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PPanGGOLiN 1.2.74

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@jpjarnoux jpjarnoux released this 28 Feb 15:25
· 1431 commits to master since this release

New commands

  • metrics to compute a list of metrics about the pangenome.

New features

  • The projection option from write subcommand, can give now, information about RGPs, Spots and modules
  • With the new command metrics is now possible to compute the genomic
    fluidity of the pangenome.
  • With the new command metrics is now possible to get some more information
    about the module. This information will be computed and shown as statistics on families and partitions of modules
  • All the metrics are saved in pangenome file and could be print with info
    subcommand.

Bug fixes

  • fix crazy cluster assignment in clustering step
  • fix align when using a pangenome constructed from user-provided
    annotations with prokka-like identifiers
  • fix check information on few subcommand option to help user