diff --git a/README.md b/README.md index 8f3e550..d40352f 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ -tableone (developmental repo) -============================= +tableone +======== [![Travis-CI Build Status](https://travis-ci.org/kaz-yos/tableone.svg?branch=develop)](https://travis-ci.org/kaz-yos/tableone) @@ -21,14 +21,14 @@ Java-based GUI package by Ian Fellows. This package does not require GUI or Java, and intended for command-line users. tableone in action ------------------- +================== ![screencast](tableone.gif "screencast") The code being executed can be found in the introduction vignette. tableone code example ---------------------- +===================== In this table, continuous and categorical variables can be placed in any order. The p-valeus are from exact tests for pre-specified variables. @@ -89,7 +89,7 @@ options remain the same. ## 4 55 (34.8) 54 (35.1) Installation ------------- +============ This version of tableone package for R is developmetal, and may not be available from the CRAN. You can install it using one of the following @@ -112,7 +112,7 @@ link for information. http://www.rstudio.com/projects/devtools/ Contributors ------------- +============ I would like to thank all the contributors! @@ -126,7 +126,7 @@ I would like to thank all the contributors! - [gbouzill](https://github.com/gbouzill) Similar or complementary projects ---------------------------------- +================================= There are multiple similar or complementary projects of interest. diff --git a/docs/articles/smd.html b/docs/articles/smd.html index 7d532dc..190424e 100644 --- a/docs/articles/smd.html +++ b/docs/articles/smd.html @@ -276,81 +276,81 @@ 

