From 14d2117751a1f1494306aac6e9fa0cae013e51af Mon Sep 17 00:00:00 2001 From: John Harrold Date: Wed, 18 Sep 2024 06:48:53 -0700 Subject: [PATCH] Updating the fetch_mdl related functions --- R/formods.R | 44 +-- docs/articles/included_modules.html | 44 +-- docs/pkgdown.yml | 4 +- docs/reference/ASM_fetch_state.html | 4 +- docs/reference/ASM_init_state.html | 4 +- docs/reference/ASM_write_state.html | 2 +- docs/reference/DW_init_state.html | 4 +- docs/reference/FG_append_report.html | 6 +- docs/reference/FG_build.html | 10 +- docs/reference/FG_extract_page.html | 10 +- docs/reference/FG_fetch_code.html | 6 +- docs/reference/FG_fetch_current_fig.html | 10 +- docs/reference/FG_fetch_state.html | 4 +- docs/reference/FG_init_state.html | 4 +- docs/reference/FG_new_fig.html | 10 +- docs/reference/FG_set_current_fig.html | 10 +- docs/reference/FG_test_mksession.html | 6 +- docs/reference/FG_update_checksum.html | 8 +- docs/reference/FM_fetch_app_info.html | 280 +++++++++---------- docs/reference/FM_fetch_app_state.html | 6 +- docs/reference/FM_fetch_log_path.html | 2 +- docs/reference/FM_fetch_mdl.html | 20 +- docs/reference/FM_fetch_user_files_path.html | 2 +- docs/reference/FM_init_state.html | 4 +- docs/reference/FM_set_mod_state.html | 6 +- docs/reference/UD_attach_ds.html | 6 +- docs/reference/UD_init_state.html | 4 +- docs/reference/fers_builder.html | 6 +- docs/reference/new_module_template.html | 16 +- docs/search.json | 2 +- inst/templates/ZZ_Server.R | 32 ++- man/FM_fetch_mdl.Rd | 20 +- 32 files changed, 310 insertions(+), 286 deletions(-) diff --git a/R/formods.R b/R/formods.R index 012111b..910f074 100644 --- a/R/formods.R +++ b/R/formods.R @@ -2575,13 +2575,19 @@ nmr} #' \item{catalog:} Dataframe containing the a tabular catalog of the #' models found. #' \itemize{ -#' \item{label:} Text label for the model. -#' \item{object :} Name of the object that contains the compiled rxode2 model. -#' \item{MOD_TYPE:} Type of `formods` module the model came from. -#' \item{id:} Source `formods` Module ID. -#' \item{checksum:} Checksum of the module where the model came from. -#' \item{MDLchecksum:} Checksum of the model. -#' \item{code:} Code to generate the model. +#' \item{label:} Text label for the model (e.g. one-compartment model). +#' \item{MOD_TYPE:} Type of module. +#' \item{id:} Module ID. +#' \item{rx_obj:} The rxode2 object. +#' \item{rx_obj_name:} The rxode2 object name that holds the model. +#' \item{ts_obj:} List of timescale information for the system and +#' details of other timescales (\code{list(system="weeks", details = list(days=list(verb="days", conv=86400)))}) +#' \item{ts_obj_name:} The object name that holds the timescale for this model. +#' \item{fcn_def:} Text to define the model. +#' \item{MDLMETA:} Notes about the model. +#' \item{code:} Code to generate the model. +#' \item{checksum:} Module checksum. +#' \item{MDLchecksum:} Model checksum. #' } #' } #'@examples @@ -2596,12 +2602,12 @@ nmr} FM_fetch_mdl = function(state, session, ids=NULL){ - hasmdl = FALSE - isgood = TRUE - modules = list() - catalog = NULL - msgs = c() - mdl = list() + hasmdl = FALSE + isgood = TRUE + modules = list() + catalog = NULL + msgs = c() + mdl = list() # If we're null then we walk through the session variable and pull out all @@ -2634,7 +2640,7 @@ FM_fetch_mdl = function(state, session, ids=NULL){ if(fetch_res[["hasmdl"]]){ # We've found at least one model hasmdl = TRUE - mdl = c(mdl, fetch_res[["mdl"]]) + mdl = c(mdl, fetch_res[["mdl"]]) } } } @@ -2661,11 +2667,11 @@ FM_fetch_mdl = function(state, session, ids=NULL){ } # Packing everything up to be returned to the user - res = list(isgood = isgood, - hasmdl = hasmdl, - catalog = catalog, - modules = modules, - mdl = mdl) + res = list(isgood = isgood, + hasmdl = hasmdl, + catalog = catalog, + modules = modules, + mdl = mdl) res} diff --git a/docs/articles/included_modules.html b/docs/articles/included_modules.html index 1abe225..4e66da1 100644 --- a/docs/articles/included_modules.html +++ b/docs/articles/included_modules.html @@ -131,38 +131,38 @@

