diff --git a/doc/ebov_bdskysa.tex b/doc/ebov_bdskysa.tex index 9e772af..2cd5119 100644 --- a/doc/ebov_bdskysa.tex +++ b/doc/ebov_bdskysa.tex @@ -4,7 +4,7 @@ \section{Tree models for unstructured populations} \begin{figure}[!ht] - \includegraphics{figures/{EBOV-SUBBIG.BDSKYSA.BMT.relaxedclock.R20.SM.combined2}.pdf} + \includegraphics{figures/{EBOV-SUBBIG.BDSKYSA.BMT.relaxedclock.R20.SM.combined3}.pdf} \caption{Birth-death skyline (bdsky) analysis of the 2013--2016 West African Ebola virus disease epidemic. \textbf{(a)} The maximum clade credibility tree of the 811 sequences used in the analysis. \textbf{(b)} The median posterior estimate of the estimated effective reproductive number ($R_e$) over time is shown in orange, with the 95\% highest posterior density (HPD) interval in orange shading. The red dotted line indicates the epidemic threshold ($R_e = 1$). If $R_e$ is below this threshold the epidemic has reached a turning point and is no longer spreading. diff --git a/doc/ebov_beast2_example.pdf b/doc/ebov_beast2_example.pdf index 27b2419..5b76b77 100644 Binary files a/doc/ebov_beast2_example.pdf and b/doc/ebov_beast2_example.pdf differ