output graph doesn't display any of the selected genes

[ofleitas]

Hello

I am trying to highlight some genes in the volcano plot. However, the output graph doesn't display any of the selected genes.

This is the code:

p <- EnhancedVolcano(X, lab = row.names(X), x = 'log2FC', y = 'padj',title = 'Control treated vs Resistant treated', pCutoff = 1e-02, FCcutoff = 1, pointSize = 3, labSize = 3, colAlpha = 1, cutoffLineType = 'dashed', cutoffLineWidth = 0.8, legendLabels = c('NS','Log2FC','padj','padj & Log2FC'), gridlines.major = FALSE, gridlines.minor = FALSE, legendPosition = 'right', legendLabSize = 16, legendIconSize = 5, subtitle = NULL, drawConnectors = TRUE, widthConnectors = 0.75, boxedLabels = TRUE,max.overlap = 25, selectLab = c("csbX","rfbD","rffG","phoP","dcd","aphA","mdtB","galF","sotB"))

[hmlopezbertoni]

I'm having the same issue, were you able to find a solution?

[ofleitas]

Hello I replaced lab = rownames(X) by lab=X$gene_ID, that worked for me.

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On Sat, Apr 8, 2023 at 12:04 PM hmlopezbertoni ***@***.***> wrote: I'm having the same issue, were you able to find a solution? — Reply to this email directly, view it on GitHub <#111 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AM624NGVZNFFIDWCN6NNDCLXAGSBXANCNFSM6AAAAAAWQMP4VQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>