Avialable modules - - + +
- - - - + + + + - - - - + + + + - - - - + + + + - - - - + + + + - - - - + + + +

Module

SN

htmlOutput

Other Outputs

Module

SN

htmlOutput

Other Outputs

App State Mangement

ASM

ui_asm_save_name, ui_asm_save_button, ui_asm_load_state

ui_asm_msg, ui_asm_ace_code

App State Mangement

ASM

ui_asm_save_name, ui_asm_save_button, ui_asm_load_state

ui_asm_msg, ui_asm_ace_code

Upload Data

UD

ui_ud_load_data, ui_ud_select_sheets, ui_ud_text_load_result, ui_ud_data_preview

ui_ud_ace_code

Upload Data

UD

ui_ud_load_data, ui_ud_select_sheets, ui_ud_text_load_result, ui_ud_data_preview

ui_ud_ace_code

Data Wrangling

DW

ui_dw_views, ui_dw_key, ui_dw_new_view, ui_dw_save_view, ui_dw_del_view, ui_dw_copy_view, ui_dw_add_element_button, ui_dw_select, ui_dw_new_element_row

hot_dw_elements, hot_data_preview, ui_dw_msg, ui_dw_code

Data Wrangling

DW

ui_dw_views, ui_dw_key, ui_dw_new_view, ui_dw_save_view, ui_dw_del_view, ui_dw_copy_view, ui_dw_add_element_button, ui_dw_select, ui_dw_new_element_row

hot_dw_elements, hot_data_preview, ui_dw_msg, ui_dw_code

Figure Generation

FG

ui_fg_curr_views, ui_fg_curr_figs, ui_fg_new_fig, ui_fg_save_fig, ui_fg_del_fig, ui_fg_copy_fig, ui_fg_fig_name, ui_fg_fig_notes, ui_fg_add_element_button, ui_fg_select, ui_fg_new_element_row, ui_fg_msg, ui_fg_slider_page

hot_fg_elements, ui_fg_preview_ggplot, ui_fg_msg, ui_fg_code

Figure Generation

FG

ui_fg_curr_views, ui_fg_curr_figs, ui_fg_new_fig, ui_fg_save_fig, ui_fg_del_fig, ui_fg_copy_fig, ui_fg_fig_name, ui_fg_fig_notes, ui_fg_add_element_button, ui_fg_select, ui_fg_new_element_row, ui_fg_msg, ui_fg_slider_page

hot_fg_elements, ui_fg_preview_ggplot, ui_fg_msg, ui_fg_code
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 0545523..561d102 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,8 +1,8 @@ -pandoc: 3.1.11 +pandoc: '3.4' pkgdown: 2.0.9 pkgdown_sha: ~ articles: included_modules: included_modules.html making_modules: making_modules.html -last_built: 2024-09-02T16:00Z +last_built: 2024-09-18T13:24Z diff --git a/docs/reference/ASM_fetch_state.html b/docs/reference/ASM_fetch_state.html index dfca5d9..f445bee 100644 --- a/docs/reference/ASM_fetch_state.html +++ b/docs/reference/ASM_fetch_state.html @@ -744,10 +744,10 @@

Examples#> [1] "ASM" #> #> $FM_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/formods.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/formods.yaml" #> #> $MOD_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/ASM.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/ASM.yaml" #> #> $shiny_token #> [1] "non_shiny" diff --git a/docs/reference/ASM_init_state.html b/docs/reference/ASM_init_state.html index 80cb2f6..1c2448a 100644 --- a/docs/reference/ASM_init_state.html +++ b/docs/reference/ASM_init_state.html @@ -716,10 +716,10 @@

