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Package Build - check() #37

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leppott opened this issue Sep 26, 2017 · 8 comments
Open

Package Build - check() #37

leppott opened this issue Sep 26, 2017 · 8 comments

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@leppott
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leppott commented Sep 26, 2017

Fails on vignette creation. Needs temp data.

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@leppott
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leppott commented Sep 26, 2017

==> devtools::check()

Updating ContDataQC documentation
Loading ContDataQC
Loading required package: dataRetrieval
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

as.Date, as.Date.numeric

Loading required package: knitr
Loading required package: survival
Loading required package: doBy
Loading required package: rmarkdown
Setting env vars --------------------------------------------------------------
CFLAGS : -Wall -pedantic
CXXFLAGS: -Wall -pedantic
Building ContDataQC -----------------------------------------------------------
"C:/Programs/R/R-34~1.1/bin/i386/R" --no-site-file --no-environ --no-save
--no-restore --quiet CMD build "C:\Users\Erik.Leppo\OneDrive - Tetra Tech,
Inc\MyDocs_OneDrive\GitHub\ContDataQC" --no-resave-data --no-manual

  • checking for file 'C:\Users\Erik.Leppo\OneDrive - Tetra Tech, Inc\MyDocs_OneDrive\GitHub\ContDataQC/DESCRIPTION' ... OK
  • preparing 'ContDataQC':
  • checking DESCRIPTION meta-information ... OK
  • checking for LF line-endings in source and make files
  • checking for empty or unneeded directories
    Removed empty directory 'ContDataQC/vignettes'
  • looking to see if a 'data/datalist' file should be added
  • building 'ContDataQC_2.0.1.9042.tar.gz'

Setting env vars --------------------------------------------------------------
R_CHECK_CRAN_INCOMING : FALSE
R_CHECK_FORCE_SUGGESTS: FALSE
Checking ContDataQC -----------------------------------------------------------
"C:/Programs/R/R-341.1/bin/i386/R" --no-site-file --no-environ --no-save
--no-restore --quiet CMD check
"C:\Users\ERIK
1.LEP\AppData\Local\Temp\RtmpYra4XQ/ContDataQC_2.0.1.9042.tar.gz"
--as-cran --timings --no-manual

