pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "sisana"
authors = [
    {name = "Nolan Newman", email = "nolan.newman@ncmm.uio.no"},
]
version = "0.0.7"
description = "A command line interface tool to reconstruct and analyze single sample networks."
readme = "README.md"
requires-python = ">=3.9.0"
keywords = ["transcription-factors", "gene-regulatory-network", "panda", "lioness"]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "numpy",
    "pandas",
    "netZooPy",
    "scikit-learn",
    "scikit-survival",
    "matplotlib",
    "pathlib",
    "gseapy",
    "seaborn",
    "adjustText",
    "pyyaml",
]

[tool.setuptools.packages.find]
where = ["."] 
include = ["sisana", 
    "sisana.docs",    
    "sisana.postprocessing", 
    "sisana.preprocessing", 
    "sisana.postprocessing.post", 
    "sisana.analyze_networks",
    "sisana.analyze_networks.analyze", 
    "sisana.analyze_networks.genesets"] 
namespaces = false  # to disable scanning PEP 420 namespaces (true by default)

[project.scripts]
sisana = "sisana.sisana:cli"

[project.urls]
Repository = "https://github.com/newmanno/sisana"