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Applied Bioinformatics 2023

  1. Linux OS, Linux command lines, basic bash script and awk
  2. Basic R, statistics with R, and data visualization with R
  3. Review basic molecular biology, the human genome, gene annotation, and the other databases
  4. Basic GWAS: case/control and quantitative traits
  5. NGS and upstream analysis for DNA-seq
  6. Downstream analysis for DNA-seq
  7. Introduction to bulk RNA-seq, library types, and experiment design
  8. PolyA bulk RNA-seq analysis
  9. Long non-coding bulk RNA-seq analysis
  10. Presenting group projects