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Species prediction: Update reference list #13

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mdiricks opened this issue Aug 11, 2022 · 0 comments
Open

Species prediction: Update reference list #13

mdiricks opened this issue Aug 11, 2022 · 0 comments
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@mdiricks
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The current reference set (https://github.com/jodyphelan/ntmdb/blob/main/db/ntm_db.msh_info.csv) does not include yet the updated NTM nomenclature (Tortoli et al. 2019) and also does not always contain a reference for each subspecies.
For some species it only contains one reference, might be better to include more sequences to improve kmer classification.

--> contact Conor

@jodyphelan jodyphelan self-assigned this Aug 19, 2022
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