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environment.yml
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name: subtype
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_10
- bioconductor-annotate=1.72.0=r41hdfd78af_0
- bioconductor-annotationdbi=1.56.1=r41hdfd78af_0
- bioconductor-annotationfilter=1.18.0=r41hdfd78af_0
- bioconductor-annotationhub=3.2.0=r41hdfd78af_0
- bioconductor-apeglm=1.16.0=r41h619a076_1
- bioconductor-beachmat=2.10.0=r41h619a076_1
- bioconductor-biobase=2.54.0=r41h5c21468_1
- bioconductor-biocfilecache=2.2.0=r41hdfd78af_0
- bioconductor-biocgenerics=0.40.0=r41hdfd78af_0
- bioconductor-biocio=1.4.0=r41hdfd78af_0
- bioconductor-biocneighbors=1.12.0=r41h619a076_1
- bioconductor-biocparallel=1.28.3=r41h619a076_0
- bioconductor-biocsingular=1.10.0=r41h619a076_1
- bioconductor-biocversion=3.14.0=r41hdfd78af_0
- bioconductor-biomart=2.50.0=r41hdfd78af_0
- bioconductor-biostrings=2.62.0=r41h5c21468_1
- bioconductor-bluster=1.4.0=r41h619a076_1
- bioconductor-clusterprofiler=4.2.0=r41hdfd78af_0
- bioconductor-complexheatmap=2.10.0=r41hdfd78af_0
- bioconductor-delayedarray=0.20.0=r41h5c21468_1
- bioconductor-delayedmatrixstats=1.16.0=r41hdfd78af_0
- bioconductor-deseq2=1.34.0=r41h619a076_1
- bioconductor-do.db=2.9=r41hdfd78af_12
- bioconductor-dose=3.20.0=r41hdfd78af_0
- bioconductor-edger=3.36.0=r41h619a076_1
- bioconductor-enrichplot=1.14.1=r41hdfd78af_0
- bioconductor-ensembldb=2.18.1=r41hdfd78af_0
- bioconductor-fgsea=1.20.0=r41h619a076_1
- bioconductor-genefilter=1.76.0=r41ha086028_1
- bioconductor-geneplotter=1.72.0=r41hdfd78af_0
- bioconductor-genomeinfodb=1.30.0=r41hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.7=r41hdfd78af_1
- bioconductor-genomicalignments=1.30.0=r41h5c21468_1
- bioconductor-genomicfeatures=1.46.1=r41hdfd78af_0
- bioconductor-genomicranges=1.46.1=r41h5c21468_0
- bioconductor-ggtree=3.2.0=r41hdfd78af_0
- bioconductor-go.db=3.14.0=r41hdfd78af_0
- bioconductor-gosemsim=2.20.0=r41h619a076_1
- bioconductor-interactivedisplaybase=1.32.0=r41hdfd78af_0
- bioconductor-iranges=2.28.0=r41h5c21468_1
- bioconductor-keggrest=1.34.0=r41hdfd78af_0
- bioconductor-limma=3.50.1=r41h5c21468_0
- bioconductor-matrixgenerics=1.6.0=r41hdfd78af_0
- bioconductor-metapod=1.2.0=r41h619a076_1
- bioconductor-org.hs.eg.db=3.14.0=r41hdfd78af_0
- bioconductor-pcatools=2.6.0=r41h619a076_1
- bioconductor-protgenerics=1.26.0=r41hdfd78af_0
- bioconductor-qvalue=2.26.0=r41hdfd78af_0
- bioconductor-rhtslib=1.26.0=r41h5c21468_1
- bioconductor-rsamtools=2.10.0=r41h619a076_1
- bioconductor-rtracklayer=1.54.0=r41hd029910_0
- bioconductor-s4vectors=0.32.3=r41h5c21468_0
- bioconductor-scaledmatrix=1.2.0=r41hdfd78af_0
- bioconductor-scran=1.22.1=r41h619a076_0
- bioconductor-scuttle=1.4.0=r41h619a076_1
