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larmarange committed Jun 25, 2021
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7,175 changes: 2,824 additions & 4,351 deletions analyse-R.html
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<title>Analyse de réseaux</title>

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4 changes: 2 additions & 2 deletions analyse-de-sequences.html
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<title>Analyse de séquences</title>

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Expand Down Expand Up @@ -485,7 +485,7 @@ <h1 class="title toc-ignore">Analyse de séquences</h1>

<div class="webin-R">
<p>Ce chapitre est évoqué dans le webin-R #16 (analyse de séquences) sur <a href="https://youtu.be/qCEougRU-bA">YouTube</a>.</p>
<p>Ce chapitre est évoqué dans le webin-R #17 (trajectoires de soins : un exemple de données longitudinales) sur <a href="https://youtu.be/JV1Srrg09oI">YouTube</a>.</p>
<p>Ce chapitre est évoqué dans le webin-R #19 (trajectoires de soins : un exemple de données longitudinales 3 : analyse de séquences) sur <a href="https://youtu.be/YgoSNYdfTyg">YouTube</a>.</p>
</div>
<div class="note">
<p>La version originale de ce chapitre est une reprise, avec l’aimable autorisation de son auteur, d’un article de Nicolas Robette intitulé <em>L’analyse de séquences : une introduction avec le logiciel R et le package TraMineR</em> et publié sur le blog Quanti (<a href="http://quanti.hypotheses.org/686/" class="uri">http://quanti.hypotheses.org/686/</a>).</p>
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<title>Analyse des correspondances multiples (ACM)</title>

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<title>Analyse spatiale</title>

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<title>Annotations mathématiques</title>

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<title>Calculer un âge</title>

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<title>Cartes</title>

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<title>Classification ascendante hiérarchique (CAH)</title>

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<title>Combiner plusieurs graphiques</title>

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<title>Comparaisons (moyennes et proportions)</title>

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<title>Conditions et comparaisons</title>

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<title>Les contrastes (codage des variables catégorielles dans un modèle)</title>

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<title>Couleurs et Palettes</title>

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<title>Définir un plan d’échantillonnage complexe</title>

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<title>Diagramme de Lexis</title>

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<title>Données pondérées</title>

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<title>Écrire ses propres fonctions</title>

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<title>Effets d’interaction dans un modèle</title>

<script src="libs/header-attrs-2.7/header-attrs.js"></script>
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Expand Up @@ -704,10 +704,7 @@ <h3>Graphique en mosaïque (<em>mosaic plot</em>)</h3>
<div id="représentations-graphiques-des-distributions-et-de-lincertitude" class="section level3">
<h3>Représentations graphiques des distributions et de l’incertitude</h3>
<p>L’extension <code class="pkg">ggdist</code> propose plusieurs géométries permettant de représenter l’incertitude autour de certaines mesures.</p>
<div class="figure">
<img src="images/ggdist_preview.png" alt="" />
<p class="caption">Aperçu de ggdist</p>
</div>
<p><img src="images/ggdist_preview.png" /></p>
</div>
<div id="graphique-de-pirates-alternative-aux-boîtes-à-moustache-pirat-plot" class="section level3">
<h3>Graphique de pirates : alternative aux boîtes à moustache (<em>pirat plot</em>)</h3>
Expand All @@ -723,10 +720,7 @@ <h3>Graphique de pirates : alternative aux boîtes à moustache (<em>pirat plot<
<div id="nuages-de-pluie-raincloud-plots" class="section level3">
<h3>Nuages de pluie (<em>raincloud plots</em>)</h3>
<p>Il existe encore d’autres approches graphiques pour mieux rendre compte visuellement différentes distrubutions comme les <dfn lang="en">raincloud plots</dfn>. Pour en savoir plus, on pourra se référer à un <a href="https://www.cedricscherer.com/2021/06/06/visualizing-distributions-with-raincloud-plots-with-ggplot2/">billet de blog en anglais de Cédric Scherer</a> ou encore à l’extension <code class="pkg">raincloudplots</code>.</p>
<div class="figure">
<img src="images/raincloud_plot_example.png" alt="" />
<p class="caption">Exemple de graphique raincloud</p>
</div>
<p><img src="images/raincloud_plot_example.png" /></p>
</div>
<div id="demi-géométries" class="section level3">
<h3>Demi-géométries</h3>
Expand Down Expand Up @@ -924,10 +918,7 @@ <h3>Pyramides des âges</h3>
<span id="cb32-3"><a href="#cb32-3" aria-hidden="true" tabindex="-1"></a><span class="fu">age_pyramid</span>(us_2018, <span class="at">age_group =</span> age, <span class="at">split_by =</span> gender, <span class="at">count =</span> count)</span></code></pre></div>
<p><img src="graphs/etendre-ggplot2/unnamed-chunk-24-1.png" width="1050" /></p>
<p>Pour aller plus loin, notamment avec <code class="pkg">ggplot2</code>, on pourra se référer (en anglais), au <a href="https://epirhandbook.com/demographic-pyramids-and-likert-scales.html">chapitre dédié du <em>Epidemiologist R Handbook</em></a>, par exemple pour savoir comme réaliser deux pyramides superposées :</p>
<div class="figure">
<img src="images/exemple_pyramide_age_avancee.png" alt="" />
<p class="caption">exemple de pyramide des âges avancée</p>
</div>
<p><img src="images/exemple_pyramide_age_avancee.png" /></p>
</div>
<div id="graphiques-interactifs" class="section level3">
<h3>Graphiques interactifs</h3>
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<title>Exemples de graphiques avancés</title>