  • using log directory 'C:/Users/Erik.Leppo/OneDrive - Tetra Tech, Inc/MyDocs_OneDrive/GitHub/ContDataQC.Rcheck'
  • using R version 3.4.1 (2017-06-30)
  • using platform: i386-w64-mingw32 (32-bit)
  • using session charset: ISO8859-1
  • using options '--no-manual --as-cran'
  • checking for file 'ContDataQC/DESCRIPTION' ... OK
  • this is package 'ContDataQC' version '2.0.1.9042'
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE
    Depends: includes the non-default packages:
    'dataRetrieval' 'zoo' 'knitr' 'survival' 'doBy' 'rmarkdown'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... WARNING
    Found the following files with non-portable file names:
    inst/rmd/Report_Aggregate - html.rmd
    inst/rmd/Report_Aggregate - word.rmd
    inst/rmd/Report_PeriodStats - word.rmd
    inst/rmd/Report_QC - html.rmd
    inst/rmd/Report_QC - word.rmd
    inst/rmd/Report_Stats - html.rmd
    inst/rmd/Report_Stats - word.rmd
    These are not fully portable file names.
    See section 'Package structure' in the 'Writing R Extensions' manual.
  • checking whether package 'ContDataQC' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... NOTE
    Packages listed in more than one of Depends, Imports, Suggests, Enhances:
    'knitr' 'rmarkdown'
    A package should be listed in only one of these fields.
  • checking top-level files ... NOTE
    File
    LICENSE
    is not mentioned in the DESCRIPTION file.
    Non-standard files/directories found at top level:
    'CompSiteCDF_20170922_115723.pdf' 'data-raw'
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking dependencies in R code ... NOTE
    Packages in Depends field not imported from:
    'dataRetrieval' 'doBy' 'knitr' 'rmarkdown' 'survival' 'zoo'
    These packages need to be imported from (in the NAMESPACE file)
    for when this namespace is loaded but not attached.
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    CompSiteCDF: no visible global function definition for 'read.csv'
    CompSiteCDF: no visible global function definition for 'View'
    CompSiteCDF: no visible global function definition for 'ecdf'
    CompSiteCDF: no visible global function definition for 'plot'
    CompSiteCDF: no visible global function definition for 'pdf'
    CompSiteCDF: no visible global function definition for 'par'
    CompSiteCDF: no visible global function definition for 'hist'
    CompSiteCDF: no visible global function definition for 'box'
    CompSiteCDF: no visible global function definition for 'lines'
    CompSiteCDF: no visible global function definition for 'density'
    CompSiteCDF: no visible global function definition for 'legend'
    CompSiteCDF: no visible global function definition for 'dev.off'
    CompSiteCDF: no visible global function definition for 'flush.console'
    Export.IHA: no visible global function definition for 'read.csv'
    Export.IHA: no visible binding for global variable 'myFile'
    Export.IHA: no visible global function definition for 'aggregate'
    Export.IHA: no visible global function definition for 'write.csv'
    Export.StreamThermal: no visible global function definition for
    'aggregate'
    PeriodStats: no visible global function definition for 'read.csv'
    PeriodStats : myFUN.sumBy: no visible global function definition for
    'median'
    PeriodStats : myFUN.sumBy: no visible global function definition for
    'sd'
    PeriodStats : myFUN.sumBy: no visible global function definition for
    'var'
    PeriodStats : myFUN.sumBy: no visible global function definition for
    'quantile'
    PeriodStats: no visible global function definition for 'write.csv'
    PeriodStats: no visible global function definition for 'flush.console'
    fun.AggregateData: no visible global function definition for 'head'
    fun.AggregateData: no visible global function definition for
    'flush.console'
    fun.AggregateData: no visible global function definition for 'read.csv'
    fun.AggregateData: no visible global function definition for
    'write.csv'
    fun.AggregateData : fun.merge: no visible global function definition
    for 'read.csv'
    fun.AggregateData : fun.merge: no visible binding for global variable
    'myName.DateTime'
    fun.AggregateData : fun.merge: no visible binding for global variable
    'myFormat.Time'
    fun.AggregateData : fun.merge: no visible binding for global variable
    'myName.Date'
    fun.AggregateData : fun.merge: no visible binding for global variable
    'myDelim'
    fun.AggregateData : fun.merge: no visible global function definition
    for 'write.csv'
    fun.AggregateData : fun.merge: no visible global function definition
    for 'flush.console'
    fun.AggregateData.File: no visible global function definition for
    'head'
    fun.AggregateData.File: no visible global function definition for
    'flush.console'
    fun.AggregateData.File: no visible global function definition for
    'read.csv'
    fun.AggregateData.File: no visible global function definition for
    'write.csv'
    fun.CalcQCStats: no visible global function definition for 'na.omit'
    fun.CalcQCStats: no visible global function definition for 'median'
    fun.CalcQCStats: no visible binding for global variable 'sd'
    fun.DateTimeFormat: no visible global function definition for 'na.omit'
    fun.DateTimeFormat: no visible global function definition for 'head'
    fun.GageData: no visible global function definition for 'flush.console'
    fun.GageData: no visible global function definition for 'write.csv'
    fun.OffsetCollectionCheck: no visible global function definition for
    'na.omit'
    fun.QC: no visible global function definition for 'head'
    fun.QC: no visible global function definition for 'flush.console'
    fun.QC: no visible global function definition for 'read.csv'
    fun.QC: no visible global function definition for 'na.omit'
    fun.QC: no visible global function definition for 'write.csv'
    fun.QC.File: no visible global function definition for 'head'
    fun.QC.File: no visible global function definition for 'flush.console'
    fun.QC.File: no visible global function definition for 'read.csv'
    fun.QC.File: no visible global function definition for 'na.omit'
    fun.QC.File: no visible global function definition for 'write.csv'
    fun.QC.datetime: no visible global function definition for 'na.omit'
    fun.Report: no visible global function definition for 'flush.console'
    fun.Report: no visible global function definition for 'read.csv'
    fun.Report: no visible binding for global variable 'data.plot'
    fun.Report.File: no visible global function definition for
    'flush.console'
    fun.Report.File: no visible binding for global variable 'intCounter'
    fun.Report.File: no visible binding for global variable
    'intItems.Total'
    fun.Report.File: no visible global function definition for 'read.csv'
    fun.Stats: no visible global function definition for 'flush.console'
    fun.Stats: no visible global function definition for 'read.csv'
    fun.Stats: no visible global function definition for 'write.csv'
    fun.Stats : myFUN.sumBy: no visible global function definition for
    'median'
    fun.Stats : myFUN.sumBy: no visible global function definition for 'sd'
    fun.Stats : myFUN.sumBy: no visible global function definition for
    'var'
    fun.Stats : myFUN.sumBy: no visible global function definition for
    'quantile'
    fun.Stats: no visible global function definition for 'pdf'
    fun.Stats: no visible global function definition for 'plot'
    fun.Stats: no visible global function definition for 'lines'
    fun.Stats: no visible global function definition for 'polygon'
    fun.Stats: no visible global function definition for 'axis'
    fun.Stats: no visible global function definition for 'dev.off'
    fun.Stats.File: no visible global function definition for 'head'
    fun.Stats.File: no visible global function definition for
    'flush.console'
    fun.Stats.File: no visible global function definition for 'read.csv'
    fun.Stats.File: no visible global function definition for 'write.csv'
    fun.Stats.File : myFUN.sumBy: no visible global function definition for
    'median'
    fun.Stats.File : myFUN.sumBy: no visible global function definition for
    'sd'
    fun.Stats.File : myFUN.sumBy: no visible global function definition for
    'var'
    fun.Stats.File : myFUN.sumBy: no visible global function definition for
    'quantile'
    fun.Stats.File: no visible global function definition for 'pdf'
    fun.Stats.File: no visible global function definition for 'plot'
    fun.Stats.File: no visible global function definition for 'lines'
    fun.Stats.File: no visible global function definition for 'polygon'
    fun.Stats.File: no visible global function definition for 'axis'
    fun.Stats.File: no visible global function definition for 'dev.off'
    fun.write.log: no visible global function definition for 'write.table'
    rarify: no visible global function definition for 'flush.console'
    rarify: no visible global function definition for 'runif'
    Undefined global functions or variables:
    View aggregate axis box data.plot density dev.off ecdf flush.console
    head hist intCounter intItems.Total legend lines median myDelim
    myFile myFormat.Time myName.Date myName.DateTime na.omit par pdf plot
    polygon quantile read.csv runif sd var write.csv write.table
    Consider adding
    importFrom("grDevices", "dev.off", "pdf")
    importFrom("graphics", "axis", "box", "hist", "legend", "lines", "par",
    "plot", "polygon")
    importFrom("stats", "aggregate", "density", "ecdf", "median",
    "na.omit", "quantile", "runif", "sd", "var")
    importFrom("utils", "View", "flush.console", "head", "read.csv",
    "write.csv", "write.table")
    to your NAMESPACE file.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd line widths ... NOTE
    Rd file 'CompSiteCDF.Rd':
    \examples lines wider than 100 characters:
    bugs.mysize <- rarify(inbug=DF.biodata, sample.ID="SampRep",abund="Count",subsiz=mySize, mySeed=Seed.MS)

