From ae82bf3edb36b9c81366fc38a1b86a0d788eb034 Mon Sep 17 00:00:00 2001 From: Liang Ding Date: Wed, 13 Feb 2019 22:33:54 -0600 Subject: [PATCH] fix 3 issues --- README.md | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index e51fae1..cc9f288 100644 --- a/README.md +++ b/README.md @@ -29,14 +29,10 @@ $ conda activate py36 $ conda install --file requirements.txt ``` -For information on configuring the conda environment to setup the necessary environmental variables -(`PYTHON_PATH` and `SJARACNE_PATH`), refer to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables). - - ### Using pip First install [Python 3.6.1](https://www.python.org/downloads/) and then use the following command to install package requirements. -```$ pip install -f dependencies.txt``` +```$ pip install -f requirements.txt``` ### Install from source @@ -97,7 +93,7 @@ The command will run scripts 02-04 automatically and generate the final results. ```$ sjaracne SIG ./test_data/inputs/BRCA100.exp ./test_data/inputs/sig.txt ./test_data/outputs/``` ### Example of Running Transcription Factor Network on a Single Machine (Linux/OSX) -```$sjaracne TF ./test_data/inputs/BRCA100.exp ./test_data/inputs/tf.txt ./test_data/outputs/``` +```$ sjaracne TF ./test_data/inputs/BRCA100.exp ./test_data/inputs/tf.txt ./test_data/outputs/``` ### Expected Output Expected output for the example data with 100 bootstraps is available under