TTGGTGAG,aaaa@sanger.ac.uk,,aaaa@sanger.ac.uk,aaaa@sanger.ac.uk,,28780,0,0,25222816,0,23454971,,9606,T4600,standard,1,from:450 to:450,,,Homo sapiens,0,,,7615018,3834015,,,7615018,,,2361066,,888,,1,0,0,UK Whole Genome sequencing study,5392,UK Study,Homo_sapiens (GRCh38_15_plus_hs38d1) %5Bminimap2%5D,0,UK Study,4, From c78d854e1e3bf820e7ea8e3e3cd56ecffe9163bf Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Tue, 15 Oct 2024 13:06:44 +0100 Subject: [PATCH 2/6] Documented handling of multiple values. --- lib/st/api/lims.pm | 38 +++++++++++++++++++++++++++------- lib/st/api/lims/samplesheet.pm | 2 ++ 2 files changed, 33 insertions(+), 7 deletions(-) diff --git a/lib/st/api/lims.pm b/lib/st/api/lims.pm index 34b260ec1..6eb6ef4b9 100644 --- a/lib/st/api/lims.pm +++ b/lib/st/api/lims.pm @@ -44,18 +44,18 @@ st::api::lims =head1 DESCRIPTION -Generic NPG LIMS wrapper capable of retrieving data from multiple sources via -a number of source-specific drivers. Provides methods implementing business -logic that is independent of data source. +Generic NPG LIMS wrapper capable of retrieving data from multiple sources of +LIMS data via a number of source-specific drivers. Provides source-independent +set of methods for retrieving LIMS data for different types of entities. A set of valid arguments to the constructor depends on the driver type. The drivers are implemented as st::api::lims:: classes. -The default driver type is 'samplesheet'. The path to the samplesheet can be -set either in the 'path' constructor attribute or by setting the env. variable -NPG_CACHED_SAMPLESHEET_FILE. +The default driver type is C. The path to the samplesheet can be +set either in the 'path' constructor attribute or by setting the environment +variable NPG_CACHED_SAMPLESHEET_FILE. -All flavours of the ml_warehouse driver require access to the ml warehouse +All flavours of the C driver require access to the ml warehouse database. If the mlwh_schema constructor argument is not set, a connection to the database defined in a standard NPG configuration file is be used. @@ -74,6 +74,30 @@ through to the driver are be available as this object's attributes. Example: print $lims->driver_type; # ml_warehouse print $lims->iseq_flowcell(); # ERROR +=head2 Handling of Properties that Map to Multiple Values + +If a LIMS property C is described by a list of values of similar +semantics and data type, the return value of the C method is an +array of distinct values. Emails of followers, managers, etc. are examples of +this kind of properties. + +Complex entities like lanes, tag zero and compositions often represent multiple +individual libraries. Below the rules for computing the return values of +properties for complex entities are demonstrated using the C +property as an example. + +If all C values for individual libraries are the same, the return +value of the C property of the complex entity is this common +C value. + +If any of C values for individual libraries are different, then +the return value of the C property of the complex entity is C. + +For cases when it is necessary to know all C values of the +constituent libraries, this class provides C method and a number +of other similar methods, see comments for C variable +in the code below. + =head1 SUBROUTINES/METHODS =cut diff --git a/lib/st/api/lims/samplesheet.pm b/lib/st/api/lims/samplesheet.pm index f133ded21..5cc7b5b49 100644 --- a/lib/st/api/lims/samplesheet.pm +++ b/lib/st/api/lims/samplesheet.pm @@ -316,6 +316,8 @@ for my $m ( st::api::lims->driver_method_list_short(__PACKAGE__->meta->get_attri $value = undef; } if ($m =~ /^email_addresses/smx) { + # Handle potentially multiple email addressees, return an array of + # one, none or multiple values. my @temp = $value ? split $SAMPLESHEET_ARRAY_SEPARATOR, $value : (); $value = \@temp; } elsif ($m eq 'required_insert_size_range') { From