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21 Open 11 Closed
21 Open 11 Closed
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Issues list

Bug/question with --force-all-parents --clades all
#35 opened Dec 1, 2022 by MarieLataretu
3
Bridging the gap between sc2rf result and Pangolin X* lineages
#34 opened Jul 14, 2022 by bioinforME
How to interpret BA.4/BA.5 list of mutations
#32 opened May 25, 2022 by jpflorido
GISAID XT recombinant not detected by sc2rf
#31 opened May 16, 2022 by BenjaminDelisle
4
Option to ignore shared substitutions
#30 opened May 6, 2022 by ktmeaton
Terminal Ns not recognized as missing
#29 opened May 6, 2022 by ktmeaton
1
ENH: Sort by breakpoint
#26 opened Apr 3, 2022 by corneliusroemer
ENH: Accept MAPLE file as alternative to fasta
#24 opened Apr 1, 2022 by corneliusroemer
ENH: Output full internal representation of analysis result for sharing without need for recomputation
#22 opened Mar 31, 2022 by corneliusroemer
2
Have a look at the Δm, n, 2 statistic for breakpoint detection
#21 opened Mar 26, 2022 by lenaschimmel
Add relevant primer bed files and make sure the bed format is correctly interpreted
#20 opened Mar 26, 2022 by lenaschimmel
ENH: repeat gene legend every say 30 samples in case of long list
#18 opened Mar 24, 2022 by corneliusroemer
2
ENH: add spaces between genes rather than every 5 mutations
#17 opened Mar 24, 2022 by corneliusroemer
1
ENH: Differentiate between clade defining mutations and optional mutations
#15 opened Mar 23, 2022 by corneliusroemer
3
ENH: Allow tool to run in a web browser
#13 opened Mar 22, 2022 by corneliusroemer
4
Allow more file formats and/or access methods, i.e. Auspice v2 dataset JSON from nextstrain URLs
#12 opened Mar 22, 2022 by lenaschimmel
Write documentation on how to interpret the output
#11 opened Mar 22, 2022 by lenaschimmel
Fix or remove 21I and 21J
#10 opened Mar 22, 2022 by lenaschimmel
11
Deltacrons with NSP3 breakpoint
#8 opened Mar 17, 2022 by ktmeaton
17
Release a version
#5 opened Mar 15, 2022 by erinyoung
5
Issues with VT / ANSI color codes, especially on Windows/Ubuntu
#2 opened Mar 14, 2022 by lenaschimmel
5 of 8 tasks
1
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