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metrics to compute a list of metrics about the pangenome.
New features
The projection option from write subcommand, can give now, information about RGPs, Spots and modules
With the new command metrics is now possible to compute the genomic
fluidity of the pangenome.
With the new command metrics is now possible to get some more information
about the module. This information will be computed and shown as statistics on families and partitions of modules
All the metrics are saved in pangenome file and could be print with info
subcommand.
Bug fixes
fix crazy cluster assignment in clustering step
fix align when using a pangenome constructed from user-provided
annotations with prokka-like identifiers
fix check information on few subcommand option to help user