Examples#> [1] "ASM" #> #> $FM_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/formods.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/formods.yaml" #> #> $MOD_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/ASM.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/ASM.yaml" #> #> $shiny_token #> [1] "non_shiny" diff --git a/docs/reference/ASM_write_state.html b/docs/reference/ASM_write_state.html index 8f9ddf4..680e5e9 100644 --- a/docs/reference/ASM_write_state.html +++ b/docs/reference/ASM_write_state.html @@ -192,7 +192,7 @@

Examples file = tempfile(fileext=".zip"), mod_ids = c("UD")) #> → ASM: writing app state to file on server: -#> → ASM: /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//RtmpUNmy8U/file3905c69d645.zip +#> → ASM: /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//RtmpUdhu6j/filebe492b5d93fd.zip #> → ASM: Generating reports (code only) #> → ASM: Generating report: xlsx #> → ASM: appending report for module:DW id:DW priority:1 diff --git a/docs/reference/DW_init_state.html b/docs/reference/DW_init_state.html index 935de4d..4bc7a05 100644 --- a/docs/reference/DW_init_state.html +++ b/docs/reference/DW_init_state.html @@ -1066,10 +1066,10 @@

Examples#> [1] "UD" #> #> $FM_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/formods.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/formods.yaml" #> #> $MOD_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/DW.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/DW.yaml" #> #> $shiny_token #> [1] "non_shiny" diff --git a/docs/reference/FG_append_report.html b/docs/reference/FG_append_report.html index a30e14f..3060651 100644 --- a/docs/reference/FG_append_report.html +++ b/docs/reference/FG_append_report.html @@ -178,9 +178,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:ac9d2761d8dab4bee8e855e08ca7b1e0 -#> → FG: module checksum updated:4282e6153a505e4d8925a6c27cbba7d8 -#> → FG: module checksum updated:f7ae470edb2b3395ffb674b6a2269512 +#> → FG: module checksum updated:0e61071fe9bd5358189dec135d0d223f +#> → FG: module checksum updated:abc2b6deaf776ebefc5bd3b06bef1bbd +#> → FG: module checksum updated:790104efb606489756dcb1abfa8b170b state = sess_res$state # This will read in the default PowerPoint report template rpt = diff --git a/docs/reference/FG_build.html b/docs/reference/FG_build.html index 4a79660..f3d74f3 100644 --- a/docs/reference/FG_build.html +++ b/docs/reference/FG_build.html @@ -190,9 +190,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 session = sess_res$session input = sess_res$input @@ -219,11 +219,11 @@

Examples# If you made any changes to the actual figure, this will # force a rebuild of the current figure: state = FG_build( state=state, del_row = NULL, cmd = NULL) -#> → FG: module checksum updated:1fe9d7391c5b4f479172fd33c205ee8e +#> → FG: module checksum updated:e1cc4b013a91763dd94992bf70efde57 # To create a new empty figure you can do this: state = FG_new_fig(state) -#> → FG: module checksum updated:131625d07b364ef75c58016d6b15e596 +#> → FG: module checksum updated:6205f8a73080c3028e39c3a2a15ba2ae # } diff --git a/docs/reference/FG_extract_page.html b/docs/reference/FG_extract_page.html index 578d419..a8199fe 100644 --- a/docs/reference/FG_extract_page.html +++ b/docs/reference/FG_extract_page.html @@ -163,9 +163,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 session = sess_res$session input = sess_res$input @@ -192,11 +192,11 @@