                        Stratified by swang1
                          No RHC          RHC             SMD   
   n                        1563            1563                
-  age (mean (SD))         60.53 (17.34)   60.58 (15.72)   0.003
-  sex = Male (%)            896 (57.3)      892 (57.1)    0.005
-  race (%)                                                0.005
-     black                  244 (15.6)      247 (15.8)         
+  age (mean (SD))         60.88 (17.24)   60.58 (15.72)   0.019
+  sex = Male (%)            884 (56.6)      892 (57.1)    0.010
+  race (%)                                                0.009
+     black                  242 (15.5)      247 (15.8)         
      other                   99 ( 6.3)       99 ( 6.3)         
-     white                 1220 (78.1)     1217 (77.9)         
-  edu (mean (SD))         11.84 (3.12)    11.78 (3.16)    0.020
-  income (%)                                              0.037
-     > $50k                 138 ( 8.8)      124 ( 7.9)         
+     white                 1222 (78.2)     1217 (77.9)         
+  edu (mean (SD))         11.81 (3.14)    11.78 (3.16)    0.009
+  income (%)                                              0.039
+     > $50k                 136 ( 8.7)      124 ( 7.9)         
      $11-$25k               323 (20.7)      337 (21.6)         
-     $25-$50k               263 (16.8)      262 (16.8)         
-     Under $11k             839 (53.7)      840 (53.7)         
-  ninsclas (%)                                            0.043
-     Medicaid               168 (10.7)      152 ( 9.7)         
-     Medicare               356 (22.8)      371 (23.7)         
-     Medicare & Medicaid     89 ( 5.7)       94 ( 6.0)         
-     No insurance            86 ( 5.5)       89 ( 5.7)         
-     Private                509 (32.6)      498 (31.9)         
-     Private & Medicare     355 (22.7)      359 (23.0)         
-  cat1 (%)                                                0.087
-     ARF                    703 (45.0)      679 (43.4)         
-     CHF                    153 ( 9.8)      175 (11.2)         
-     Cirrhosis               47 ( 3.0)       47 ( 3.0)         
+     $25-$50k               251 (16.1)      262 (16.8)         
+     Under $11k             853 (54.6)      840 (53.7)         
+  ninsclas (%)                                            0.022
+     Medicaid               157 (10.0)      152 ( 9.7)         
+     Medicare               374 (23.9)      371 (23.7)         
+     Medicare & Medicaid     94 ( 6.0)       94 ( 6.0)         
+     No insurance            82 ( 5.2)       89 ( 5.7)         
+     Private                499 (31.9)      498 (31.9)         
+     Private & Medicare     357 (22.8)      359 (23.0)         
+  cat1 (%)                                                0.083
+     ARF                    734 (47.0)      679 (43.4)         
+     CHF                    169 (10.8)      175 (11.2)         
+     Cirrhosis               45 ( 2.9)       47 ( 3.0)         
      Colon Cancer             1 ( 0.1)        1 ( 0.1)         
-     Coma                    98 ( 6.3)       76 ( 4.9)         
-     COPD                    60 ( 3.8)       57 ( 3.6)         
-     Lung Cancer              3 ( 0.2)        5 ( 0.3)         
-     MOSF w/Malignancy      125 ( 8.0)      128 ( 8.2)         
-     MOSF w/Sepsis          373 (23.9)      395 (25.3)         
-  das2d3pc (mean (SD))    20.69 (5.45)    20.58 (5.08)    0.022
-  dnr1 = Yes (%)            141 ( 9.0)      130 ( 8.3)    0.025
-  ca (%)                                                  0.021
-     Metastatic              95 ( 6.1)       98 ( 6.3)         
-     No                    1208 (77.3)     1194 (76.4)         
-     Yes                    260 (16.6)      271 (17.3)         
-  surv2md1 (mean (SD))     0.58 (0.20)     0.59 (0.20)    0.035
-  aps1 (mean (SD))        57.27 (19.56)   57.27 (19.66)  <0.001
-  scoma1 (mean (SD))      19.63 (29.77)   18.85 (28.26)   0.027
-  wtkilo1 (mean (SD))     70.67 (25.85)   70.72 (27.19)   0.002
-  temp1 (mean (SD))       37.65 (1.90)    37.62 (1.74)    0.017
-  meanbp1 (mean (SD))     73.79 (35.88)   73.07 (35.74)   0.020
-  resp1 (mean (SD))       27.94 (13.94)   28.05 (14.15)   0.008
-  hrt1 (mean (SD))       117.19 (42.74)  117.77 (40.24)   0.014
-  pafi1 (mean (SD))      208.23 (108.22) 211.39 (108.01)  0.029
-  paco21 (mean (SD))      37.41 (10.41)   37.45 (11.56)   0.003
-  ph1 (mean (SD))          7.39 (0.11)     7.39 (0.11)    0.022
-  wblc1 (mean (SD))       15.97 (12.24)   15.92 (13.00)   0.003
-  hema1 (mean (SD))       30.89 (8.10)    30.91 (7.55)    0.003
-  sod1 (mean (SD))       136.68 (7.93)   136.64 (7.43)    0.005
