From 1371c23e6f4dd156d8fb8751c8f86422ee7e5913 Mon Sep 17 00:00:00 2001 From: Kat Holt Date: Wed, 4 Sep 2024 08:47:10 +0100 Subject: [PATCH] Update index.rst to add --trim_headers --- docs/source/index.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/index.rst b/docs/source/index.rst index 7173d9a..e63e243 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -35,7 +35,7 @@ For *K. pneumoniae* species complex, **Kleborate v3 can reproduce the outputs of .. code-block:: Python - kleborate -a *.fasta -o kleborate_results -p kpsc + kleborate -a *.fasta -o kleborate_results -p kpsc --trim_headers (Note the command has changed from Kleborate v2, the above is equivalent to running ``kleborate --all -o results.txt -a *.fasta`` with Kleborate v2 and includes all resistance and Kaptive-based typing)