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06-excluding-PROBIT.Rmd
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06-excluding-PROBIT.Rmd
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# Primary analyses excluding the PROBIT study {#exclude-PROBIT}
---
output:
pdf_document:
keep_tex: yes
fontfamily: mathpazo
fontsize: 9pt
---
\raggedright
Only one cohort from Europe met the inclusion criteria for this study -- the PROBIT study. To assess whether inclusion of this study altered our overall study inference, we repeated analyses excluding the PROBIT cohort, as shown below in the "Overall" panels. Results were very similar with and without the PROBIT cohort. Stunting prevalence and incidence were slightly higher at birth when excluding PROBIT, but overall age-specific patterns remained the same. For this reason, we chose to retain PROBIT in the primary analyses presented in this manuscript.
```{r setup, include=FALSE}
library(knitr)
knitr::opts_chunk$set(echo = TRUE)
source(paste0(here::here(), "/0-config.R"))
```
<!-- ##################################################################################### -->
## Mean length-for-age Z-score by age
### Including PROBIT
```{r mean, echo = FALSE}
include_graphics(paste0(fig_dir, "/stunting/fig-laz-2-mean-overall_region--allage-primary.png"))
#include_graphics("figure-copies/fig-laz-2-mean-overall_region--allage-primary.png")
```
### Excluding PROBIT
```{r mean-np, echo = FALSE}
include_graphics(paste0(fig_dir, "/stunting/fig-laz-2-mean-overall_region--allage-primary_no_probit.png"))
#include_graphics("figure-copies/fig-laz-2-mean-overall_region--allage-primary_no_probit.png")
```
<!-- ##################################################################################### -->
## Age-specific prevalence
### Including PROBIT
```{r prev, echo = FALSE}
include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-prev-overall_region--allage-primary.png"))
#include_graphics("figure-copies/fig-stunt-2-prev-overall_region--allage-primary.png")
```
### Excluding PROBIT
```{r prev-np, echo = FALSE}
include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-prev-overall_region--allage-primary_no_probit.png"))
#include_graphics("figure-copies/fig-stunt-2-prev-overall_region--allage-primary_no_probit.png")
```
<!-- ##################################################################################### -->
## Age-specific incidence
### Including PROBIT
```{r inc, echo = FALSE}
include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-inc-overall_region--allage-primary.png"))
#include_graphics("figure-copies/fig-stunt-2-inc-overall_region--allage-primary.png")
```
### Excluding PROBIT
```{r inc-np, echo = FALSE}
include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-inc-overall_region--allage-primary.png"))
#include_graphics("figure-copies/fig-stunt-2-inc-overall_region--allage-primary_no_probit.png")
```