do not report desc file time in 'all' when '--only_pangenome' is used

labgem · Dec 15, 2021 · 7d615f2 · 7d615f2
1 parent b66eb58
commit 7d615f2
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-1.2.61
+1.2.62
diff --git a/ppanggolin/workflow/all.py b/ppanggolin/workflow/all.py
@@ -119,7 +119,8 @@ def launch(args):
     logging.getLogger().info(f"Gathering RGP into spots took : {round(spot_time, 2)} seconds")
     logging.getLogger().info(f"Predicting modules took : {round(mod_time, 2)} seconds")
     logging.getLogger().info(f"Writing the pangenome data in HDF5 took : {round(writing_time, 2)} seconds")
-    logging.getLogger().info(f"Writing descriptive files for the pangenome took : {round(desc_time, 2)} seconds")
+    if not args.only_pangenome:
+        logging.getLogger().info(f"Writing descriptive files for the pangenome took : {round(desc_time, 2)} seconds")
     printInfo(filename, content=True)