- bioconductor-singlecellexperiment=1.16.0=r41hdfd78af_0
- bioconductor-sparsematrixstats=1.6.0=r41h619a076_1
- bioconductor-summarizedexperiment=1.24.0=r41hdfd78af_0
- bioconductor-treeio=1.18.0=r41hdfd78af_0
- bioconductor-tximeta=1.12.0=r41hdfd78af_0
- bioconductor-tximport=1.22.0=r41hdfd78af_0
- bioconductor-xvector=0.34.0=r41h5c21468_1
- bioconductor-zlibbioc=1.40.0=r41h5c21468_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.6.15=ha878542_0
- cairo=1.16.0=ha61ee94_1011
- curl=7.83.1=h2283fc2_0
- expat=2.4.8=h27087fc_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=h8e229c2_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=10.3.0=hf2f2afa_16
- gcc_linux-64=10.3.0=hc39de41_10
- gettext=0.19.8.1=h73d1719_1008
- gfortran_impl_linux-64=10.3.0=h73f4979_16
- gfortran_linux-64=10.3.0=hb09a455_10
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=10.3.0=hf2f2afa_16
- gxx_linux-64=10.3.0=h2593f52_10
- harfbuzz=4.3.0=hf9f4e7c_0
- icu=70.1=h27087fc_0
- importlib-metadata=4.11.4=py310hff52083_0
- jpeg=9e=h166bdaf_1
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h08a2579_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=15_linux64_openblas
- libcblas=3.9.0=15_linux64_openblas
- libcurl=7.83.1=h2283fc2_0
- libdeflate=1.12=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=10.3.0=he6cfe16_16
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libgit2=1.4.3=h4c07d5c_0
- libglib=2.70.2=h174f98d_4
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=15_linux64_openblas
- libnghttp2=1.47.0=he49606f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- libpng=1.6.37=h21135ba_2
- libsanitizer=10.3.0=h26c7422_16
- libssh2=1.10.0=ha35d2d1_2
- libstdcxx-devel_linux-64=10.3.0=he6cfe16_16
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtiff=4.4.0=hc85c160_1
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.14=h22db469_0
- libzlib=1.2.12=h166bdaf_1
- lz4-c=1.9.3=h9c3ff4c_1
- make=4.3=hd18ef5c_1
- markdown=3.3.7=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nlopt=2.7.1=py310h3342525_1
- numpy=1.23.0=py310h53a5b5f_0
- openssl=3.0.4=h166bdaf_2
- pandoc=2.18=ha770c72_0
- pango=1.50.7=hbd2fdc8_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- pip=22.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- python=3.10.5=ha86cf86_0_cpython
- python_abi=3.10=2_cp310
- r=4.1=r41hd8ed1ab_1004
- r-abind=1.4_5=r41hc72bb7e_1003
- r-ape=5.6_2=r41h43535f1_0
- r-aplot=0.1.6=r41hc72bb7e_0
- r-askpass=1.1=r41hcfec24a_2
- r-assertthat=0.2.1=r41hc72bb7e_2
- r-backports=1.4.1=r41hcfec24a_0
- r-base=4.1.3=h06d3f91_1
- r-base64enc=0.1_3=r41hcfec24a_1004
- r-bbmle=1.0.25=r41hc72bb7e_0
- r-bdsmatrix=1.3_6=r41h06615bd_0
- r-bh=1.78.0_0=r41hc72bb7e_0
- r-bibtex=0.4.2.3=r41hcfec24a_0
