Initial commit

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# IDE and editors
+.idea/
+.vscode/
+outputs/
+.vscode/tasks.json
+
+.python-version
+
+#gpu memory snapshots
+*.pickle
+data
+
+#scalene profiler outputs
+scalene/
+
+#user dependent jobs
+j_jobs/
+jobs_mosaic/
+jobs/
+
+#test files
+notebooks/to_delete.ipynb
+src/maxarseg/geo_datasets/datasets.py
+
+*.geojson
+
+#shape files
+*.shp
+*.shx
+*.dbf
+*.prj
+*.cpg
+*.qix
+*.qmd
+*.sbn
+*.sbx
+*.xml
+*.lock
+
+#geopacakge files
+*.gpkg
+
+*.csv
+*.npy
+*.tif
+*.parquet
+*.paquet
+
+stats/
+labelled/
+notebooks/
+
+morocco_builds/
+
+#recycle bin
+zz_recBin/

configs/custom_cfg.yaml

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+event:
+  ix: 5

configs/default_cfg.yaml

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+event:
+  ix: None
+  when: "pre"
+
+models:
+  gd:
+    bs: 1
+    size: 600
+    stride: 400
+    device: "cuda:0"
+    root_path: "./models/GDINO"
+    config_file_path: "./models/GDINO/configs/GroundingDINO_SwinT_OGC.py"
+    weight_path: "./models/GDINO/weights/groundingdino_swint_ogc.pth"
+    text_prompt: "bush"
+    box_threshold: 0.15
+    text_threshold: 0.30
+
+  df:
+    bs: 16
+    size: 600
+    patch_overlap: 0.25
+    device:
+      - 0 #to indicate cuda:0 input [int(0)], to not specify use 'auto'
+    box_threshold: 0.1
+
+  esam:
+    bs: 1
+    num_parall_queries: 200
+    size: 1024
+    stride: 768
+    device: "cuda:0"
+    root_path: "./models/EfficientSAM"
+
+detection:
+  trees:
+    use_GD: true
+    use_DF: false
+    nms_threshold: 0.5
+    min_ratio_GD_boxes_edges: 0.5
+    max_area_boxes_mt2: 6000
+    perc_reduce_tree_boxes: 0
+
+  buildings:
+    ext_mt_build_box: 0
+
+segmentation:
+  general:
+    clean_mask: true
+    rmv_holes_area_th: 80
+    rmv_small_obj_area_th: 80
+
+  roads:
+    road_width_mt: 5
+
+output:
+  out_dir_root: "./output"

configs/trees_cfg.yaml

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+models:
+  df:
+    bs: 16
+    size: 600
+    patch_overlap: 0.25
+    device:
+      - 0 #to indicate cuda:0 input [int(0)], to not specify use 'auto'
+    box_threshold: 0.1
+
+  gd:
+    size: 1024
+    stride: 1024
+    box_threshold: 0.12
+
+detection:
+  trees:
+    nms_threshold: 0.5
+    min_ratio_GD_boxes_edges: 0.5
+    max_area_boxes_mt2: 7000 # best in range 6000-8000

metadata/.gitignore

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+# ignore all files except for this one
+*
+!.gitignore

models/.gitignore

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+# ignore all files except for this one
+*
+!.gitignore

output/.gitignore

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+# ignore all files except for this one
+*
+!.gitignore