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Malayalam belongs to the family of Brahmic writing systems that is alphasyllabary in nature. In this writing system consonant–vowel sequences are written as a unit; each unit is based on a consonant letter, and vowel notation is secondary.
There are independent notations for vowels (eg: അ /a/, ഈ /iː/)
Short vowels (/a/ )
Long vowels (/iː/)
Diphthongs (/ai̯/)
Independent consonant without a vowel sign following them has the inherent vowel /a/ associated with them. (eg: ക /ka/ )
There are vowel signs (diacritics) following a consonant (eg: കി /ki/, കെ /ke/) to indicate the vowel sounds. These signs (eg: ി, െ) do not have independent existence without a consonant preceding them. A vowel sign automatically removes the inherent vowel associated with the consonant.
The special diacritic called 'chandrakkala' or 'virama' (്) following a consonant has the function of removing the inherent vowel.
Consonant clusters or conjuncts are formed by joining the consonants with virama in between. (eg: ക/ka/+്+ഷ/ʂa/ -> ക്ഷ /kʂa/. Note the removal of /a/ sound in /ka/).
But virama at word ends, do not make abrupt consonantal ending to the word, instead introduces the medial vowel 'schwa'. (eg: വാക്ക് /ʋaːkkə/) and is called 'Samvruthokaram'. Native Malayalam speakers introduce this word end 'schwa', even when pronouncing English word like 'Bus' as /basə/.
There are special consonant characters in Malayalam, that have no inherent vowel associated with them. They are called 'Chillus'. ( eg: ൽ /l/, ൻ /n/, ർ /r/)
There are other diacritics like Anuswara, (ം) and Visarga (ഃ) with sounds of /m/ and /h/ respectively.