c81a64ed954e075b7ac83a20084d4c56fdce5b7e Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Wed, 16 Oct 2024 16:04:54 +0100 Subject: [PATCH 3/6] Added is_lane and composition_object methods. Added is_lane and composition_object methods to st::api::lims --- lib/st/api/lims.pm | 81 ++++++++++++++++++++++++++++++++++++++++++---- t/40-st-lims.t | 47 +++++++++++++++++++++++---- 2 files changed, 115 insertions(+), 13 deletions(-) diff --git a/lib/st/api/lims.pm b/lib/st/api/lims.pm index 6eb6ef4b9..1c44c30f3 100644 --- a/lib/st/api/lims.pm +++ b/lib/st/api/lims.pm @@ -11,6 +11,8 @@ use Class::Load qw/load_class/; use npg_tracking::util::types; use npg_tracking::glossary::rpt; +use npg_tracking::glossary::composition::component::illumina; +use npg_tracking::glossary::composition::factory; use npg_tracking::glossary::composition::factory::rpt_list; use npg_tracking::data::reference::util qw/parse_reference_genome_name/; @@ -96,7 +98,7 @@ the return value of the C property of the complex entity is C values of the constituent libraries, this class provides C method and a number of other similar methods, see comments for C variable -in the code below. +in the code below. =head1 SUBROUTINES/METHODS @@ -247,7 +249,7 @@ sub BUILD { Returns a hash reference that can be used to initialise st::api::lims objects similar to this object. The driver details, if present in this object, are returned under the 'driver_type' key and, if relevant, -'mlwh_schema' key. +'mlwh_schema' key. =cut sub copy_init_args { @@ -790,7 +792,7 @@ sub _build_separate_y_chromosome_data { Method returning a list of st::api::lims objects that are associated with this object and belong to the next (one lower) level. An empty list for a non-pool lane and for a plex. -For a pooled lane contains plex-level objects. On a run level, when the position +For a pooled lane contains plex-level objects. On a run level, when the position accessor is not set, returns lane level objects. For the st::api::lims type object that was instantiated with an rpt_list attribute, returns a list of st::api::lims type objects corresponding to individual components of the composition defined by the rpt_list attribute @@ -873,6 +875,69 @@ sub is_composition { return $self->rpt_list ? 1 : 0; } +=head2 composition_object + + Returns C object for this LIMS entity. + An undefined value is returned for a run-level object. For some drivers + the value of C attribute might be undefined, in which case the return + value of this method is underined. + +=cut + +sub composition_object { + my $self = shift; + + if ($self->is_composition) { + return npg_tracking::glossary::composition::factory::rpt_list + ->new(rpt_list => $self->rpt_list)->create_composition(); + } else { + if (defined $self->id_run && defined $self->position) { + my $component = npg_tracking::glossary::composition::component::illumina + ->new( + id_run => $self->id_run, + position => $self->position, + tag_index => $self->tag_index + ); + + my $factory = npg_tracking::glossary::composition::factory->new(); + $factory->add_component($component); + return $factory->create_composition(); + } + } + + return; +} + +=head2 is_lane + + Returns true if this entity corresponds to a lane, false otherwise. + Merged lane entities are not considered to be a lane. + + To determine whether the entity is a lane regardless of the way the + C is constructed, this method inspects the object returned + by the C method. When the C method + returns an undefined value, this method's return value is false. + + st::api::lims->new(id_run => 3, position => 4)->is_lane() # true + st::api::lims->new(rpt_list => '3:4')->is_lane() # true + st::api::lims->new(rpt_list => '2:4;3:4')->is_lane() # false + st::api::lims->new(id_run => 3, position => 4, tag_index => 2)->is_lane() # false + st::api::lims->new(id_run => 3, position => 4, tag_index => 0)->is_lane() # false + +=cut + +sub is_lane { + my $self = shift; + + my $obj = $self->composition_object(); + if (defined $obj && $obj->num_components() == 1 && + !defined $obj->get_component(0)->tag_index) { + return 1; + } + + return; +} + =head2 aggregate_libraries Given a list of lane-level C objects, finds their children, @@ -908,7 +973,7 @@ This method can be used both as instance and as a class method. my $all_lims = st::api::lims->aggregate_libraries($run_lims->children()); for my $l (@{$all_lims->{'singles'}}) { - print 'No merge for ' . $l->to_string; + print 'No merge for ' . $l->to_string; } for my $l (@{$all_lims->{'merges'}}) { print 'Merged entity ' . $l->to_string; @@ -1079,7 +1144,7 @@ sub _validate_lane_numbers { } =head2 create_tag_zero_object - + Using run ID and position values of this object, creates and returns st::api::lims object for tag zero. The new object has the same driver settings as the original object. @@ -1159,7 +1224,7 @@ sub descendants { Method providing fast (index-based) access to child lims object. Returns a hash ref of st::api::lims children objects An empty hash for a non-pool lane and for a plex. -For a pooled lane contains plex-level objects. On a run level, when the position +For a pooled lane contains plex-level objects. On a run level, when the position accessor is not set, returns lane level objects. The hash keys are lane numbers (positions) or tag indices. _ia stands for index access. @@ -1361,7 +1426,9 @@ __END__ =item npg_tracking::glossary::rpt -=item npg_tracking::glossary::composition::factory::rpt +=item npg_tracking::glossary::composition::factory + +=item npg_tracking::glossary::composition::factory::rpt_list =item npg_tracking::glossary::composition::component::illumina diff --git a/t/40-st-lims.t b/t/40-st-lims.t index d02d8eb57..567d8984a 100644 --- a/t/40-st-lims.t +++ b/t/40-st-lims.t @@ -89,7 +89,7 @@ subtest 'Driver type, methods and driver build' => sub { }; subtest 'Setting return value for primary attributes' => sub { - plan tests => 21; + plan tests => 27; my @other = qw/id_flowcell_lims flowcell_barcode/; my $ss_path = 't/data/samplesheet/miseq_default.csv'; @@ -106,8 +106,17 @@ subtest 'Setting return value for primary attributes' => sub { is ($lims->position, 1, 'position is set correctly'); is ($lims->tag_index, 0, 'tag_index is set to zero'); ok ($lims->is_pool, 'tag zero is a pool'); + my $json = '{"components":[{"id_run":6551,"position":1,"tag_index":0}]}'; + is ($lims->composition_object->freeze(), $json, + 'composition object is generated'); + ok (!$lims->is_lane, 'tag zero is not a lane'); my $lane_lims = st::api::lims->new(id_run => 6551, position => 1); + $json = '{"components":[{"id_run":6551,"position":1}]}'; + is ($lane_lims->composition_object->freeze(), $json, + 'composition object is generated'); + ok ($lane_lims->is_lane, 'a lane is a lane'); + $lims = st::api::lims->new(driver => $lane_lims->driver(), id_run => 6551, position => 1, @@ -127,21 +136,36 @@ subtest 'Setting return value for primary attributes' => sub { push @a, qw/id_run position tag_index/; is ($lims->rpt_list, '6551:1', 'rpt_list is set correctly'); ok ($lims->is_composition, 'is a composition'); + is ($lims->composition_object->freeze(), $json, 'composition object is generated'); + ok ($lims->is_lane, 'and it is a lane'); for my $attr (@a) { is($lims->$attr, undef, "$attr is undefined"); } }; subtest 'Run-level object via samplesheet driver' => sub { - plan tests => 40; + plan tests => 50; my $path = 't/data/samplesheet/miseq_default.csv'; - my $ss = st::api::lims->new(id_run => 10262, path => $path, driver_type => 'samplesheet'); - isa_ok ($ss->driver, 'st::api::lims::samplesheet', 'samplesheet driver object instantiated'); + my $ss = st::api::lims->new(path => $path, driver_type => 'samplesheet'); + is ($ss->composition_object, undef, 'composition object is undefined'); + ok (!