setup.py

#!/usr/bin/env python
# -*- coding: utf-8 -*-

from setuptools import setup
from setuptools.extension import Extension
from seqlib.version import __version__
from Cython.Build import cythonize

ext_modules = [Extension('seqlib.align', ['seqlib/align.pyx'])]

setup(name='seqlib',
      version=__version__,
      description='NGS analysis toolkits',
      author='Xiao-Ou Zhang',
      author_email='kepbod@gmail.com',
      url='https://github.com/kepbod/seqlib',
      license='MIT',
      classifiers=[
          'Development Status :: 3 - Alpha',
          'Intended Audience :: Science/Research',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'License :: OSI Approved :: MIT License',
          'Programming Language :: Python :: 3',
      ],
      keywords='NGS',
      packages=['seqlib'],
      package_data={'seqlib': ['data/*.msg']},
      ext_modules=cythonize(ext_modules),
      install_requires=[
          'future',
          'requests',
          'pysam>=0.8.4',
          'pybedtools>=0.7.8',
          'docopt',
          'beautifulsoup4',
          'lxml',
          'Cython'
      ],
      scripts=[
          'bin/fetch_geoinfo.py',
          'bin/extract_junc.py',
          'bin/extract_region.py'
      ]
      )