DESCRIPTION

Package: FlowSorted.Blood.EPIC
Type: Package
Title: Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells
Version: 1.5.5
Date: 2020-14-04
Authors@R: c( person(c("Lucas", "A."), "Salas", role = c("cre", "aut"),
            email = "lucas.a.salas.diaz@dartmouth.edu"),
            person(c("Devin", "C."), "Koestler", role = c("aut"),
            email = "dkoestler@kumc.edu"),
            person(c("Rondi", "A."), "Butler", role = c("ctb")),
            person(c("Helen", "M."), "Hansen", role = c("ctb")),
            person(c("John", "K."), "Wiencke", role = c("ctb")),
            person(c("Karl", "T."), "Kelsey", role = c("ctb")),
            person(c("Brock", "C."), "Christensen", role = c("ctb")),
            person(c("Kasper", "Daniel"), "Hansen", role = c("ctb"),
            comment = "author and maintainer of the original minfi estimateCellCounts and internal functions"),
            person("Jean-Philippe", "Fortin", role = "ctb", 
            comment = "contributor in the original minfi estimateCellCounts and internal functions"),
            person(c("Shan", "V."), "Andrews", role = "ctb",
            comment = "contributor in the original minfi estimateCellCounts and internal functions"),
            person(c("E.", "Andres"), "Houseman", role = c("ctb"),
            comment = "author of the original quadratic programming function used for cell projection"),
            person(c("Andrew", "E"), "Jaffe", role = c("ctb"),
            comment = "author of the original estimateCellCounts and internal functions within minfi"))
Description: Raw data objects to be used for blood cell proportion
        estimation in minfi and similar packages. 
        The FlowSorted.Blood.EPIC object is based in samples assayed
        by Brock Christensen and colleagues; for details see Salas et al. 2018.
        https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.
License: GPL-3
Depends: R (>= 3.5), minfi (>= 1.21.2), SummarizedExperiment, genefilter, 
         quadprog, nlme, S4Vectors,  graphics, stats, utils,
         IlluminaHumanMethylationEPICanno.ilm10b4.hg19, ExperimentHub
biocViews: ExperimentData, Homo_sapiens_Data, Tissue, MicroarrayData, Genome,
        TissueMicroarrayData, MethylationArrayData
NeedsCompilation: no
LazyData: yes
Packaged: 2017-10-31 16:43:10 UTC; biocbuild
Suggests: knitr,
    rmarkdown, EpiDISH, FlowSorted.CordBloodCombined.450k,
    FlowSorted.Blood.450k(>= 1.0.1), FlowSorted.CordBlood.450k, 
    FlowSorted.CordBloodNorway.450k,
    testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), 
    IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), 
    IlluminaHumanMethylationEPICanno.ilm10b2.hg19
VignetteBuilder: knitr
RoxygenNote: 7.0.2
URL: https://github.com/immunomethylomics/FlowSorted.Blood.EPIC
BugReports: https://github.com/immunomethylomics/FlowSorted.Blood.EPIC/issues.