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Staging wp5#19

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russHyde merged 24 commits intomasterjumpingrivers/tfpscanner:masterfrom staging-wp5jumpingrivers/tfpscanner:staging-wp5Copy head branch name to clipboardJul 10, 2023

+895-101

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Commits on Dec 6, 2022

• env: bump roxygen version

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• refac: separate creation from saving of sina-cluster plot

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• feat: save sina-plot as ggplot2 in .rds file

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• chore: bump version

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Commits on Dec 15, 2022

• feat: treeview() user can specify sina-plot output format (rds or html)

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• feat: allow saving sina-cluster plots as both html and rds

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Commits on Dec 19, 2022

• Merge pull request #17 from jumpingrivers/sinaplot-rds

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• refac: function to get mutation-lists from a data.frame defining the clusters

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• feat: create cluster-mutation lookup tables

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Commits on Jan 17, 2023

• Merge pull request #21 from jumpingrivers/mut-lookups

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• refac: rename treeview() param for specifying sina-plot output format

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• feat: save_trees() can output interactive trees to .rds or .html

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• feat: treeview() outputs either .rds or .html (or both) for interactive plots

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• feat: save_trees() can export html, rds or both for interactive plots

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• refac: simplify tests for filepaths created by save_trees()

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Commits on Jan 18, 2023

• chore: bump version

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• env: use htmlwidgets >= 1.6.0 to fix a bug with pandoc paths

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Commits on Jan 20, 2023

• Merge pull request #18 from jumpingrivers/optional-html-treeview

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Commits on Jul 5, 2023

• ci: remove document() pre-commit hook

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• feat: create files required by tfpbrowser using create_browser_data()

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• fix: ensure correct cluster IDs are added to node-lookup tables

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• add notes on how to set up tfpbrowser files using tfpscanner

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Commits on Jul 6, 2023

• Merge pull request #24 from jumpingrivers/prep-browser-data

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• bump version

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