Rd file 'ContDataQC.Rd':
\examples lines wider than 100 characters:
file.copy(file.path(path.package("ContDataQC"),"extdata",myFile),file.path(getwd(),Selection.SUB[1],myFile))
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export)
myConfig <- file.path(getwd(),Selection.SUB[1],"config.TZ.central.R") # include path if not in working directory
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export, myCo ... [TRUNCATED]
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export)
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export)
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export)
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export)
myFile <- c("test2_AW_20130426_20130725.csv", "test2_AW_20130725_20131015.csv", "test2_AW_20140901_20140930.csv")
ContDataQC(myData.Operation, fun.myDir.import=myDir.import, fun.myDir.export=myDir.export, fun.myFile=myFile)
myFile <- c("QC_test2_AW_20130426_20130725.csv", "QC_test2_AW_20130725_20131015.csv", "QC_test2_AW_20140901_20140930.csv")
ContDataQC(myData.Operation, fun.myDir.import=myDir.import, fun.myDir.export=myDir.export, fun.myFile=myFile)
#myFile <- c("QC_test2_AW_20130426_20130725.csv", "QC_test2_AW_20130725_20131015.csv", "QC_test2_AW_20140901_20140930.csv")
ContDataQC(myData.Operation, fun.myDir.import=myDir.import, fun.myDir.export=myDir.export, fun.myFile=myFile)