- r-biocmanager=1.30.18=r41hc72bb7e_0
- r-bit=4.0.4=r41hcfec24a_0
- r-bit64=4.0.5=r41hcfec24a_0
- r-bitops=1.0_7=r41hcfec24a_0
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- r-brio=1.1.3=r41hcfec24a_0
- r-broom=0.8.0=r41hc72bb7e_0
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- r-cachem=1.0.6=r41hcfec24a_0
- r-callr=3.7.0=r41hc72bb7e_0
- r-car=3.1_0=r41hc72bb7e_0
- r-cardata=3.0_5=r41hc72bb7e_0
- r-caret=6.0_92=r41h06615bd_0
- r-catools=1.18.2=r41h03ef668_0
- r-cellranger=1.1.0=r41hc72bb7e_1004
- r-circlize=0.4.15=r41hc72bb7e_0
- r-class=7.3_20=r41hcfec24a_0
- r-cli=3.3.0=r41h7525677_0
- r-clipr=0.8.0=r41hc72bb7e_0
- r-clue=0.3_60=r41hcfec24a_0
- r-cluster=2.1.3=r41h8da6f51_0
- r-coda=0.19_4=r41hc72bb7e_0
- r-codetools=0.2_18=r41hc72bb7e_0
- r-colorspace=2.0_3=r41h06615bd_0
- r-commonmark=1.8.0=r41h06615bd_0
- r-conquer=1.3.0=r41hcec875b_0
- r-corrplot=0.92=r41hc72bb7e_0
- r-covr=3.5.1=r41h03ef668_0
- r-cowplot=1.1.1=r41hc72bb7e_0
- r-cpp11=0.4.2=r41hc72bb7e_0
- r-crayon=1.5.1=r41hc72bb7e_0
- r-credentials=1.3.2=r41hc72bb7e_0
- r-crosstalk=1.2.0=r41hc72bb7e_0
- r-curl=4.3.2=r41hcfec24a_0
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- r-dbplyr=2.2.1=r41hc72bb7e_0
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- r-devtools=2.4.3=r41hc72bb7e_0
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- r-dplyr=1.0.9=r41h7525677_0
- r-dqrng=0.3.0=r41h03ef668_0
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- r-dtplyr=1.2.1=r41hc72bb7e_0
- r-e1071=1.7_11=r41h7525677_0
- r-ellipsis=0.3.2=r41hcfec24a_0
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- r-evaluate=0.15=r41hc72bb7e_0
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- r-farver=2.1.0=r41h03ef668_0
- r-fastmap=1.1.0=r41h03ef668_0
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- r-future=1.26.1=r41hc72bb7e_0
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- r-ids=1.0.1=r41hc72bb7e_1
- r-igraph=1.3.2=r41hb34fc8a_0
- r-ini=0.3.1=r41hc72bb7e_1003
- r-ipred=0.9_13=r41h06615bd_0
- r-irlba=2.3.5=r41he454529_0
- r-isoband=0.2.5=r41h03ef668_0
- r-iterators=1.0.14=r41hc72bb7e_0
- r-jquerylib=0.1.4=r41hc72bb7e_0
- r-jsonlite=1.8.0=r41h06615bd_0
- r-kernsmooth=2.23_20=r41h742201e_0
- r-knitr=1.39=r41hc72bb7e_0
- r-labeling=0.4.2=r41hc72bb7e_1
- r-lambda.r=1.2.4=r41hc72bb7e_1
- r-later=1.2.0=r41h03ef668_0
- r-lattice=0.20_45=r41hcfec24a_0
- r-lava=1.6.10=r41hc72bb7e_0
- r-lazyeval=0.2.2=r41hcfec24a_2
- r-lifecycle=1.0.1=r41hc72bb7e_0
- r-listenv=0.8.0=r41hc72bb7e_1
- r-littler=0.3.15=r41hcfec24a_0
- r-lme4=1.1_29=r41h7525677_0
- r-locfit=1.5_9.5=r41h06615bd_0
- r-lubridate=1.8.0=r41h03ef668_0
- r-magrittr=2.0.3=r41h06615bd_0
- r-maptools=1.1_4=r41h06615bd_0
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