-  pot1 (mean (SD))         4.04 (1.03)     4.05 (0.99)    0.004
-  crea1 (mean (SD))        2.28 (2.36)     2.28 (1.96)    0.001
-  bili1 (mean (SD))        2.56 (5.52)     2.55 (5.09)    0.001
-  alb1 (mean (SD))         3.03 (0.69)     3.04 (0.96)    0.009
-  resp = Yes (%)            528 (33.8)      519 (33.2)    0.012
-  card = Yes (%)            599 (38.3)      599 (38.3)   <0.001
-  neuro = Yes (%)           108 ( 6.9)      109 ( 7.0)    0.003
+     Coma                    82 ( 5.2)       76 ( 4.9)         
+     COPD                    47 ( 3.0)       57 ( 3.6)         
+     Lung Cancer              4 ( 0.3)        5 ( 0.3)         
+     MOSF w/Malignancy      116 ( 7.4)      128 ( 8.2)         
+     MOSF w/Sepsis          365 (23.4)      395 (25.3)         
+  das2d3pc (mean (SD))    20.51 (5.43)    20.58 (5.08)    0.013
+  dnr1 = Yes (%)            134 ( 8.6)      130 ( 8.3)    0.009
+  ca (%)                                                  0.009
+     Metastatic              98 ( 6.3)       98 ( 6.3)         
+     No                    1199 (76.7)     1194 (76.4)         
+     Yes                    266 (17.0)      271 (17.3)         
+  surv2md1 (mean (SD))     0.58 (0.20)     0.59 (0.20)    0.003
+  aps1 (mean (SD))        57.01 (19.83)   57.27 (19.66)   0.013
+  scoma1 (mean (SD))      18.72 (28.75)   18.85 (28.26)   0.005
+  wtkilo1 (mean (SD))     70.19 (26.33)   70.72 (27.19)   0.020
+  temp1 (mean (SD))       37.60 (1.89)    37.62 (1.74)    0.013
+  meanbp1 (mean (SD))     72.88 (34.92)   73.07 (35.74)   0.006
+  resp1 (mean (SD))       27.89 (13.76)   28.05 (14.15)   0.011
+  hrt1 (mean (SD))       116.00 (43.13)  117.77 (40.24)   0.042
+  pafi1 (mean (SD))      210.11 (106.12) 211.39 (108.01)  0.012
+  paco21 (mean (SD))      37.50 (10.46)   37.45 (11.56)   0.005
+  ph1 (mean (SD))          7.39 (0.11)     7.39 (0.11)    0.013
+  wblc1 (mean (SD))       15.76 (12.42)   15.92 (13.00)   0.013
+  hema1 (mean (SD))       30.86 (8.00)    30.91 (7.55)    0.006
+  sod1 (mean (SD))       136.56 (7.84)   136.64 (7.43)    0.010
+  pot1 (mean (SD))         4.04 (1.04)     4.05 (0.99)    0.007
+  crea1 (mean (SD))        2.30 (2.41)     2.28 (1.96)    0.009
+  bili1 (mean (SD))        2.54 (5.56)     2.55 (5.09)    0.002
+  alb1 (mean (SD))         3.03 (0.70)     3.04 (0.96)    0.009
+  resp = Yes (%)            533 (34.1)      519 (33.2)    0.019
+  card = Yes (%)            606 (38.8)      599 (38.3)    0.009
+  neuro = Yes (%)           109 ( 7.0)      109 ( 7.0)   <0.001
   gastr = Yes (%)           278 (17.8)      291 (18.6)    0.022
-  renal = Yes (%)            92 ( 5.9)       94 ( 6.0)    0.005
-  meta = Yes (%)             72 ( 4.6)       74 ( 4.7)    0.006
-  hema = Yes (%)            106 ( 6.8)       97 ( 6.2)    0.023
-  seps = Yes (%)            332 (21.2)      332 (21.2)   <0.001
+  renal = Yes (%)            90 ( 5.8)       94 ( 6.0)    0.011
+  meta = Yes (%)             65 ( 4.2)       74 ( 4.7)    0.028
+  hema = Yes (%)             88 ( 5.6)       97 ( 6.2)    0.024
+  seps = Yes (%)            322 (20.6)      332 (21.2)    0.016
   trauma = Yes (%)           15 ( 1.0)       12 ( 0.8)    0.021
   ortho = Yes (%)             1 ( 0.1)        1 ( 0.1)   <0.001
-  cardiohx (mean (SD))     0.21 (0.41)     0.20 (0.40)    0.019
-  chfhx (mean (SD))        0.19 (0.39)     0.20 (0.40)    0.024
-  dementhx (mean (SD))     0.07 (0.26)     0.07 (0.26)    0.010
-  psychhx (mean (SD))      0.06 (0.23)     0.05 (0.23)    0.006
-  chrpulhx (mean (SD))     0.15 (0.36)     0.15 (0.36)    0.004
-  renalhx (mean (SD))      0.05 (0.22)     0.05 (0.22)    0.006
-  liverhx (mean (SD))      0.06 (0.25)     0.07 (0.26)    0.023
-  gibledhx (mean (SD))     0.03 (0.17)     0.03 (0.17)    0.004
-  malighx (mean (SD))      0.22 (0.41)     0.23 (0.42)    0.020
-  immunhx (mean (SD))      0.28 (0.45)     0.28 (0.45)    0.001
-  transhx (mean (SD))      0.12 (0.33)     0.12 (0.33)    0.006
-  amihx (mean (SD))        0.04 (0.18)     0.03 (0.17)    0.025
+ cardiohx (mean (SD)) 0.21 (0.41) 0.20 (0.40) 0.024 + chfhx (mean (SD)) 0.20 (0.40) 0.20 (0.40) 0.006 + dementhx (mean (SD)) 0.09 (0.28) 0.07 (0.26) 0.040 + psychhx (mean (SD)) 0.06 (0.23) 0.05 (0.23) 0.011 + chrpulhx (mean (SD)) 0.15 (0.36) 0.15 (0.36) 0.007 + renalhx (mean (SD)) 0.05 (0.23) 0.05 (0.22) 0.020 + liverhx (mean (SD)) 0.07 (0.25) 0.07 (0.26) 0.013 + gibledhx (mean (SD)) 0.03 (0.16) 0.03 (0.17) 0.023 + malighx (mean (SD)) 0.22 (0.42) 0.23 (0.42) 0.011 + immunhx (mean (SD)) 0.29 (0.45) 0.28 (0.45) 0.017 + transhx (mean (SD)) 0.12 (0.32) 0.12 (0.33) 0.010 + amihx (mean (SD)) 0.03 (0.18) 0.03 (0.17) 0.022 
## Count covariates with important imbalance
 addmargins(table(ExtractSmd(tabMatched) > 0.1))