Rd file 'Export.IHA.Rd':
\examples lines wider than 100 characters:
Notes.Names <- c("Dataset (SiteID)","IHA.Year","Analysis.Date (YYYYMMDD)","Analysis.Time (HHMMSS)","Analysis.User")

Rd file 'Export.StreamThermal.Rd':
\examples lines wider than 100 characters:
ExUSGSStreamTemp<-readNWISdv("01382310","00010","2011-01-01","2011-12-31",c("00001","00002","00003"))
sitedata<-subset(ExUSGSStreamTemp, select=c("site_no","Date","X_00010_00001","X_00010_00002","X_00010_00003"))

Rd file 'fun.AggregateData.File.Rd':
\examples lines wider than 100 characters:
myFile <- c("QC_test2_AW_20130426_20130725.csv", "QC_test2_AW_20130725_20131015.csv", "QC_test2_AW_20140901_20140930.csv")

Rd file 'fun.QC.File.Rd':
\examples lines wider than 100 characters:
#myFile <- c("test2_AW_20130426_20130725.csv", "test2_AW_20130725_20131015.csv", "test2_AW_20140901_20140930.csv")

Rd file 'fun.Stats.File.Rd':
\examples lines wider than 100 characters:
#myFile <- c("QC_test2_Aw_20130426_20130725.csv", "QC_test2_Aw_20130725_20131015.csv", "QC_test2_Aw_20140901_20140930.csv")

Rd file 'rarify.Rd':
\examples lines wider than 100 characters:
bugs.mysize <- rarify(inbug=DF.biodata, sample.ID="SampRep",abund="Count",subsiz=mySize, mySeed=Seed.MS)

These lines will be truncated in the PDF manual.

  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... WARNING
    Documented arguments not in \usage in documentation object 'Export.IHA':
    'fun.myDate.Format'

Undocumented arguments in documentation object 'fun.Stats'
'fun.myProcedure.Step'

Undocumented arguments in documentation object 'fun.dt.Type2'
'fun2.dt.Type'
Documented arguments not in \usage in documentation object 'fun.dt.Type2':
'fun.dt2.Type'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.

  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... WARNING
    'library' or 'require' calls not declared from:
    'IHA' 'StreamThermal' 'XLConnect' 'installr'
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
    WARNING
    'qpdf' is needed for checks on size reduction of PDFs
  • checking installed files from 'inst/doc' ... OK
  • checking for old-style vignette sources ... NOTE
    Vignette sources only in 'inst/doc':
    'ContDataQC_Vignette.Rmd'
    A 'vignettes' directory is required as from R 3.1.0
    and these will not be indexed nor checked
  • checking examples ... ERROR
    Running examples in 'ContDataQC-Ex.R' failed
    The error most likely occurred in:

base::assign(".ptime", proc.time(), pos = "CheckExEnv")