$ss->is_lane, 'not a lane'); my @lanes; lives_ok {@lanes = $ss->children} 'can get lane-level objects'; + my $json = '{"components":[{"id_run":10262,"position":1}]}'; + is ($lanes[0]->id_run, 10262, 'lane id_run is set'); + is ($lanes[0]->composition_object->freeze(), $json, 'composition object is generated'); + ok ($lanes[0]->is_lane, 'a lane is a lane'); + + $ss = st::api::lims->new(id_run => 10262, path => $path, driver_type => 'samplesheet'); + isa_ok ($ss->driver, 'st::api::lims::samplesheet', 'samplesheet driver object instantiated'); + is ($ss->composition_object, undef, 'composition object is undefined'); + ok (!$ss->is_lane, 'not a lane'); + lives_ok {@lanes = $ss->children} 'can get lane-level objects'; + is ($lanes[0]->composition_object->freeze(), $json, 'composition object is generated'); is ($lanes[0]->id_run, 10262, 'lane id_run as set'); + ok ($lanes[0]->is_lane, 'is a lane'); $ss = st::api::lims->new(id_run => 10000, path => $path, driver_type => 'samplesheet'); is ($ss->id_run, 10000, 'id_run as set'); @@ -229,7 +253,7 @@ subtest 'Lane-level and tag zero objects via samplesheet driver' => sub { }; subtest 'Plex-level objects via samplesheet driver' => sub { - plan tests => 12; + plan tests => 14; my $path = 't/data/samplesheet/miseq_default.csv'; my $l; @@ -245,6 +269,10 @@ subtest 'Plex-level objects via samplesheet driver' => sub { is ($l->position, 1, 'correct position'); is ($l->tag_index, 3, 'correct tag_index'); is ($l->is_pool, 0, 'plex is not a pool'); + is ($l->composition_object->freeze(), + '{"components":[{"id_run":10262,"position":1,"tag_index":3}]}', + 'composition object is generated'); + ok (!$l->is_lane, 'plex is not a lane'); is ($l->default_tag_sequence, 'TTAGGCAT', 'correct default tag sequence'); is ($l->tag_sequence, $l->default_tag_sequence, 'tag sequence is the same as default tag sequence'); @@ -292,7 +320,7 @@ subtest 'Samplesheet driver for a one-component composition' => sub { }; subtest 'Samplesheet driver for arbitrary compositions' => sub { - plan tests => 93; + plan tests => 95; my $path = 't/data/samplesheet/novaseq_multirun.csv'; local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = $path; @@ -374,6 +402,13 @@ subtest 'Samplesheet driver for arbitrary compositions' => sub { 'since the values for individual components differ'); is ($ss->sample_lims, undef, 'sample lims for a composition is undefined ' . 'since the values for individual components differ'); + + $rpt_list = '26480:1;26480:2'; + $ss=st::api::lims->new(rpt_list => $rpt_list); + is ($ss->composition_object->freeze(), + '{"components":[{"id_run":26480,"position":1},{"id_run":26480,"position":2}]}', + 'composition object is generated'); + ok (!$ss->is_lane, 'merged lanes entity is not a lane'); }; subtest 'Dual index' => sub { From bc7fb53bbd8e5b8746720a21889674b9387bd89a Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Wed, 23 Oct 2024 16:25:59 +0100 Subject: [PATCH 4/6] Converted composition_object method to an attribute --- lib/st/api/lims.pm | 31 +++++++++++++++++++------------ t/40-st-lims.t | 2 +- 2 files changed, 20 insertions(+), 13 deletions(-) diff --git a/lib/st/api/lims.pm b/lib/st/api/lims.pm index 1c44c30f3..3f5d550dd 100644 --- a/lib/st/api/lims.pm +++ b/lib/st/api/lims.pm @@ -877,14 +877,21 @@ sub is_composition { =head2 composition_object - Returns C object for this LIMS entity. - An undefined value is returned for a run-level object. For some drivers - the value of C attribute might be undefined, in which case the return - value of this method is underined. +A lazy-build attribute, C object for this +LIMS entity. The value is undefined for a run-level object. For some drivers +the value of C attribute might be undefined, in which case the value +of this attribute is undefined. This attribute cannot be set via