@@ -598,81 +598,81 @@ 

 
                       Unmatched                       Matched                         MW                               
 Group                  No RHC          RHC             No RHC          RHC             No RHC           RHC             
 n                        3551            2184            1563            1563          1522.89          1520.27         
-age (mean (SD))         61.76 (17.29)   60.75 (15.63)   60.53 (17.34)   60.58 (15.72)    60.82 (17.16)    60.77 (15.79) 
-sex = Male (%)           1914 (53.9)     1278 (58.5)      896 (57.3)      892 (57.1)     875.8 (57.5)     872.3 (57.4)  
+age (mean (SD))         61.76 (17.29)   60.75 (15.63)   60.88 (17.24)   60.58 (15.72)    60.82 (17.16)    60.77 (15.79) 
+sex = Male (%)           1914 (53.9)     1278 (58.5)      884 (56.6)      892 (57.1)     875.8 (57.5)     872.3 (57.4)  
 race (%)                                                                                                                
-   black                  585 (16.5)      335 (15.3)      244 (15.6)      247 (15.8)     238.1 (15.6)     235.8 (15.5)  
+   black                  585 (16.5)      335 (15.3)      242 (15.5)      247 (15.8)     238.1 (15.6)     235.8 (15.5)  
    other                  213 ( 6.0)      142 ( 6.5)       99 ( 6.3)       99 ( 6.3)      94.9 ( 6.2)      97.8 ( 6.4)  
-   white                 2753 (77.5)     1707 (78.2)     1220 (78.1)     1217 (77.9)    1189.9 (78.1)    1186.6 (78.1)  
-edu (mean (SD))         11.57 (3.13)    11.86 (3.16)    11.84 (3.12)    11.78 (3.16)     11.80 (3.17)     11.80 (3.09)  
+   white                 2753 (77.5)     1707 (78.2)     1222 (78.2)     1217 (77.9)    1189.9 (78.1)    1186.6 (78.1)  
+edu (mean (SD))         11.57 (3.13)    11.86 (3.16)    11.81 (3.14)    11.78 (3.16)     11.80 (3.17)     11.80 (3.09)  
 income (%)                                                                                                              
-   > $50k                 257 ( 7.2)      194 ( 8.9)      138 ( 8.8)      124 ( 7.9)     127.1 ( 8.3)     128.4 ( 8.4)  
+   > $50k                 257 ( 7.2)      194 ( 8.9)      136 ( 8.7)      124 ( 7.9)     127.1 ( 8.3)     128.4 ( 8.4)  
    $11-$25k               713 (20.1)      452 (20.7)      323 (20.7)      337 (21.6)     316.5 (20.8)     317.0 (20.9)  
-   $25-$50k               500 (14.1)      393 (18.0)      263 (16.8)      262 (16.8)     251.7 (16.5)     250.8 (16.5)  
-   Under $11k            2081 (58.6)     1145 (52.4)      839 (53.7)      840 (53.7)     827.6 (54.3)     824.1 (54.2)  
+   $25-$50k               500 (14.1)      393 (18.0)      251 (16.1)      262 (16.8)     251.7 (16.5)     250.8 (16.5)  
+   Under $11k            2081 (58.6)     1145 (52.4)      853 (54.6)      840 (53.7)     827.6 (54.3)     824.1 (54.2)  
 ninsclas (%)                                                                                                            
-   Medicaid               454 (12.8)      193 ( 8.8)      168 (10.7)      152 ( 9.7)     153.7 (10.1)     151.9 (10.0)  
-   Medicare               947 (26.7)      511 (23.4)      356 (22.8)      371 (23.7)     361.1 (23.7)     369.0 (24.3)  
-   Medicare & Medicaid    251 ( 7.1)      123 ( 5.6)       89 ( 5.7)       94 ( 6.0)      91.5 ( 6.0)      91.2 ( 6.0)  
-   No insurance           186 ( 5.2)      136 ( 6.2)       86 ( 5.5)       89 ( 5.7)      85.8 ( 5.6)      86.6 ( 5.7)  
-   Private                967 (27.2)      731 (33.5)      509 (32.6)      498 (31.9)     487.0 (32.0)     482.2 (31.7)  
-   Private & Medicare     746 (21.0)      490 (22.4)      355 (22.7)      359 (23.0)     343.7 (22.6)     339.3 (22.3)  
+   Medicaid               454 (12.8)      193 ( 8.8)      157 (10.0)      152 ( 9.7)     153.7 (10.1)     151.9 (10.0)  
+   Medicare               947 (26.7)      511 (23.4)      374 (23.9)      371 (23.7)     361.1 (23.7)     369.0 (24.3)  
+   Medicare & Medicaid    251 ( 7.1)      123 ( 5.6)       94 ( 6.0)       94 ( 6.0)      91.5 ( 6.0)      91.2 ( 6.0)  
+   No insurance           186 ( 5.2)      136 ( 6.2)       82 ( 5.2)       89 ( 5.7)      85.8 ( 5.6)      86.6 ( 5.7)  
