Skip to content

Issues: jodyphelan/NTM-Profiler

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

18 Open 8 Closed
18 Open 8 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Increased differentiation of Mycobacterium avium subspecies?
#41 opened Oct 16, 2024 by Dx-wmc
update_db still crash on 0.5.0
#40 opened Oct 2, 2024 by yujun2017
1
update_db crash
#34 opened Feb 7, 2024 by pgcudahy
1
ntm-profiler running failed in docker container
#33 opened Dec 14, 2023 by yujun2017
5
ntm-profiler update_db failed
#31 opened Oct 9, 2023 by yujun2017
collate function not working
#27 opened Jun 21, 2023 by moks-micro
ntm profiler crashed when we run large fastq files.
#22 opened Nov 30, 2022 by yujun2017
3
OSError: [Errno 18] Invalid cross-device link
#21 opened Nov 28, 2022 by yujun2017
1
NTM env specific file
#20 opened Nov 22, 2022 by ShathaNTM
1
include SNP-based classification of M. chimaera outbreak strain enhancement New feature or request
#17 opened Aug 11, 2022 by mdiricks
@jodyphelan
3
include information on how many genomes the k-mer classification was trained on documentation Improvements or additions to documentation
#16 opened Aug 11, 2022 by mdiricks
@jodyphelan
Include a warning if closest match is further removed than expected
#15 opened Aug 11, 2022 by mdiricks
@jodyphelan
Collate function (summary report multiple samples) enhancement New feature or request
#14 opened Aug 11, 2022 by mdiricks
@jodyphelan
2
Species prediction: Update reference list
#13 opened Aug 11, 2022 by mdiricks
@jodyphelan
Can't run after update
#12 opened May 5, 2022 by pgcudahy
2
Error creating db
#8 opened Mar 29, 2022 by pgcudahy
2
Good news!!!
#4 opened Sep 20, 2021 by ritamacedo
1
Thanks getting this tool started! We are excited to give it a try!
#1 opened Aug 23, 2021 by harrismia
1
ProTip! no:milestone will show everything without a milestone.