Name: CompSiteCDF

Title: CompSiteCDF, compare CDFs of sites

Aliases: CompSiteCDF

Keywords: CDF, comparison continuous data, site

** Examples

load bio data

df.data <- data_CompSiteCDF
dim(df.data)
[1] 349 6
View(df.data)
Error in View(df.data) : View() should not be used in examples etc
Execution halted

  • DONE
    Status: 1 ERROR, 4 WARNINGs, 7 NOTEs
    checking examples ... ERROR
    Running examples in 'ContDataQC-Ex.R' failed
    The error most likely occurred in:

base::assign(".ptime", proc.time(), pos = "CheckExEnv")

Name: CompSiteCDF

Title: CompSiteCDF, compare CDFs of sites

Aliases: CompSiteCDF

Keywords: CDF, comparison continuous data, site

** Examples

load bio data

df.data <- data_CompSiteCDF
dim(df.data)
[1] 349 6
View(df.data)
Error in View(df.data) : View() should not be used in examples etc
Execution halted

checking for portable file names ... WARNING
Found the following files with non-portable file names:
inst/rmd/Report_Aggregate - html.rmd
inst/rmd/Report_Aggregate - word.rmd
inst/rmd/Report_PeriodStats - word.rmd
inst/rmd/Report_QC - html.rmd
inst/rmd/Report_QC - word.rmd
inst/rmd/Report_Stats - html.rmd
inst/rmd/Report_Stats - word.rmd
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.

checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'Export.IHA':
'fun.myDate.Format'

Undocumented arguments in documentation object 'fun.Stats'
'fun.myProcedure.Step'

Undocumented arguments in documentation object 'fun.dt.Type2'
'fun2.dt.Type'
Documented arguments not in \usage in documentation object 'fun.dt.Type2':
'fun.dt2.Type'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.

checking for unstated dependencies in examples ... WARNING
'library' or 'require' calls not declared from:
'IHA' 'StreamThermal' 'XLConnect' 'installr'

checking package dependencies ... NOTE
Depends: includes the non-default packages:
'dataRetrieval' 'zoo' 'knitr' 'survival' 'doBy' 'rmarkdown'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'knitr' 'rmarkdown'
A package should be listed in only one of these fields.

checking top-level files ... NOTE
File
LICENSE
is not mentioned in the DESCRIPTION file.
Non-standard files/directories found at top level:
'CompSiteCDF_20170922_115723.pdf' 'data-raw'

checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'dataRetrieval' 'doBy' 'knitr' 'rmarkdown' 'survival' 'zoo'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.

checking R code for possible problems ... NOTE
CompSiteCDF: no visible global function definition for 'read.csv'
CompSiteCDF: no visible global function definition for 'View'
CompSiteCDF: no visible global function definition for 'ecdf'
CompSiteCDF: no visible global function definition for 'plot'
CompSiteCDF: no visible global function definition for 'pdf'
CompSiteCDF: no visible global function definition for 'par'
CompSiteCDF: no visible global function definition for 'hist'
CompSiteCDF: no visible global function definition for 'box'
CompSiteCDF: no visible global function definition for 'lines'
... 120 lines ...
myFile myFormat.Time myName.Date myName.DateTime na.omit par pdf plot
polygon quantile read.csv runif sd var write.csv write.table
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "axis", "box", "hist", "legend", "lines", "par",
"plot", "polygon")
importFrom("stats", "aggregate", "density", "ecdf", "median",
"na.omit", "quantile", "runif", "sd", "var")
importFrom("utils", "View", "flush.console", "head", "read.csv",
"write.csv", "write.table")
to your NAMESPACE file.

checking Rd line widths ... NOTE
Rd file 'CompSiteCDF.Rd':
\examples lines wider than 100 characters:
bugs.m
See
'C:/Users/Erik.Leppo/OneDrive - Tetra Tech, Inc/MyDocs_OneDrive/GitHub/ContDataQC.Rcheck/00check.log'
for details.