+   Private                967 (27.2)      731 (33.5)      499 (31.9)      498 (31.9)     487.0 (32.0)     482.2 (31.7)  
+   Private & Medicare     746 (21.0)      490 (22.4)      357 (22.8)      359 (23.0)     343.7 (22.6)     339.3 (22.3)  
 cat1 (%)                                                                                                                
-   ARF                   1581 (44.5)      909 (41.6)      703 (45.0)      679 (43.4)     685.8 (45.0)     679.9 (44.7)  
-   CHF                    247 ( 7.0)      209 ( 9.6)      153 ( 9.8)      175 (11.2)     160.1 (10.5)     163.2 (10.7)  
-   Cirrhosis              175 ( 4.9)       49 ( 2.2)       47 ( 3.0)       47 ( 3.0)      45.0 ( 3.0)      47.0 ( 3.1)  
+   ARF                   1581 (44.5)      909 (41.6)      734 (47.0)      679 (43.4)     685.8 (45.0)     679.9 (44.7)  
+   CHF                    247 ( 7.0)      209 ( 9.6)      169 (10.8)      175 (11.2)     160.1 (10.5)     163.2 (10.7)  
+   Cirrhosis              175 ( 4.9)       49 ( 2.2)       45 ( 2.9)       47 ( 3.0)      45.0 ( 3.0)      47.0 ( 3.1)  
    Colon Cancer             6 ( 0.2)        1 ( 0.0)        1 ( 0.1)        1 ( 0.1)       0.9 ( 0.1)       1.0 ( 0.1)  
-   Coma                   341 ( 9.6)       95 ( 4.3)       98 ( 6.3)       76 ( 4.9)      79.4 ( 5.2)      77.4 ( 5.1)  
-   COPD                   399 (11.2)       58 ( 2.7)       60 ( 3.8)       57 ( 3.6)      56.2 ( 3.7)      57.2 ( 3.8)  
-   Lung Cancer             34 ( 1.0)        5 ( 0.2)        3 ( 0.2)        5 ( 0.3)       4.2 ( 0.3)       5.0 ( 0.3)  
-   MOSF w/Malignancy      241 ( 6.8)      158 ( 7.2)      125 ( 8.0)      128 ( 8.2)     122.4 ( 8.0)     121.5 ( 8.0)  
-   MOSF w/Sepsis          527 (14.8)      700 (32.1)      373 (23.9)      395 (25.3)     368.9 (24.2)     368.1 (24.2)  
-das2d3pc (mean (SD))    20.37 (5.48)    20.70 (5.03)    20.69 (5.45)    20.58 (5.08)     20.58 (5.45)     20.56 (5.05)  
-dnr1 = Yes (%)            499 (14.1)      155 ( 7.1)      141 ( 9.0)      130 ( 8.3)     131.5 ( 8.6)     129.2 ( 8.5)  
+   Coma                   341 ( 9.6)       95 ( 4.3)       82 ( 5.2)       76 ( 4.9)      79.4 ( 5.2)      77.4 ( 5.1)  
+   COPD                   399 (11.2)       58 ( 2.7)       47 ( 3.0)       57 ( 3.6)      56.2 ( 3.7)      57.2 ( 3.8)  
+   Lung Cancer             34 ( 1.0)        5 ( 0.2)        4 ( 0.3)        5 ( 0.3)       4.2 ( 0.3)       5.0 ( 0.3)  
+   MOSF w/Malignancy      241 ( 6.8)      158 ( 7.2)      116 ( 7.4)      128 ( 8.2)     122.4 ( 8.0)     121.5 ( 8.0)  
+   MOSF w/Sepsis          527 (14.8)      700 (32.1)      365 (23.4)      395 (25.3)     368.9 (24.2)     368.1 (24.2)  
+das2d3pc (mean (SD))    20.37 (5.48)    20.70 (5.03)    20.51 (5.43)    20.58 (5.08)     20.58 (5.45)     20.56 (5.05)  
+dnr1 = Yes (%)            499 (14.1)      155 ( 7.1)      134 ( 8.6)      130 ( 8.3)     131.5 ( 8.6)     129.2 ( 8.5)  
 ca (%)                                                                                                                  
-   Metastatic             261 ( 7.4)      123 ( 5.6)       95 ( 6.1)       98 ( 6.3)      98.6 ( 6.5)      98.0 ( 6.4)  
-   No                    2652 (74.7)     1727 (79.1)     1208 (77.3)     1194 (76.4)    1160.5 (76.2)    1162.3 (76.5)  
-   Yes                    638 (18.0)      334 (15.3)      260 (16.6)      271 (17.3)     263.7 (17.3)     259.9 (17.1)  
+   Metastatic             261 ( 7.4)      123 ( 5.6)       98 ( 6.3)       98 ( 6.3)      98.6 ( 6.5)      98.0 ( 6.4)  
+   No                    2652 (74.7)     1727 (79.1)     1199 (76.7)     1194 (76.4)    1160.5 (76.2)    1162.3 (76.5)  
+   Yes                    638 (18.0)      334 (15.3)      266 (17.0)      271 (17.3)     263.7 (17.3)     259.9 (17.1)  
 surv2md1 (mean (SD))     0.61 (0.19)     0.57 (0.20)     0.58 (0.20)     0.59 (0.20)      0.58 (0.20)      0.58 (0.20)  
-aps1 (mean (SD))        50.93 (18.81)   60.74 (20.27)   57.27 (19.56)   57.27 (19.66)    57.30 (19.53)    57.13 (19.73) 
-scoma1 (mean (SD))      22.25 (31.37)   18.97 (28.26)   19.63 (29.77)   18.85 (28.26)    19.12 (29.10)    19.10 (28.51) 
-wtkilo1 (mean (SD))     65.04 (29.50)   72.36 (27.73)   70.67 (25.85)   70.72 (27.19)    70.19 (26.54)    70.19 (27.30) 