Examples# If you made any changes to the actual figure, this will # force a rebuild of the current figure: state = FG_build( state=state, del_row = NULL, cmd = NULL) -#> → FG: module checksum updated:1fe9d7391c5b4f479172fd33c205ee8e +#> → FG: module checksum updated:e1cc4b013a91763dd94992bf70efde57 # To create a new empty figure you can do this: state = FG_new_fig(state) -#> → FG: module checksum updated:131625d07b364ef75c58016d6b15e596 +#> → FG: module checksum updated:6205f8a73080c3028e39c3a2a15ba2ae # } diff --git a/docs/reference/FG_fetch_code.html b/docs/reference/FG_fetch_code.html index 6dc4790..de68590 100644 --- a/docs/reference/FG_fetch_code.html +++ b/docs/reference/FG_fetch_code.html @@ -157,9 +157,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 state = sess_res$state code = FG_fetch_code(state) cat(paste(code, collapse="\n")) diff --git a/docs/reference/FG_fetch_current_fig.html b/docs/reference/FG_fetch_current_fig.html index fece03e..3c8c6c2 100644 --- a/docs/reference/FG_fetch_current_fig.html +++ b/docs/reference/FG_fetch_current_fig.html @@ -161,9 +161,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 session = sess_res$session input = sess_res$input @@ -190,11 +190,11 @@

Examples# If you made any changes to the actual figure, this will # force a rebuild of the current figure: state = FG_build( state=state, del_row = NULL, cmd = NULL) -#> → FG: module checksum updated:1fe9d7391c5b4f479172fd33c205ee8e +#> → FG: module checksum updated:e1cc4b013a91763dd94992bf70efde57 # To create a new empty figure you can do this: state = FG_new_fig(state) -#> → FG: module checksum updated:131625d07b364ef75c58016d6b15e596 +#> → FG: module checksum updated:6205f8a73080c3028e39c3a2a15ba2ae # } diff --git a/docs/reference/FG_fetch_state.html b/docs/reference/FG_fetch_state.html index d18f6ed..9126bbf 100644 --- a/docs/reference/FG_fetch_state.html +++ b/docs/reference/FG_fetch_state.html @@ -1568,10 +1568,10 @@

Examples#> [1] "UD" "DW" #> #> $FM_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/formods.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/formods.yaml" #> #> $MOD_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/FG.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/FG.yaml" #> #> $shiny_token #> [1] "non_shiny" diff --git a/docs/reference/FG_init_state.html b/docs/reference/FG_init_state.html index 48cadf3..bde2967 100644 --- a/docs/reference/FG_init_state.html +++ b/docs/reference/FG_init_state.html @@ -1317,10 +1317,10 @@

Examples#> [1] "UD" "DW" #> #> $FM_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/formods.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/formods.yaml" #> #> $MOD_yaml_file -#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/FG.yaml" +#> [1] "/private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/FG.yaml" #> #> $shiny_token #> [1] "non_shiny" diff --git a/docs/reference/FG_new_fig.html b/docs/reference/FG_new_fig.html index ac28cdd..50cc903 100644 --- a/docs/reference/FG_new_fig.html +++ b/docs/reference/FG_new_fig.html @@ -160,9 +160,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 session = sess_res$session input = sess_res$input @@ -189,11 +189,11 @@

Examples# If you made any changes to the actual figure, this will # force a rebuild of the current figure: state = FG_build( state=state, del_row = NULL, cmd = NULL) -#> → FG: module checksum updated:1fe9d7391c5b4f479172fd33c205ee8e +#> → FG: module checksum updated:e1cc4b013a91763dd94992bf70efde57 # To create a new empty figure you can do this: state = FG_new_fig(state) -#> → FG: module checksum updated:131625d07b364ef75c58016d6b15e596 +#> → FG: module checksum updated:6205f8a73080c3028e39c3a2a15ba2ae # } diff --git a/docs/reference/FG_set_current_fig.html b/docs/reference/FG_set_current_fig.html index af4cf3c..880a799 100644 --- a/docs/reference/FG_set_current_fig.html +++ b/docs/reference/FG_set_current_fig.html @@ -166,9 +166,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 session = sess_res$session input = sess_res$input @@ -195,11 +195,11 @@

