docker-compose.yml

x-app: &app
  image: agroportal/ontologies_api:master
  environment: &env
    # default bundle config resolves to /usr/local/bundle/config inside of the container
    # we are setting it to local app directory if we need to use 'bundle config local'
    BUNDLE_PATH: /srv/ontoportal/bundle
    COVERAGE: 'true' # enable simplecov code coverage
    REDIS_HOST: redis-ut
    REDIS_PORT: 6379
    SOLR_TERM_SEARCH_URL: http://solr-ut:8983/solr
    SOLR_PROP_SEARCH_URL: http://solr-ut:8983/solr
    GOO_BACKEND_NAME: 4store
    GOO_PORT: 9000
    GOO_HOST: 4store-ut
    MGREP_HOST: mgrep-ut
    MGREP_PORT: 55555
    REPOSITORY_FOLDER: /srv/ontoportal/data/repository
    REPORT_PATH: /srv/ontoportal/data/reports/ontologies_report.json
    MGREP_DICTIONARY_FILE: /srv/ontoportal/data/mgrep
  stdin_open: true
  tty: true
  command: /bin/bash



services:
  api:
    <<: *app
    env_file:
      .env
    environment:
      <<: *env
      BUNDLE_APP_CONFIG: /srv/ontoportal/ontologies_api/.bundle

    profiles:
      - 4store
    depends_on:
      solr-ut:
        condition: service_healthy
      redis-ut:
        condition: service_healthy
      mgrep-ut:
        condition: service_started
      4store-ut:
        condition: service_started
      ncbo_cron:
        condition: service_started
    ports:
      - "9393:9393"
    volumes:
      # bundle volume for hosting gems installed by bundle; it speeds up gem install in local development
      - app_api:/srv/ontoportal/ontologies_api
      - repository:/srv/ontoportal/data/repository

  ncbo_cron:
    <<: *app
    image: agroportal/ncbo_cron:master
    env_file:
      .env
    environment:
      <<: *env
      BUNDLE_APP_CONFIG: /srv/ontoportal/ncbo_cron/.bundle
    command: "bundle exec bin/ncbo_cron"
    profiles:
      - 4store
    volumes:
      - app_cron:/srv/ontoportal/ncbo_cron
      - repository:/srv/ontoportal/data/repository
      - history:/usr/local/hist
      - reports:/srv/ontoportal/data/reports
      - mgrep:/srv/ontoportal/data/mgrep
      - logs:/srv/ontoportal/ncbo_cron/logs
    depends_on:
      solr-ut:
        condition: service_healthy
      redis-ut:
        condition: service_healthy
      mgrep-ut:
        condition: service_started
      4store-ut:
        condition: service_started


  mgrep-ut:
    image: ontoportal/mgrep-ncbo:0.1
    ports:
      - "55556:55555"

  redis-ut:
    image: redis
    ports:
      - "6379:6379"
    command: [ "redis-server", "--save", "", "--appendonly", "no" ]
    healthcheck:
      test: redis-cli ping
      interval: 10s
      timeout: 3s
      retries: 10

  4store-ut:
    image: bde2020/4store
    volumes:
      - 4store:/var/lib/4store
    command: >
      bash -c "if [ ! -d '/var/lib/4store/ontoportal_kb' ]; then 4s-backend-setup --segments 4 ontoportal_kb; fi ; 4s-backend ontoportal_kb ; 4s-httpd -D -s-1 -p 9000 ontoportal_kb"

    ports:
      - "9000:9000"
    profiles:
      - fs
      - 4store

  solr-ut:
    image: solr:8
    ports:
      - 8983:8983
    command: bin/solr start -cloud -f
    volumes:
      - solr_data:/var/solr/data
    healthcheck:
      test: [ "CMD", "curl", "-f", "http://localhost:8983/solr/admin/info/system?wt=json" ]
      interval: 30s
      timeout: 10s
      retries: 3

  agraph-ut:
    image: franzinc/agraph:v8.1.0
    platform: linux/amd64
    environment:
      - AGRAPH_SUPER_USER=test
      - AGRAPH_SUPER_PASSWORD=xyzzy
    shm_size: 1g
    ports:
      #      - 10035:10035
      - 10000-10035:10000-10035
    volumes:
      - agdata:/agraph/data
      #      - ./agraph/etc:/agraph/etc
    command: >
      bash -c "/agraph/bin/agraph-control --config /agraph/etc/agraph.cfg start
      ; agtool repos create ontoportal_test --supersede
      ; agtool users add anonymous
      ; agtool users grant anonymous root:ontoportal_test:rw
      ; tail -f /agraph/data/agraph.log"
    # healthcheck:
    #   test: ["CMD-SHELL", "curl -sf http://127.0.0.1:10035/repositories/ontoportal_test/status | grep -iqE '(^running|^lingering)' || exit 1"]
    #   start_period: 10s
    #   interval: 10s
    #   timeout: 5s
    #   retries: 5
    profiles:
      - ag

  virtuoso-ut:
    image: tenforce/virtuoso:virtuoso7.2.5
    platform: linux/amd64
    environment:
      - SPARQL_UPDATE=true
    ports:
      - 1111:1111
      - 8890:8890
    profiles:
      - vo
    healthcheck:
      test: [ "CMD-SHELL", "curl -sf  http://localhost:8890/sparql  || exit 1" ]
      start_period: 10s
      interval: 60s
      timeout: 5s
      retries: 3

  graphdb-ut:
    image: ontotext/graphdb:10.3.3
    platform: linux/amd64
    privileged: true
    environment:
      GDB_HEAP_SIZE: 5G
      GDB_JAVA_OPTS: >-
        -Xms5g -Xmx5g
    ports:
      - 7200:7200
      - 7300:7300
    volumes:
      - ./test/data/graphdb-repo-config.ttl:/opt/graphdb/dist/configs/templates/data/graphdb-repo-config.ttl
      - ./test/data/graphdb-test-load.nt:/opt/graphdb/dist/configs/templates/data/graphdb-test-load.nt

    entrypoint: >
      bash -c " importrdf load -f -c /opt/graphdb/dist/configs/templates/data/graphdb-repo-config.ttl -m parallel /opt/graphdb/dist/configs/templates/data/graphdb-test-load.nt ; graphdb -Ddefault.min.distinct.threshold=3000 "
    profiles:
      - gb

volumes:
  app_api:
  app_cron:
  agdata:
  4store:
  repository:
  solr_data:
  reports:
  mgrep:
  logs:
  history: