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makefile
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# Makefile for REGCOIL
#
# For NERSC Edison and Cori you must first load the cray-netcdf module and python module:
# module load cray-netcdf python
# It is convenient to run
# module unload cray-libsci
# to avoid warning messages about libsci during compiling.
LIBSTELL_DIR ?= mini_libstell
LIBSTELL_FOR_REGCOIL=$(LIBSTELL_DIR)/mini_libstell.a
#LIBSTELL_FOR_REGCOIL=$(LIBSTELL_DIR)/libstell.a
ifdef NERSC_HOST
HOSTNAME = $(NERSC_HOST)
else
HOSTNAME?="laptop"
endif
ifdef MACHINE
HOSTNAME = $(MACHINE)
endif
ifeq ($(HOSTNAME),cori)
REGCOIL_HOST = cori
FC = ftn
## NERSC documentation recommends against specifying -O3
## -mkl MUST APPEAR AT THE END!!
EXTRA_COMPILE_FLAGS = -qopenmp -mkl
EXTRA_LINK_FLAGS = -qopenmp -mkl -Wl,-ydgemm_
# Above, the link flag "-Wl,-ydgemm_" causes the linker to report which version of DGEMM (the BLAS3 matrix-matrix-multiplication subroutine) is used.
# For batch systems, set the following variable to the command used to run jobs. This variable is used by 'make test'.
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun -n 1 -c 32
else ifeq ($(HOSTNAME),marconi)
REGCOIL_HOST = marconi
FC = mpiifort
EXTRA_COMPILE_FLAGS = -qopenmp -mkl $(shell nc-config --fflags)
EXTRA_LINK_FLAGS = -qopenmp -mkl $(shell nc-config --flibs)
# Above, the link flag "-Wl,-ydgemm_" causes the linker to report which version of DGEMM (the BLAS3 matrix-matrix-multiplication subroutine) is used.
# For batch systems, set the following variable to the command used to run jobs. This variable is used by 'make test'.
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun -n 1 -c 32
LIBSTELL_DIR=~/bin/libstell_dir
LIBSTELL_FOR_REGCOIL=~/bin/libstell.a
else ifeq ($(HOSTNAME),pppl_gcc)
REGCOIL_HOST=pppl_gcc
NETCDF_F = $(NETCDF_FORTRAN_HOME)
NETCDF_C = $(NETCDF_C_HOME)
FC = mpifort
EXTRA_COMPILE_FLAGS = -O2 -ffree-line-length-none -fexternal-blas -fopenmp -I$(NETCDF_F)/include -I$(NETCDF_C)/include
EXTRA_LINK_FLAGS = -fopenmp -lopenblas -L$(NETCDF_C)/lib -lnetcdf -L$(NETCDF_F)/lib -lnetcdff
LIBSTELL_DIR=$(STELLOPT_PATH)/LIBSTELL/Release
LIBSTELL_FOR_REGCOIL=$(LIBSTELL_DIR)/libstell.a
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun -N 1 -n 1 -c 8 -q debug --mem 8G
else ifeq ($(HOSTNAME),pppl_intel)
REGCOIL_HOST=pppl_intel
FC = mpifort
NETCDF_F = $(NETCDF_FORTRAN_HOME)
NETCDF_C = $(NETCDF_C_HOME)
EXTRA_COMPILE_FLAGS =-mcmodel=large -O3 -m64 -unroll0 -fno-alias -ip -traceback \
-Wl,--end-group \
-qopenmp \
-lpthread \
-I$(NETCDF_F)/include -I$(NETCDF_C)/include \
-mkl
EXTRA_LINK_FLAGS = -qopenmp -mkl -L$(NETCDF_C)/lib -lnetcdf -L$(NETCDF_F)/lib -lnetcdff
LIBSTELL_DIR=$(STELLOPT_PATH)/LIBSTELL/Release
LIBSTELL_FOR_REGCOIL=$(LIBSTELL_DIR)/libstell.a
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun -N 1 -n 1 -c 8 -q debug --mem 8G
else ifeq ($(HOSTNAME),stellar)
REGCOIL_HOST=stellar
FC = ifort
NETCDF_F = $(NETCDFDIR)
NETCDF_C = $(NETCDFDIR)
EXTRA_COMPILE_FLAGS =-mcmodel=large -O3 -m64 -unroll0 \
-Wl,--end-group \
-lpthread \
-I$(NETCDF_F)/include -I$(NETCDF_C)/include
EXTRA_LINK_FLAGS = -fopenmp -L$(NETCDF_C)/lib -lnetcdf -L$(NETCDF_F)/lib -lnetcdff -lmkl_gf_lp64 -lmkl_core -lmkl_sequential -lhdf5_hl -lhdf5_fortran -lhdf5 -lpthread -lz -lm
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun -N 1 -n 1 -c 8 -q debug --mem 8G
LIBSTELL_FOR_REGCOIL=$(LIBSTELL_DIR)/mini_libstell.a
else ifeq ($(HOSTNAME),osx_brew)
REGCOIL_HOST=osx_brew
NETCDF_HOME ?= /usr/local/lib/netcdf
LAPACK_HOME ?= /usr/local/lib/lapack
FC = mpifort
EXTRA_COMPILE_FLAGS = -O2 -ffree-line-length-none -fopenmp -I$(NETCDF_HOME)/include
EXTRA_LINK_FLAGS = -fopenmp -L$(NETCDF_HOME)/lib -lnetcdf -lnetcdff -L$(LAPACK_HOME)/lib -lblas -llapack
LIBSTELL_DIR = $(STELLOPT_PATH)/LIBSTELL/Release
LIBSTELL_FOR_REGCOIL = $(LIBSTELL_DIR)/libstell.a
REGCOIL_COMMAND_TO_SUBMIT_JOB =
else ifeq ($(CLUSTER),DRACO)
REGCOIL_HOST=draco
FC = mpiifort
#EXTRA_COMPILE_FLAGS = -qopenmp -mkl -I${NETCDF_HOME}/include
#EXTRA_LINK_FLAGS = -qopenmp -mkl -Wl,-ydgemm_ -L${NETCDF_HOME}/lib -lnetcdf -lnetcdff
EXTRA_COMPILE_FLAGS = -qopenmp -I${MKLROOT}/include -I${NETCDF_HOME}/include
EXTRA_LINK_FLAGS = -qopenmp -Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_lp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a ${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl -Wl,-ydgemm_ -L${NETCDF_HOME}/lib -lnetcdf -lnetcdff
# For batch systems, set the following variable to the command used to run jobs. This variable is used by 'make test'.
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun
else ifeq ($(CLUSTER),RAVEN)
REGCOIL_HOST=raven
FC = mpiifort
EXTRA_COMPILE_FLAGS = -qopenmp -I${MKLROOT}/include $(shell nc-config --fflags)
EXTRA_LINK_FLAGS = -qopenmp -Wl,--start-group ${MKLROOT}/lib/intel64/libmkl_intel_lp64.a ${MKLROOT}/lib/intel64/libmkl_intel_thread.a ${MKLROOT}/lib/intel64/libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl -Wl,-ydgemm_ $(shell nc-config --flibs)
# For batch systems, set the following variable to the command used to run jobs. This variable is used by 'make test'.
REGCOIL_COMMAND_TO_SUBMIT_JOB = srun
else ifeq ($(CLUSTER),lazerson)
REGCOIL_HOST=macports
FC = mpif90
NETCDF_INC = $(shell nc-config --fflags)
NETCDF_LIB = $(shell nc-config --flibs)
EXTRA_COMPILE_FLAGS = -O2 -fexternal-blas -fopenmp -fallow-argument-mismatch -ffree-line-length-none $(NETCDF_INC)
EXTRA_LINK_FLAGS = -fopenmp -L/opt/local/lib -lopenblas $(NETCDF_LIB)
LIBSTELL_DIR = /Users/lazerson/bin/libstell_dir
LIBSTELL_FOR_REGCOIL = /Users/lazerson/bin/libstell.a
else
REGCOIL_HOST=macports
FC = mpif90
#EXTRA_COMPILE_FLAGS = -fopenmp -I/opt/local/include -ffree-line-length-none -cpp
#EXTRA_COMPILE_FLAGS = -fopenmp -I/opt/local/include -ffree-line-length-none -O0 -g
#EXTRA_LINK_FLAGS = -fopenmp -L/opt/local/lib -lnetcdff -lnetcdf -framework Accelerate
EXTRA_COMPILE_FLAGS = -fopenmp -I/usr/local/include -ffree-line-length-none -O0 -g -fallow-argument-mismatch
EXTRA_LINK_FLAGS = -fopenmp -L/usr/local/lib -lnetcdff -lnetcdf -framework Accelerate
# For batch systems, set the following variable to the command used to run jobs. This variable is used by 'make test'.
REGCOIL_COMMAND_TO_SUBMIT_JOB =
endif
# End of system-dependent variable assignments
TARGET = regcoil
export
.PHONY: all clean
all: $(TARGET)
include makefile.depend
%.o: %.f90 ${LIBSTELL_FOR_REGCOIL}
$(FC) $(EXTRA_COMPILE_FLAGS) -I $(LIBSTELL_DIR) -c $<
%.o: %.f ${LIBSTELL_FOR_REGCOIL}
$(FC) $(EXTRA_COMPILE_FLAGS) -I $(LIBSTELL_DIR) -c $<
lib$(TARGET).a: $(OBJ_FILES)
ar rcs lib$(TARGET).a $(OBJ_FILES)
$(TARGET): lib$(TARGET).a $(TARGET).o $(LIBSTELL_FOR_REGCOIL)
$(FC) -o $(TARGET) $(TARGET).o lib$(TARGET).a $(LIBSTELL_FOR_REGCOIL) $(EXTRA_LINK_FLAGS)
# $(FC) -o $(TARGET) $(OBJ_FILES) $(LIBSTELL_DIR)/libstell.a $(EXTRA_LINK_FLAGS)
mini_libstell/mini_libstell.a:
$(MAKE) -C mini_libstell
clean:
rm -f *.o *.mod *.MOD *~ $(TARGET) *.a
cd mini_libstell; rm -f *.o *.mod *.MOD *.a
test: $(TARGET)
@echo "Beginning functional tests." && cd examples && export REGCOIL_RETEST=no && ./runExamples.py
retest: $(TARGET)
@echo "Testing existing output files for examples without re-running then." && cd examples && export REGCOIL_RETEST=yes && ./runExamples.py
test_make:
@echo REGCOIL_HOST is $(REGCOIL_HOST)
@echo HOSTNAME is $(HOSTNAME)
@echo MACHINE is $(MACHINE)
@echo FC is $(FC)
@echo LIBSTELL_DIR is $(LIBSTELL_DIR)
@echo LIBSTELL_FOR_REGCOIL is $(LIBSTELL_FOR_REGCOIL)
@echo EXTRA_COMPILE_FLAGS is $(EXTRA_COMPILE_FLAGS)
@echo EXTRA_LINK_FLAGS is $(EXTRA_LINK_FLAGS)