From de9e792b68ee9438227a77bd43dcf9d85a1f6d12 Mon Sep 17 00:00:00 2001
From: Lucas Czech <luc.czech@gmail.com>
Date: Sun, 15 Sep 2024 17:40:01 +0200
Subject: [PATCH] Add script to rename release binaries

---
 tools/deploy/rename_binaries.sh | 120 ++++++++++++++++++++++++++++++++
 1 file changed, 120 insertions(+)
 create mode 100755 tools/deploy/rename_binaries.sh

diff --git a/tools/deploy/rename_binaries.sh b/tools/deploy/rename_binaries.sh
new file mode 100755
index 0000000..37c0978
--- /dev/null
+++ b/tools/deploy/rename_binaries.sh
@@ -0,0 +1,120 @@
+#!/bin/bash
+
+# grenedalf - Genome Analyses of Differential Allele Frequencies
+# Copyright (C) 2020-2024 Lucas Czech
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+# Contact:
+# Lucas Czech <lucas.czech@sund.ku.dk>
+# University of Copenhagen, Globe Institute, Section for GeoGenetics
+# Oster Voldgade 5-7, 1350 Copenhagen K, Denmark
+
+####################################################################################################
+#    This script renames the binaries from the GitHub Actions CI runs,
+#    so that we can use them directly for the release page.
+####################################################################################################
+
+# Function to extract version from the Ubuntu binary
+get_version_from_ubuntu_binary() {
+  local zipfile="binary-ubuntu-latest-gcc.zip"
+  local extracted_dir=$(mktemp -d)
+
+  # Extract the zip file
+  unzip -q "$zipfile" -d "$extracted_dir"
+
+  # Assume the binary is called grenedalf after extraction
+  local binary="$extracted_dir/grenedalf"
+
+  if [[ ! -f "$binary" ]]; then
+    echo "Binary grenedalf not found in $zipfile"
+    return 1
+  fi
+
+  # Make the binary executable
+  chmod +x "$binary"
+
+  # Get version from the Ubuntu binary
+  version=$($binary --version)
+
+  # Clean up extracted directory
+  rm -rf "$extracted_dir"
+
+  echo "$version"
+}
+
+# Function to process and rename the macOS binaries using the Ubuntu version
+process_binary() {
+  local zipfile=$1
+  local version=$2
+  local extracted_dir=$(mktemp -d)
+
+  # Extract the zip file
+  unzip -q "$zipfile" -d "$extracted_dir"
+
+  # Assume the binary is called grenedalf after extraction
+  local binary="$extracted_dir/grenedalf"
+
+  if [[ ! -f "$binary" ]]; then
+    echo "Binary grenedalf not found in $zipfile"
+    return 1
+  fi
+
+  # Make the binary executable
+  chmod +x "$binary"
+
+  # Construct new file name
+  if [[ $zipfile == *"macos"* ]]; then
+    os_version=$(echo "$zipfile" | grep -oP 'macos-\K[0-9]+')
+    new_name="grenedalf_${version}_macos_${os_version}"
+  elif [[ $zipfile == *"ubuntu"* ]]; then
+    new_name="grenedalf_${version}_linux_x86_64"
+  else
+    echo "Unknown OS in $zipfile"
+    return 1
+  fi
+
+  # Rename the binary
+  mv "$binary" "$new_name"
+
+  # Clean up extracted directory
+  rm -rf "$extracted_dir"
+
+  echo "Renamed to: $new_name"
+}
+
+# Step 1: Get version from the Ubuntu binary
+version=$(get_version_from_ubuntu_binary)
+if [[ -z "$version" ]]; then
+  echo "Failed to extract version from Ubuntu binary."
+  exit 1
+fi
+
+echo "Version extracted: $version"
+
+# Step 2: Process all zip files using the extracted version
+zipfiles=(
+  "binary-macos-12-apple.zip"
+  "binary-macos-13-apple.zip"
+  "binary-macos-14-apple.zip"
+  "binary-ubuntu-latest-gcc.zip"
+)
+
+for zipfile in "${zipfiles[@]}"; do
+  if [[ -f "$zipfile" ]]; then
+    process_binary "$zipfile" "$version"
+  else
+    echo "$zipfile not found!"
+  fi
+done