-temp1 (mean (SD))       37.63 (1.74)    37.59 (1.83)    37.65 (1.90)    37.62 (1.74)     37.63 (1.88)     37.64 (1.74)  
-meanbp1 (mean (SD))     84.87 (38.87)   68.20 (34.24)   73.79 (35.88)   73.07 (35.74)    73.18 (35.48)    73.22 (35.50) 
-resp1 (mean (SD))       28.98 (13.95)   26.65 (14.17)   27.94 (13.94)   28.05 (14.15)    28.16 (13.84)    28.10 (14.09) 
-hrt1 (mean (SD))       112.87 (40.94)  118.93 (41.47)  117.19 (42.74)  117.77 (40.24)   116.96 (42.74)   116.71 (40.28) 
-pafi1 (mean (SD))      240.63 (116.66) 192.43 (105.54) 208.23 (108.22) 211.39 (108.01)  209.93 (107.48)  210.31 (108.23)
-paco21 (mean (SD))      39.95 (14.24)   36.79 (10.97)   37.41 (10.41)   37.45 (11.56)    37.56 (10.80)    37.51 (11.59) 
+aps1 (mean (SD))        50.93 (18.81)   60.74 (20.27)   57.01 (19.83)   57.27 (19.66)    57.30 (19.53)    57.13 (19.73) 
+scoma1 (mean (SD))      22.25 (31.37)   18.97 (28.26)   18.72 (28.75)   18.85 (28.26)    19.12 (29.10)    19.10 (28.51) 
+wtkilo1 (mean (SD))     65.04 (29.50)   72.36 (27.73)   70.19 (26.33)   70.72 (27.19)    70.19 (26.54)    70.19 (27.30) 
+temp1 (mean (SD))       37.63 (1.74)    37.59 (1.83)    37.60 (1.89)    37.62 (1.74)     37.63 (1.88)     37.64 (1.74)  
+meanbp1 (mean (SD))     84.87 (38.87)   68.20 (34.24)   72.88 (34.92)   73.07 (35.74)    73.18 (35.48)    73.22 (35.50) 
+resp1 (mean (SD))       28.98 (13.95)   26.65 (14.17)   27.89 (13.76)   28.05 (14.15)    28.16 (13.84)    28.10 (14.09) 
+hrt1 (mean (SD))       112.87 (40.94)  118.93 (41.47)  116.00 (43.13)  117.77 (40.24)   116.96 (42.74)   116.71 (40.28) 
+pafi1 (mean (SD))      240.63 (116.66) 192.43 (105.54) 210.11 (106.12) 211.39 (108.01)  209.93 (107.48)  210.31 (108.23)
+paco21 (mean (SD))      39.95 (14.24)   36.79 (10.97)   37.50 (10.46)   37.45 (11.56)    37.56 (10.80)    37.51 (11.59) 
 ph1 (mean (SD))          7.39 (0.11)     7.38 (0.11)     7.39 (0.11)     7.39 (0.11)      7.39 (0.11)      7.39 (0.11)  
-wblc1 (mean (SD))       15.26 (11.41)   16.27 (12.55)   15.97 (12.24)   15.92 (13.00)    15.82 (12.03)    15.69 (12.69) 
-hema1 (mean (SD))       32.70 (8.79)    30.51 (7.42)    30.89 (8.10)    30.91 (7.55)     30.90 (8.10)     30.95 (7.57)  
-sod1 (mean (SD))       137.04 (7.68)   136.33 (7.60)   136.68 (7.93)   136.64 (7.43)    136.54 (7.86)    136.58 (7.38)  
-pot1 (mean (SD))         4.08 (1.04)     4.05 (1.01)     4.04 (1.03)     4.05 (0.99)      4.04 (1.04)      4.05 (0.99)  
-crea1 (mean (SD))        1.92 (2.03)     2.47 (2.05)     2.28 (2.36)     2.28 (1.96)      2.27 (2.31)      2.27 (1.95)  
-bili1 (mean (SD))        2.00 (4.43)     2.71 (5.33)     2.56 (5.52)     2.55 (5.09)      2.50 (5.37)      2.54 (5.15)  
-alb1 (mean (SD))         3.16 (0.67)     2.98 (0.93)     3.03 (0.69)     3.04 (0.96)      3.04 (0.70)      3.04 (0.97)  
-resp = Yes (%)           1481 (41.7)      632 (28.9)      528 (33.8)      519 (33.2)     516.6 (33.9)     512.6 (33.7)  
-card = Yes (%)           1007 (28.4)      924 (42.3)      599 (38.3)      599 (38.3)     582.2 (38.2)     585.6 (38.5)  
-neuro = Yes (%)           575 (16.2)      118 ( 5.4)      108 ( 6.9)      109 ( 7.0)     109.6 ( 7.2)     109.0 ( 7.2)  
+wblc1 (mean (SD))       15.26 (11.41)   16.27 (12.55)   15.76 (12.42)   15.92 (13.00)    15.82 (12.03)    15.69 (12.69) 
+hema1 (mean (SD))       32.70 (8.79)    30.51 (7.42)    30.86 (8.00)    30.91 (7.55)     30.90 (8.10)     30.95 (7.57)  
+sod1 (mean (SD))       137.04 (7.68)   136.33 (7.60)   136.56 (7.84)   136.64 (7.43)    136.54 (7.86)    136.58 (7.38)  
+pot1 (mean (SD))         4.08 (1.04)     4.05 (1.01)     4.04 (1.04)     4.05 (0.99)      4.04 (1.04)      4.05 (0.99)  
+crea1 (mean (SD))        1.92 (2.03)     2.47 (2.05)     2.30 (2.41)     2.28 (1.96)      2.27 (2.31)      2.27 (1.95)  
+bili1 (mean (SD))        2.00 (4.43)     2.71 (5.33)     2.54 (5.56)     2.55 (5.09)      2.50 (5.37)      2.54 (5.15)  
+alb1 (mean (SD))         3.16 (0.67)     2.98 (0.93)     3.03 (0.70)     3.04 (0.96)      3.04 (0.70)      3.04 (0.97)  
+resp = Yes (%)           1481 (41.7)      632 (28.9)      533 (34.1)      519 (33.2)     516.6 (33.9)     512.6 (33.7)  
+card = Yes (%)           1007 (28.4)      924 (42.3)      606 (38.8)      599 (38.3)     582.2 (38.2)     585.6 (38.5)  
