cicd.yaml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: Python application

on:
  push:
  pull_request:
    branches: [ "main", "shiny_server"]
  schedule:
    - cron: '0 2 * * 3'

permissions:
  contents: read


jobs:
  format:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: psf/black@stable 
  lint:
    name: Lint with ruff
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.11"
      - name: Install ruff
        run: | 
          pip install ruff
      - name: Lint with ruff  
        run: |
          # stop the build if there are Python syntax errors or undefined names
          ruff check .
  test:
    name: Test
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.8"]
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: 'pip' # caching pip dependencies
          # cache-dependency-path: '**/pyproject.toml'
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install pytest
          pip install -e . --find-links https://data.pyg.org/whl/torch-2.4.1+cpu.html
      - name: Run tests
        run: python -m pytest tests
  
  build_source_dist:
    name: Build source distribution
    if: startsWith(github.ref, 'refs/heads/main') || startsWith(github.ref, 'refs/tags')
    runs-on: ubuntu-latest
    steps:
        - uses: actions/checkout@v4

        - uses: actions/setup-python@v5
          with:
            python-version: "3.10"

        - name: Install build
          run: python -m pip install build

        - name: Run build
          run: python -m build --sdist

        - uses: actions/upload-artifact@v4
          with:
            path: ./dist/*.tar.gz
  # Needed in case of building packages with external binaries (e.g. Cython, RUst-extensions, etc.)
  # build_wheels:
  #   name: Build wheels on ${{ matrix.os }}
  #   if: startsWith(github.ref, 'refs/heads/main') || startsWith(github.ref, 'refs/tags')
  #   runs-on: ${{ matrix.os }}
  #   strategy:
  #       matrix:
  #         os: [ubuntu-20.04, windows-2019, macOS-10.15]

  #   steps:
  #       - uses: actions/checkout@v4

  #       - uses: actions/setup-python@v5
  #         with:
  #           python-version: "3.10"

  #       - name: Install cibuildwheel
  #         run: python -m pip install cibuildwheel==2.3.1

  #       - name: Build wheels
  #         run: python -m cibuildwheel --output-dir wheels

  #       - uses: actions/upload-artifact@v4
  #         with:
  #           path: ./wheels/*.whl

  publish:
      name: Publish package
      if: startsWith(github.ref, 'refs/tags')
      needs:
          - format
          - lint
          - test
          - build_source_dist
          # - build_wheels
      runs-on: ubuntu-latest

      steps:
          - uses: actions/download-artifact@v4
            with:
              name: artifact
              path: ./dist

          - uses: pypa/gh-action-pypi-publish@release/v1
            with:
              user: __token__
              password: ${{ secrets.PYPI_API_TOKEN }}