TBProfiler v2.8.3

Changelog

• Fix issue #82
• Fix issue #83

TBProfiler v2.8.2

Changelog

• Fix issue where promoter mutations are not detected

TBProfiler v2.8.1

• Fix issue in #78

TBProfiler v2.8.0

• Merged in pathogen-profiler code to reduce dependency
• Core library has undergone refactoring and redundant methods removed

TBProfiler v2.7.4

• Add --reporting_af to collate function
• Change default caller to bcftools

TBProfiler v2.7.3

• Correct version to 2.7.3
• Add --no_flagstat option

TBProfiler v2.7.2

• Add --no_trim option to skip read trimming
• Fix bug in itol configs
• Fix permissions issue with bwa index creation

TBProfiler v2.7.1

• Fixed issue with fasta profiler
• Fixed issue with #60

TBProfiler v2.7

• Add fasta_profiler function

TBProfiler v2.6.1

Updates:

• Allow for databases to be stored anywhere (#52)
• Bug fix (#55)
• Add --call_whole_genome option to perform variant calling on whole genome