+neuro = Yes (%)           575 (16.2)      118 ( 5.4)      109 ( 7.0)      109 ( 7.0)     109.6 ( 7.2)     109.0 ( 7.2)  
 gastr = Yes (%)           522 (14.7)      420 (19.2)      278 (17.8)      291 (18.6)     270.3 (17.8)     272.7 (17.9)  
-renal = Yes (%)           147 ( 4.1)      148 ( 6.8)       92 ( 5.9)       94 ( 6.0)      89.5 ( 5.9)      90.7 ( 6.0)  
-meta = Yes (%)            172 ( 4.8)       93 ( 4.3)       72 ( 4.6)       74 ( 4.7)      70.0 ( 4.6)      70.2 ( 4.6)  
-hema = Yes (%)            239 ( 6.7)      115 ( 5.3)      106 ( 6.8)       97 ( 6.2)      93.5 ( 6.1)      95.0 ( 6.2)  
-seps = Yes (%)            515 (14.5)      516 (23.6)      332 (21.2)      332 (21.2)     325.5 (21.4)     322.0 (21.2)  
+renal = Yes (%)           147 ( 4.1)      148 ( 6.8)       90 ( 5.8)       94 ( 6.0)      89.5 ( 5.9)      90.7 ( 6.0)  
+meta = Yes (%)            172 ( 4.8)       93 ( 4.3)       65 ( 4.2)       74 ( 4.7)      70.0 ( 4.6)      70.2 ( 4.6)  
+hema = Yes (%)            239 ( 6.7)      115 ( 5.3)       88 ( 5.6)       97 ( 6.2)      93.5 ( 6.1)      95.0 ( 6.2)  
+seps = Yes (%)            515 (14.5)      516 (23.6)      322 (20.6)      332 (21.2)     325.5 (21.4)     322.0 (21.2)  
 trauma = Yes (%)           18 ( 0.5)       34 ( 1.6)       15 ( 1.0)       12 ( 0.8)      14.8 ( 1.0)      14.3 ( 0.9)  
 ortho = Yes (%)             3 ( 0.1)        4 ( 0.2)        1 ( 0.1)        1 ( 0.1)       1.0 ( 0.1)       0.9 ( 0.1)  
 cardiohx (mean (SD))     0.16 (0.37)     0.20 (0.40)     0.21 (0.41)     0.20 (0.40)      0.20 (0.40)      0.20 (0.40)  
-chfhx (mean (SD))        0.17 (0.37)     0.19 (0.40)     0.19 (0.39)     0.20 (0.40)      0.20 (0.40)      0.20 (0.40)  
-dementhx (mean (SD))     0.12 (0.32)     0.07 (0.25)     0.07 (0.26)     0.07 (0.26)      0.08 (0.26)      0.08 (0.26)  
+chfhx (mean (SD))        0.17 (0.37)     0.19 (0.40)     0.20 (0.40)     0.20 (0.40)      0.20 (0.40)      0.20 (0.40)  
+dementhx (mean (SD))     0.12 (0.32)     0.07 (0.25)     0.09 (0.28)     0.07 (0.26)      0.08 (0.26)      0.08 (0.26)  
 psychhx (mean (SD))      0.08 (0.27)     0.05 (0.21)     0.06 (0.23)     0.05 (0.23)      0.05 (0.23)      0.05 (0.22)  
 chrpulhx (mean (SD))     0.22 (0.41)     0.14 (0.35)     0.15 (0.36)     0.15 (0.36)      0.16 (0.36)      0.16 (0.36)  
-renalhx (mean (SD))      0.04 (0.20)     0.05 (0.21)     0.05 (0.22)     0.05 (0.22)      0.05 (0.22)      0.05 (0.22)  
-liverhx (mean (SD))      0.07 (0.26)     0.06 (0.24)     0.06 (0.25)     0.07 (0.26)      0.07 (0.25)      0.07 (0.25)  
-gibledhx (mean (SD))     0.04 (0.19)     0.02 (0.16)     0.03 (0.17)     0.03 (0.17)      0.03 (0.17)      0.03 (0.17)  
-malighx (mean (SD))      0.25 (0.43)     0.20 (0.40)     0.22 (0.41)     0.23 (0.42)      0.23 (0.42)      0.23 (0.42)  
-immunhx (mean (SD))      0.26 (0.44)     0.29 (0.45)     0.28 (0.45)     0.28 (0.45)      0.28 (0.45)      0.28 (0.45)  
-transhx (mean (SD))      0.09 (0.29)     0.15 (0.36)     0.12 (0.33)     0.12 (0.33)      0.12 (0.33)      0.12 (0.33)  
-amihx (mean (SD))        0.03 (0.17)     0.04 (0.20)     0.04 (0.18)     0.03 (0.17)      0.03 (0.18)      0.03 (0.18)  
+renalhx (mean (SD))      0.04 (0.20)     0.05 (0.21)     0.05 (0.23)     0.05 (0.22)      0.05 (0.22)      0.05 (0.22)  
+liverhx (mean (SD))      0.07 (0.26)     0.06 (0.24)     0.07 (0.25)     0.07 (0.26)      0.07 (0.25)      0.07 (0.25)  
+gibledhx (mean (SD))     0.04 (0.19)     0.02 (0.16)     0.03 (0.16)     0.03 (0.17)      0.03 (0.17)      0.03 (0.17)  
+malighx (mean (SD))      0.25 (0.43)     0.20 (0.40)     0.22 (0.42)     0.23 (0.42)      0.23 (0.42)      0.23 (0.42)  
+immunhx (mean (SD))      0.26 (0.44)     0.29 (0.45)     0.29 (0.45)     0.28 (0.45)      0.28 (0.45)      0.28 (0.45)  
+transhx (mean (SD))      0.09 (0.29)     0.15 (0.36)     0.12 (0.32)     0.12 (0.33)      0.12 (0.33)      0.12 (0.33)  
+amihx (mean (SD))        0.03 (0.17)     0.04 (0.20)     0.03 (0.18)     0.03 (0.17)      0.03 (0.18)      0.03 (0.18)  
                        OW                               
 Group                  No RHC           RHC             
 n                      1005.82          1005.82         
@@ -781,8 +781,8 @@ 