Examples# If you made any changes to the actual figure, this will # force a rebuild of the current figure: state = FG_build( state=state, del_row = NULL, cmd = NULL) -#> → FG: module checksum updated:1fe9d7391c5b4f479172fd33c205ee8e +#> → FG: module checksum updated:e1cc4b013a91763dd94992bf70efde57 # To create a new empty figure you can do this: state = FG_new_fig(state) -#> → FG: module checksum updated:131625d07b364ef75c58016d6b15e596 +#> → FG: module checksum updated:6205f8a73080c3028e39c3a2a15ba2ae # } diff --git a/docs/reference/FG_test_mksession.html b/docs/reference/FG_test_mksession.html index c7ad2fa..477446e 100644 --- a/docs/reference/FG_test_mksession.html +++ b/docs/reference/FG_test_mksession.html @@ -182,9 +182,9 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 # } diff --git a/docs/reference/FG_update_checksum.html b/docs/reference/FG_update_checksum.html index df19f75..f71fe7c 100644 --- a/docs/reference/FG_update_checksum.html +++ b/docs/reference/FG_update_checksum.html @@ -163,12 +163,12 @@

Examples#> → FG: dest: file.path("config","report.yaml") #> → FG: State initialized #> → FG: module checksum updated:fe20f9f6c123dd93a84d1130013d4682 -#> → FG: module checksum updated:5eb06791d95d83a8abea6ce8ba3a2b63 -#> → FG: module checksum updated:e7481859a0031c2800cae82851ccb6b9 -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:f5b67894f190b99579620342a023ecc8 +#> → FG: module checksum updated:52136bc72fe6d3236c8c893c1bf2455a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 state = sess_res$state state = FG_update_checksum(state) -#> → FG: module checksum updated:72d310b974b782a05aebdfeab4facb9a +#> → FG: module checksum updated:b441193a19d1cfbe07d41376159d1748 # } diff --git a/docs/reference/FM_fetch_app_info.html b/docs/reference/FM_fetch_app_info.html index f957bab..78a26c3 100644 --- a/docs/reference/FM_fetch_app_info.html +++ b/docs/reference/FM_fetch_app_info.html @@ -111,146 +111,146 @@

