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Model Runs with Variable Inclusion of Strain Data #278

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bklein7 opened this issue Nov 10, 2016 · 3 comments
Open

Model Runs with Variable Inclusion of Strain Data #278

bklein7 opened this issue Nov 10, 2016 · 3 comments

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@bklein7
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bklein7 commented Nov 10, 2016

The model runs performed using the 5, "15"-gene networks #265 will be repeated with variable inclusion of strain data.

Runs for each of the networks will be performed iteratively, starting with only data from one strain and progressively adding strains until all are included in the input sheet.

@kdahlquist
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This is going to be done as part of the testing associated with #323.

@kdahlquist kdahlquist assigned kdahlquist and unassigned Nwilli31 and bklein7 Feb 17, 2017
@kdahlquist
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This was done with the L-curve runs #351.

@kdahlquist
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So some of this was done in the L-curve runs of #38. However, not all permutations were tried. We are going to wait a little for the GRNmap coding team @cazinge and @jtorre39 to fix the minLSE computation before doing any more L-curve runs, but once that is done, we'll complete the permutations.

We can use the multicore computer in @kdahlquist's office to do multiple runs at once.

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