 
 $Matched
             exp(coef) [confint] p     
-(Intercept) 1.76 [1.59, 1.95]   <0.001
-swang1RHC   1.28 [1.10, 1.49]    0.001
+(Intercept) 1.74 [1.57, 1.93]   <0.001
+swang1RHC   1.29 [1.11, 1.50]    0.001
 
 $Weighted
             exp(coef) [confint] p     
diff --git a/docs/articles/smd_files/figure-html/unnamed-chunk-9-1.png b/docs/articles/smd_files/figure-html/unnamed-chunk-9-1.png
index bdee481..40addf5 100644
Binary files a/docs/articles/smd_files/figure-html/unnamed-chunk-9-1.png and b/docs/articles/smd_files/figure-html/unnamed-chunk-9-1.png differ
diff --git a/docs/index.html b/docs/index.html
index c0fcb53..c07aa04 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -85,22 +85,24 @@
 
       

   

-

+
+

 

-tableone (developmental repo)

+tableone

 
 
An R package to create “Table 1”, description of baseline characteristics

 
Creates “Table 1”, i.e., description of baseline patient characteristics, which is essential in every medical research. Supports both continuous and categorical variables, as well as p-values and standardized mean differences. Weighted data are supported via the survey package.

 
tableone was inspired by descriptive statistics functions in Deducer , a Java-based GUI package by Ian Fellows. This package does not require GUI or Java, and intended for command-line users.

-

-

-tableone in action

+

+

+

+tableone in action

 
screencast

 
The code being executed can be found in the introduction vignette.

 

-

-

-tableone code example

+

+

+tableone code example

 
In this table, continuous and categorical variables can be placed in any order. The p-valeus are from exact tests for pre-specified variables. For nonnormal variables, it shows median and IQR instead of mean and SD, and p-values are from nonparametric tests. Numerically coded categorical variables can be transformed on the fly with factorVars. SMD stands for standardized mean differences. For weighted data, first created a svydesign object, and use the svyCreateTableOne() function. Most other options remain the same.

 
## Load package
 library(tableone)
@@ -151,9 +153,9 @@ 

 ##      3                          56 (35.4)                   64 (41.6)                                  
 ##      4                          55 (34.8)                   54 (35.1)

 

-

-

-Installation

+

+

+Installation

 
This version of tableone package for R is developmetal, and may not be available from the CRAN. You can install it using one of the following way.

 
Direct installation from github

 
You first need to install the devtools package to do the following. You can choose from the latest stable version and the latest development version.

@@ -164,9 +166,9 @@ 

 
Using devtools may requires some preparation, please see the following link for information.

 
http://www.rstudio.com/projects/devtools/

 

-

-

-Contributors

+

+

+Contributors

 
I would like to thank all the contributors!

 
 

-

-

-Similar or complementary projects

+

+

+Similar or complementary projects

 
There are multiple similar or complementary projects of interest.

 
 

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+