Examplessession = sess_res$session app_info = FM_fetch_app_info(session) app_info$msgs -#> [1] "Modules" -#> [2] "ID: UD" -#> [3] "type: UD" -#> [4] "FM_yaml_file: /private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/formods.yaml" -#> [5] "MOD_yaml_file: /private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca/formods/templates/UD.yaml" -#> [6] "User files: /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//RtmpUNmy8U/non_shiny/FM" -#> [7] "Log file: /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//RtmpUNmy8U/non_shiny/FM/formods_log.txt" -#> [8] "Package dependencies: janitor, readr, readxl" -#> [9] " package * version date (UTC) lib source" -#> [10] " abind 1.4-5 2016-07-21 [2] CRAN (R 4.4.0)" -#> [11] " askpass 1.2.0 2023-09-03 [2] CRAN (R 4.4.0)" -#> [12] " backports 1.5.0 2024-05-23 [2] CRAN (R 4.4.0)" -#> [13] " brio 1.1.5 2024-04-24 [2] CRAN (R 4.4.0)" -#> [14] " broom 1.0.6 2024-05-17 [2] CRAN (R 4.4.0)" -#> [15] " bslib 0.8.0 2024-07-29 [2] CRAN (R 4.4.0)" -#> [16] " cachem 1.1.0 2024-05-16 [2] CRAN (R 4.4.0)" -#> [17] " car 3.1-2 2023-03-30 [2] CRAN (R 4.4.0)" -#> [18] " carData 3.0-5 2022-01-06 [2] CRAN (R 4.4.0)" -#> [19] " cellranger 1.1.0 2016-07-27 [2] CRAN (R 4.4.0)" -#> [20] " cli 3.6.3 2024-06-21 [2] CRAN (R 4.4.0)" -#> [21] " clipr 0.8.0 2022-02-22 [2] CRAN (R 4.4.0)" -#> [22] " colorspace 2.1-1 2024-07-26 [2] CRAN (R 4.4.0)" -#> [23] " covr 3.6.4 2023-11-09 [2] CRAN (R 4.4.0)" -#> [24] " crayon 1.5.3 2024-06-20 [2] CRAN (R 4.4.0)" -#> [25] " crul 1.4.2 2024-04-09 [2] CRAN (R 4.4.0)" -#> [26] " curl 5.2.1 2024-03-01 [2] CRAN (R 4.4.0)" -#> [27] " data.table 1.15.4 2024-03-30 [2] CRAN (R 4.4.0)" -#> [28] " desc 1.4.3 2023-12-10 [2] CRAN (R 4.4.0)" -#> [29] " devtools 2.4.5 2022-10-11 [2] CRAN (R 4.4.0)" -#> [30] " digest 0.6.36 2024-06-23 [2] CRAN (R 4.4.0)" -#> [31] " downlit 0.4.4 2024-06-10 [2] CRAN (R 4.4.0)" -#> [32] " dplyr 1.1.4 2023-11-17 [2] CRAN (R 4.4.0)" -#> [33] " DT 0.33 2024-04-04 [2] CRAN (R 4.4.0)" -#> [34] " ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.4.0)" -#> [35] " evaluate 0.24.0 2024-06-10 [2] CRAN (R 4.4.0)" -#> [36] " fansi 1.0.6 2023-12-08 [2] CRAN (R 4.4.0)" -#> [37] " farver 2.1.2 2024-05-13 [2] CRAN (R 4.4.0)" -#> [38] " fastmap 1.2.0 2024-05-15 [2] CRAN (R 4.4.0)" -#> [39] " flextable 0.9.6 2024-05-05 [2] CRAN (R 4.4.0)" -#> [40] " fontBitstreamVera 0.1.1 2017-02-01 [2] CRAN (R 4.4.0)" -#> [41] " fontLiberation 0.1.0 2016-10-15 [2] CRAN (R 4.4.0)" -#> [42] " fontquiver 0.2.1 2017-02-01 [2] CRAN (R 4.4.0)" -#> [43] " formods * 0.1.7 2024-09-02 [1] local" -#> [44] " fs 1.6.4 2024-04-25 [2] CRAN (R 4.4.0)" -#> [45] " gdtools 0.3.7 2024-03-05 [2] CRAN (R 4.4.0)" -#> [46] " generics 0.1.3 2022-07-05 [2] CRAN (R 4.4.0)" -#> [47] " gfonts 0.2.0 2023-01-08 [2] CRAN (R 4.4.0)" -#> [48] " ggforce 0.4.2 2024-02-19 [2] CRAN (R 4.4.0)" -#> [49] " ggplot2 3.5.1 2024-04-23 [2] CRAN (R 4.4.0)" -#> [50] " ggpubr 0.6.0 2023-02-10 [2] CRAN (R 4.4.0)" -#> [51] " ggsignif 