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Issues list

Cannot add apparent simple SV on pangenome
#124 opened Feb 21, 2025 by LzzCongee updated Feb 24, 2025
The unitig graph output by hifiasm is not compatible
#123 opened Feb 14, 2025 by walt676 updated Feb 14, 2025
How to add short sequenced data to our pan-genome
#121 opened Dec 30, 2024 by Yonosukee updated Dec 30, 2024
Some questions about SV calling
#120 opened Dec 13, 2024 by HuangYihang1222 updated Dec 13, 2024
Minigraph does not find variants in simulated data
#119 opened Nov 29, 2024 by agolicz updated Nov 30, 2024
1
Simulating with a small sample
#118 opened Nov 27, 2024 by jp-jong updated Nov 27, 2024
Low accuracy on simulated reads and overlapping primary alignments question Further information is requested
#115 opened Oct 14, 2024 by xchang1 updated Oct 14, 2024
3
Add SN tag (or equivalent) for L lines
#114 opened Oct 8, 2024 by hugocarmaga updated Oct 8, 2024
Valid paths in a GFA don't have end-to-end alignments
#103 opened Sep 13, 2023 by rlorigro updated Jul 29, 2024
1
Node with no coverage (dc) on its own rank
#113 opened Jul 10, 2024 by jp-jong updated Jul 10, 2024
feature requests for output VCF
#109 opened Feb 1, 2024 by zeeev updated Apr 21, 2024
1
Illegal instruction
#110 opened Mar 13, 2024 by Mar10L updated Apr 21, 2024
2
running minigraph
#98 opened Jun 8, 2023 by Gon1976 updated Jan 12, 2024
1
Empty alignment gaf output
#93 opened Mar 3, 2023 by abanerjee10 updated Nov 21, 2023
4
minigraph and minimap2 alignment
#73 opened Aug 18, 2022 by 8banzhuan updated Nov 13, 2023
1
conversion to stableGaf incorrectly assigns forward orientation
#83 opened Nov 15, 2022 by tobiasrausch updated Nov 13, 2023
1
sequence to graph mapping didn't work neither
#82 opened Nov 4, 2022 by lingliao updated Nov 13, 2023
1
minigraph - stable fa - shot sequences
#104 opened Oct 27, 2023 by bioteksampath updated Oct 27, 2023
comparing --call output bed files with gfa file
#102 opened Aug 11, 2023 by suyeonwy updated Aug 11, 2023
Masking regions for chaining?
#100 opened Jun 30, 2023 by rlorigro updated Jun 30, 2023
final link failed: Nonrepresentable section on output
#96 opened May 30, 2023 by jingydz updated May 30, 2023
some warnings while generating a genome graph
#94 opened Mar 31, 2023 by hxt163 updated Mar 31, 2023
Incorrect path alignment
#91 opened Feb 17, 2023 by tobiasrausch updated Feb 17, 2023
size difference when reciprocal minigraphing
#90 opened Feb 13, 2023 by cistarsa updated Feb 13, 2023
Classification of structural variants
#89 opened Feb 1, 2023 by ValentinaPeona updated Feb 1, 2023
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