the constructor. =cut -sub composition_object { +has 'composition_object' => ( + isa => 'Maybe[npg_tracking::glossary::composition]', + is => 'ro', + required => 0, + init_arg => undef, + lazy_build => 1, +); +sub _build_composition_object { my $self = shift; if ($self->is_composition) { @@ -910,13 +917,13 @@ sub composition_object { =head2 is_lane - Returns true if this entity corresponds to a lane, false otherwise. - Merged lane entities are not considered to be a lane. +Returns true (1) if this entity corresponds to a lane, false (0) otherwise. +Merged lane entities are not considered to be a lane. - To determine whether the entity is a lane regardless of the way the - C is constructed, this method inspects the object returned - by the C method. When the C method - returns an undefined value, this method's return value is false. +To determine whether the entity is a lane regardless of the way the +C is constructed, this method inspects the object returned +by the C method. When the C method +returns an undefined value, this method's return value is false. st::api::lims->new(id_run => 3, position => 4)->is_lane() # true st::api::lims->new(rpt_list => '3:4')->is_lane() # true @@ -935,7 +942,7 @@ sub is_lane { return 1; } - return; + return 0; } =head2 aggregate_libraries diff --git a/t/40-st-lims.t b/t/40-st-lims.t index 567d8984a..3b1a34a28 100644 --- a/t/40-st-lims.t +++ b/t/40-st-lims.t @@ -272,7 +272,7 @@ subtest 'Plex-level objects via samplesheet driver' => sub { is ($l->composition_object->freeze(), '{"components":[{"id_run":10262,"position":1,"tag_index":3}]}', 'composition object is generated'); - ok (!$l->is_lane, 'plex is not a lane'); + is ($l->is_lane, 0, 'plex is not a lane'); is ($l->default_tag_sequence, 'TTAGGCAT', 'correct default tag sequence'); is ($l->tag_sequence, $l->default_tag_sequence, 'tag sequence is the same as default tag sequence'); From ed66634f64694b50f3c9b13cb66624fbe18963c2 Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Thu, 24 Oct 2024 12:52:22 +0100 Subject: [PATCH 5/6] Created a list of changes for release 101.6 --- Changes | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/Changes b/Changes index 8a5015cad..50b2ac350 100644 --- a/Changes +++ b/Changes @@ -1,5 +1,19 @@ LIST OF CHANGES +release 101.6 (2024-10-24) + - Added sample_uuid and sample_lims methods to st::api::lims + - Patched st::api::lims::samplesheet to allow for scalar attributes + ending with 's'. Previously the values of attributes with names + ending with 's' were automatically converted to lists. In fact, + this was necessary only for comma-separated strings of email addresses. + The part of code that deals with email addresses was changed to + work on attributes with names starting with 'email' rather than + ending with 's'. Prior to applying this patch the value of the + new 'sample_lims' attribute was returned as a list when a samplesheet + was used as a source of LIMS data. + - Documented handling of multiple values in st::api::lims. + - Added is_lane method and composition_object attribute to st::api::lims. + release 101.5.1 (2024-10-04) - Added .github/dependabot.yml file to auto-update GitHub actions - Following a release on 07/09/2024, see https://metacpan.org/dist/App-perlbrew/changes, From c06d23001481bcb2fe92c93e26c088be1c9f6eba Mon Sep 17 00:00:00 2001 From: jmtcsngr Date: Thu, 24 Oct 2024 13:06:06 +0100 Subject: [PATCH 6/6] prep release 101.6.0 --- Changes | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Changes b/Changes index 50b2ac350..aa8095439 100644 --- a/Changes +++ b/Changes @@ -1,6 +1,6 @@ LIST OF CHANGES -release 101.6 (2024-10-24) +release 101.6.0 (2024-10-24) - Added sample_uuid and sample_lims methods to st::api::lims - Patched st::api::lims::samplesheet to allow for scalar attributes ending with 's'. Previously the values of attributes with names