R CMD check results
1 error | 3 warnings | 7 notes
ysize <- rarify(inbug=DF.biodata, sample.ID="SampRep",abund="Count",subsiz=mySize, mySeed=Seed.MS)

Rd file 'ContDataQC.Rd':
\examples lines wider than 100 characters:
file.copy(file.path(path.package("ContDataQC"),"extdata",myFile),file.path(getwd(),Selection.SUB[1],myFile))
ContDataQC(myData.Operation, myData.SiteID, myData.Type, myData.DateRange.Start, myData.DateRange.End, myDir.import, myDir.export)
myConfig <- file.path(getwd(),Selection.SUB[1],"config.TZ.central.R") # include path if not in working directory
... 28 lines ...
#myFile <- c("test2_AW_20130426_20130725.csv", "test2_AW_20130725_20131015.csv", "test2_AW_20140901_20140930.csv")

Rd file 'fun.Stats.File.Rd':
\examples lines wider than 100 characters:
#myFile <- c("QC_test2_Aw_20130426_20130725.csv", "QC_test2_Aw_20130725_20131015.csv", "QC_test2_Aw_20140901_20140930.csv")

Rd file 'rarify.Rd':
\examples lines wider than 100 characters:
bugs.mysize <- rarify(inbug=DF.biodata, sample.ID="SampRep",abund="Count",subsiz=mySize, mySeed=Seed.MS)

These lines will be truncated in the PDF manual.

checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'ContDataQC_Vignette.Rmd'
A 'vignettes' directory is required as from R 3.1.0
and these will not be indexed nor checked

R CMD check succeeded

leppott added a commit that referenced this issue Sep 27, 2017
Issue #25 , Issues #37
Polishing rough edges.
@leppott
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leppott commented Sep 27, 2017

Moved packages from Depends to Suggests.

v2.0.1.9043

@leppott
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leppott commented Sep 27, 2017

Issues to check:

--1. Bad file names
checking for portable file names ... WARNING
Found the following files with non-portable file names:
inst/rmd/Report_Aggregate - html.rmd
inst/rmd/Report_Aggregate - word.rmd
inst/rmd/Report_PeriodStats - word.rmd
inst/rmd/Report_QC - html.rmd
inst/rmd/Report_QC - word.rmd
inst/rmd/Report_Stats - html.rmd
inst/rmd/Report_Stats - word.rmd
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.--

  1. checking R code for possible problems ... NOTE
    See each function

--3. Line width.
checking Rd line widths ... NOTE
LOTS--

  1. checking Rd \usage sections ... WARNING
    check on these.

--5. Vignette may be using packages not declared in DESCRIPTION
checking for unstated dependencies in examples ... WARNING
'library' or 'require' calls not declared from:
'IHA' 'StreamThermal' 'XLConnect' 'installr'--

  1. An example failed.
    checking examples ... ERROR

--7. License not in DESCRIPTION
LICENSE
is not mentioned in the DESCRIPTION file.
Non-standard files/directories found at top level:
'CompSiteCDF_20170922_115723.pdf' 'data-raw'--

--8. Vignette directory.--

@leppott
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leppott commented Sep 29, 2017

  1. Fixed Vignette error on creation. Put demo data into folder. Removed after vignette complete. Store files outside of package and copy into vignette folder.

v2.0.1.9045

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leppott commented Sep 29, 2017

  1. Added extra Suggests.
    XLConnect,
    installr,
    IHA,
    StreamThermal

v2.0.1.9046

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leppott commented Sep 29, 2017

  1. License.

v2.0.1.9046

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leppott commented Sep 29, 2017

  1. Line widths > 100 characters.

v2.0.1.9046

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leppott commented May 10, 2018

v2.0.2.9001, 2018-05-10

1 error | 2 warnings | 6 notes

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