0.6.4 2022-10-13 [2] CRAN (R 4.4.0)" -#> [52] " glue 1.7.0 2024-01-09 [2] CRAN (R 4.4.0)" -#> [53] " gtable 0.3.5 2024-04-22 [2] CRAN (R 4.4.0)" -#> [54] " gtools 3.9.5 2023-11-20 [2] CRAN (R 4.4.0)" -#> [55] " here 1.0.1 2020-12-13 [2] CRAN (R 4.4.0)" -#> [56] " hms 1.1.3 2023-03-21 [2] CRAN (R 4.4.0)" -#> [57] " htmltools 0.5.8.1 2024-04-04 [2] CRAN (R 4.4.0)" -#> [58] " htmlwidgets 1.6.4 2023-12-06 [2] CRAN (R 4.4.0)" -#> [59] " httpcode 0.3.0 2020-04-10 [2] CRAN (R 4.4.0)" -#> [60] " httpuv 1.6.15 2024-03-26 [2] CRAN (R 4.4.0)" -#> [61] " httr 1.4.7 2023-08-15 [2] CRAN (R 4.4.0)" -#> [62] " janitor 2.2.0 2023-02-02 [2] CRAN (R 4.4.0)" -#> [63] " jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.4.0)" -#> [64] " jsonlite 1.8.8 2023-12-04 [2] CRAN (R 4.4.0)" -#> [65] " knitr 1.48 2024-07-07 [2] CRAN (R 4.4.0)" -#> [66] " labeling 0.4.3 2023-08-29 [2] CRAN (R 4.4.0)" -#> [67] " later 1.3.2 2023-12-06 [2] CRAN (R 4.4.0)" -#> [68] " lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.4.0)" -#> [69] " lifecycle 1.0.4 2023-11-07 [2] CRAN (R 4.4.0)" -#> [70] " lubridate 1.9.3 2023-09-27 [2] CRAN (R 4.4.0)" -#> [71] " magrittr 2.0.3 2022-03-30 [2] CRAN (R 4.4.0)" -#> [72] " MASS 7.3-60.2 2024-04-24 [2] local" -#> [73] " memoise 2.0.1 2021-11-26 [2] CRAN (R 4.4.0)" -#> [74] " mime 0.12 2021-09-28 [2] CRAN (R 4.4.0)" -#> [75] " miniUI 0.1.1.1 2018-05-18 [2] CRAN (R 4.4.0)" -#> [76] " munsell 0.5.1 2024-04-01 [2] CRAN (R 4.4.0)" -#> [77] " officer 0.6.6 2024-05-05 [2] CRAN (R 4.4.0)" -#> [78] " onbrand 1.0.5 2024-02-05 [2] CRAN (R 4.4.0)" -#> [79] " openssl 2.2.0 2024-05-16 [2] CRAN (R 4.4.0)" -#> [80] " pillar 1.9.0 2023-03-22 [2] CRAN (R 4.4.0)" -#> [81] " pkgbuild 1.4.4 2024-03-17 [2] CRAN (R 4.4.0)" -#> [82] " pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.4.0)" -#> [83] " pkgdown 2.0.9 2024-04-18 [2] CRAN (R 4.4.0)" -#> [84] " pkgload 1.4.0 2024-06-28 [2] CRAN (R 4.4.0)" -#> [85] " plotly 4.10.4 2024-01-13 [2] CRAN (R 4.4.0)" -#> [86] " polyclip 1.10-7 2024-07-23 [2] CRAN (R 4.4.0)" -#> [87] " profvis 0.3.8 2023-05-02 [2] CRAN (R 4.4.0)" -#> [88] " promises 1.3.0 2024-04-05 [2] CRAN (R 4.4.0)" -#> [89] " prompter 1.2.0 2024-04-08 [2] CRAN (R 4.4.0)" -#> [90] " purrr 1.0.2 2023-08-10 [2] CRAN (R 4.4.0)" -#> [91] " R6 2.5.1 2021-08-19 [2] CRAN (R 4.4.0)" -#> [92] " ragg 1.3.2 2024-05-15 [2] CRAN (R 4.4.0)" -#> [93] " Rcpp 1.0.13 2024-07-17 [2] CRAN (R 4.4.0)" -#> [94] " readr 2.1.5 2024-01-10 [2] CRAN (R 4.4.0)" -#> [95] " readxl 1.4.3 2023-07-06 [2] CRAN (R 4.4.0)" -#> [96] " remotes 2.5.0 2024-03-17 [2] CRAN (R 4.4.0)" -#> [97] " rex 1.2.1 2021-11-26 [2] CRAN (R 4.4.0)" -#> [98] " rhandsontable 0.3.8 2021-05-27 [2] CRAN (R 4.4.0)" -#> [99] " rlang 1.1.4 2024-06-04 [2] CRAN (R 4.4.0)" -#> [100] " rmarkdown 2.27 2024-05-17 [2] CRAN (R 4.4.0)" -#> [101] " rprojroot 2.0.4 2023-11-05 [2] CRAN (R 4.4.0)" -#> [102] " rstatix 0.7.2 2023-02-01 [2] CRAN (R 4.4.0)" -#> [103] " rstudioapi 0.16.0 2024-03-24 [2] CRAN (R 