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<title>Export de données</title>

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<title>Export de graphiques</title>

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<title>Expressions régulières</title>

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<title>Extensions (installation, mise à jour)</title>

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<title>Facteurs et vecteurs labellisés</title>

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<title>Fonctions à fenêtre</title>

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<title>Mettre en forme des nombres</title>

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<title>Formules</title>

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<script src="libs/jquery-1.11.3/jquery.min.js"></script>
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<title>Fusion de tables</title>

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<script src="libs/jquery-1.11.3/jquery.min.js"></script>
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<title>Gestion des dates</title>

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<script src="libs/jquery-1.11.3/jquery.min.js"></script>
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<title>ggplot2 et la grammaire des graphiques</title>

<script src="libs/header-attrs-2.7/header-attrs.js"></script>
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<script src="libs/jquery-1.11.3/jquery.min.js"></script>
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<title>Graphiques univariés et bivariés avec ggplot2</title>

<script src="libs/header-attrs-2.7/header-attrs.js"></script>
<script src="libs/header-attrs-2.9/header-attrs.js"></script>
<script src="libs/jquery-1.11.3/jquery.min.js"></script>
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Expand Down Expand Up @@ -690,6 +690,13 @@ <h2>Boîtes à moustaches (et représentations associées)</h2>
Graphiques de <q>pirates</q> ou <em lang="en">pirateplot</em>
</figcaption>
</figure>
<div class="note">
<p>Il existe encore d’autres approches graphiques pour mieux rendre compte visuellement différentes distrubutions comme les <dfn lang="en">raincloud plots</dfn>. Pour en savoir plus, on pourra se référer à un <a href="https://www.cedricscherer.com/2021/06/06/visualizing-distributions-with-raincloud-plots-with-ggplot2/">billet de blog en anglais de Cédric Scherer</a> ou encore à l’extension <code class="pkg">raincloudplots</code>.</p>
<div class="figure">
<img src="images/raincloud_plot_example.png" alt="" />
<p class="caption">Exemple de graphique raincloud</p>
</div>
</div>
</div>
<div id="diagramme-en-bâtons" class="section level2">
<h2>Diagramme en bâtons</h2>
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<title>Graphiques de données pondéres</title>

<script src="libs/header-attrs-2.7/header-attrs.js"></script>
<script src="libs/header-attrs-2.9/header-attrs.js"></script>
<script src="libs/jquery-1.11.3/jquery.min.js"></script>
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2 changes: 1 addition & 1 deletion graphiques-interactifs.html
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<title>Graphiques interactifs</title>

<script src="libs/header-attrs-2.7/header-attrs.js"></script>
<script src="libs/header-attrs-2.9/header-attrs.js"></script>
<script src="libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="libs/bootstrap-3.3.5/css/paper.min.css" rel="stylesheet" />
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2 changes: 1 addition & 1 deletion import-de-donnees.html
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<title>Import de données</title>

<script src="libs/header-attrs-2.7/header-attrs.js"></script>
<script src="libs/header-attrs-2.9/header-attrs.js"></script>
<script src="libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="libs/bootstrap-3.3.5/css/paper.min.css" rel="stylesheet" />
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