4.4.0)" -#> [104] " sass 0.4.9 2024-03-15 [2] CRAN (R 4.4.0)" -#> [105] " scales 1.3.0 2023-11-28 [2] CRAN (R 4.4.0)" -#> [106] " sessioninfo 1.2.2 2021-12-06 [2] CRAN (R 4.4.0)" -#> [107] " shiny 1.8.1.1 2024-04-02 [2] CRAN (R 4.4.0)" -#> [108] " shinyAce 0.4.2 2022-05-06 [2] CRAN (R 4.4.0)" -#> [109] " shinybusy 0.3.3 2024-03-09 [2] CRAN (R 4.4.0)" -#> [110] " shinydashboard 0.7.2 2021-09-30 [2] CRAN (R 4.4.0)" -#> [111] " shinyWidgets 0.8.6 2024-04-24 [2] CRAN (R 4.4.0)" -#> [112] " snakecase 0.11.1 2023-08-27 [2] CRAN (R 4.4.0)" -#> [113] " stringi 1.8.4 2024-05-06 [2] CRAN (R 4.4.0)" -#> [114] " stringr 1.5.1 2023-11-14 [2] CRAN (R 4.4.0)" -#> [115] " systemfonts 1.1.0 2024-05-15 [2] CRAN (R 4.4.0)" -#> [116] " testthat 3.2.1.1 2024-04-14 [2] CRAN (R 4.4.0)" -#> [117] " textshaping 0.4.0 2024-05-24 [2] CRAN (R 4.4.0)" -#> [118] " tibble 3.2.1 2023-03-20 [2] CRAN (R 4.4.0)" -#> [119] " tidyr 1.3.1 2024-01-24 [2] CRAN (R 4.4.0)" -#> [120] " tidyselect 1.2.1 2024-03-11 [2] CRAN (R 4.4.0)" -#> [121] " timechange 0.3.0 2024-01-18 [2] CRAN (R 4.4.0)" -#> [122] " tweenr 2.0.3 2024-02-26 [2] CRAN (R 4.4.0)" -#> [123] " tzdb 0.4.0 2023-05-12 [2] CRAN (R 4.4.0)" -#> [124] " urlchecker 1.0.1 2021-11-30 [2] CRAN (R 4.4.0)" -#> [125] " usethis 2.2.3 2024-02-19 [2] CRAN (R 4.4.0)" -#> [126] " utf8 1.2.4 2023-10-22 [2] CRAN (R 4.4.0)" -#> [127] " uuid 1.2-0 2024-01-14 [2] CRAN (R 4.4.0)" -#> [128] " vctrs 0.6.5 2023-12-01 [2] CRAN (R 4.4.0)" -#> [129] " viridisLite 0.4.2 2023-05-02 [2] CRAN (R 4.4.0)" -#> [130] " whisker 0.4.1 2022-12-05 [2] CRAN (R 4.4.0)" -#> [131] " withr 3.0.1 2024-07-31 [2] CRAN (R 4.4.0)" -#> [132] " writexl 1.5.0 2024-02-09 [2] CRAN (R 4.4.0)" -#> [133] " xfun 0.46 2024-07-18 [2] CRAN (R 4.4.0)" -#> [134] " xml2 1.3.6 2023-12-04 [2] CRAN (R 4.4.0)" -#> [135] " xtable 1.8-4 2019-04-21 [2] CRAN (R 4.4.0)" -#> [136] " yaml 2.3.10 2024-07-26 [2] CRAN (R 4.4.0)" -#> [137] " zip 2.3.1 2024-01-27 [2] CRAN (R 4.4.0)" -#> [138] "" -#> [139] " [1] /private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmprxYYpe/temp_libpath168691f91a1ca" -#> [140] " [2] /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library" +#> [1] "Modules" +#> [2] "ID: UD" +#> [3] "type: UD" +#> [4] "FM_yaml_file: /private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/formods.yaml" +#> [5] "MOD_yaml_file: /private/var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T/RtmpNZoppn/temp_libpathad101dd5172f/formods/templates/UD.yaml" +#> [6] "User files: /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//RtmpUdhu6j/non_shiny/FM" +#> [7] "Log file: /var/folders/pq/7srbf_fx3rd3k706hgxkg61r0000gp/T//RtmpUdhu6j/non_shiny/FM/formods_log.txt" +#> [8] "Package dependencies: janitor, readr, readxl" +#> [9] " package * version date (UTC) lib source" +#> [10] " abind 1.4-5 2016-07-21 [2] CRAN (R 4.4.0)" +#> [11] " askpass 1.2.0 2023-09-03 [2] CRAN (R 4.4.0)" +#> [12] " backports 1.5.0 2024-05-23 [2] CRAN (R 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