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sessionInfo
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> sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22631)
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936 LC_CTYPE=Chinese (Simplified)_China.936 LC_MONETARY=Chinese (Simplified)_China.936
[4] LC_NUMERIC=C LC_TIME=Chinese (Simplified)_China.936
attached base packages:
[1] parallel stats4 grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] ChIPseeker_1.30.3 minfi_1.40.0 bumphunter_1.36.0
[4] locfit_1.5-9.7 iterators_1.0.14 foreach_1.5.2
[7] igraph_1.4.2 WGCNA_1.72-1 fastcluster_1.2.3
[10] dynamicTreeCut_1.63-1 ggpubr_0.6.0 clusterProfiler_4.2.2
[13] NMF_0.26 cluster_2.1.4 rngtools_1.5.2
[16] registry_0.5-1 LOLA_1.19.1 ggbeeswarm_0.7.2
[19] Vennerable_3.1.0.9000 viridis_0.6.3 viridisLite_0.4.2
[22] pheatmap_1.0.12 patchwork_1.1.2 org.Hs.eg.db_3.14.0
[25] genomation_1.26.0 dplyr_1.1.2 corrplot_0.92
[28] UpSetR_1.4.0 TxDb.Hsapiens.UCSC.hg38.knownGene_3.14.0 GenomicFeatures_1.46.5
[31] AnnotationDbi_1.56.2 SeuratObject_4.1.3 Seurat_4.3.0
[34] RColorBrewer_1.1-3 BSgenome.Hsapiens.UCSC.hg38_1.4.4 BSgenome_1.62.0
[37] rtracklayer_1.54.0 Biostrings_2.62.0 XVector_0.34.0
[40] rhdf5_2.38.1 SummarizedExperiment_1.24.0 Biobase_2.54.0
[43] MatrixGenerics_1.6.0 Rcpp_1.0.10 Matrix_1.5-4
[46] GenomicRanges_1.46.1 GenomeInfoDb_1.30.1 IRanges_2.28.0
[49] S4Vectors_0.32.4 BiocGenerics_0.40.0 matrixStats_0.63.0
[52] data.table_1.14.8 stringr_1.5.0 plyr_1.8.8
[55] magrittr_2.0.3 ggplot2_3.4.2 gtable_0.3.3
[58] gtools_3.9.4 gridExtra_2.3 ArchR_1.0.2
loaded via a namespace (and not attached):
[1] Hmisc_5.0-1 ica_1.0-3 Rsamtools_2.10.0
[4] lmtest_0.9-40 crayon_1.5.2 MASS_7.3-58.3
[7] rhdf5filters_1.6.0 nlme_3.1-162 backports_1.4.1
[10] impute_1.68.0 GOSemSim_2.20.0 rlang_1.1.0
[13] ROCR_1.0-11 irlba_2.3.5.1 limma_3.50.3
[16] filelock_1.0.2 BiocParallel_1.28.3 rjson_0.2.21
[19] bit64_4.0.5 glue_1.6.2 sctransform_0.3.5
[22] vipor_0.4.5 spatstat.sparse_3.0-1 DOSE_3.20.1
[25] spatstat.geom_3.1-0 tidyselect_1.2.0 fitdistrplus_1.1-11
[28] XML_3.99-0.14 tidyr_1.3.0 zoo_1.8-12
[31] GenomicAlignments_1.30.0 xtable_1.8-4 evaluate_0.21
[34] cli_3.6.1 zlibbioc_1.40.0 doRNG_1.8.6
[37] rstudioapi_0.14 miniUI_0.1.1.1 sp_1.6-0
[40] rpart_4.1.19 fastmatch_1.1-3 treeio_1.18.1
[43] seqPattern_1.26.0 shiny_1.7.4 xfun_0.39
[46] askpass_1.1 multtest_2.50.0 caTools_1.18.2
[49] tidygraph_1.2.3 KEGGREST_1.34.0 tibble_3.2.1
[52] base64_2.0.1 ggrepel_0.9.3 scrime_1.3.5
[55] ape_5.7-1 listenv_0.9.0 reshape_0.8.9
[58] png_0.1-8 future_1.32.0 withr_2.5.0
[61] bitops_1.0-7 ggforce_0.4.1 RBGL_1.70.0
[64] pillar_1.9.0 gplots_3.1.3 cachem_1.0.7
[67] DelayedMatrixStats_1.16.0 vctrs_0.6.1 ellipsis_0.3.2
[70] generics_0.1.3 tools_4.1.0 httpgd_1.3.1
[73] foreign_0.8-84 beeswarm_0.4.0 munsell_0.5.0
[76] tweenr_2.0.2 fgsea_1.20.0 DelayedArray_0.20.0
[79] fastmap_1.1.1 compiler_4.1.0 abind_1.4-5
[82] httpuv_1.6.9 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2 beanplot_1.3.1
[85] plotly_4.10.1 GenomeInfoDbData_1.2.7 lattice_0.21-8
[88] deldir_1.0-6 utf8_1.2.3 later_1.3.0
[91] BiocFileCache_2.2.1 jsonlite_1.8.4 scales_1.2.1
[94] graph_1.72.0 sparseMatrixStats_1.6.0 tidytree_0.4.2
[97] pbapply_1.7-0 carData_3.0-5 genefilter_1.76.0
[100] lazyeval_0.2.2 promises_1.2.0.1 car_3.1-2
[103] doParallel_1.0.17 goftest_1.2-3 spatstat.utils_3.0-2
[106] reticulate_1.28 checkmate_2.1.0 nor1mix_1.3-0
[109] rmarkdown_2.21 cowplot_1.1.1 siggenes_1.68.0
[112] Rtsne_0.16 downloader_0.4 uwot_0.1.14
[115] HDF5Array_1.22.1 survival_3.5-5 yaml_2.3.7
[118] plotrix_3.8-2 systemfonts_1.0.4 htmltools_0.5.5
[121] memoise_2.0.1 BiocIO_1.4.0 quadprog_1.5-8
[124] graphlayouts_0.8.4 digest_0.6.31 mime_0.12
[127] rappdirs_0.3.3 RSQLite_2.3.1 yulab.utils_0.0.6
[130] future.apply_1.10.0 blob_1.2.4 preprocessCore_1.56.0
[133] splines_4.1.0 Formula_1.2-5 Rhdf5lib_1.16.0
[136] illuminaio_0.36.0 Cairo_1.6-0 RCurl_1.98-1.12
[139] broom_1.0.4 hms_1.1.3 colorspace_2.1-0
[142] base64enc_0.1-3 BiocManager_1.30.20 aplot_0.1.10
[145] nnet_7.3-18 GEOquery_2.62.2 mclust_6.0.0
[148] RANN_2.6.1 enrichplot_1.14.2 fansi_1.0.4
[151] tzdb_0.3.0 parallelly_1.35.0 R6_2.5.1
[154] ggridges_0.5.4 lifecycle_1.0.3 curl_5.0.0
[157] ggsignif_0.6.4 leiden_0.4.3 DO.db_2.9
[160] qvalue_2.26.0 RcppAnnoy_0.0.20 spatstat.explore_3.1-0
[163] htmlwidgets_1.6.2 polyclip_1.10-4 biomaRt_2.50.3
[166] purrr_1.0.1 shadowtext_0.1.2 gridGraphics_0.5-1
[169] globals_0.16.2 openssl_2.0.6 htmlTable_2.4.1
[172] spatstat.random_3.1-4 progressr_0.13.0 codetools_0.2-19
[175] GO.db_3.14.0 prettyunits_1.1.1 dbplyr_2.3.2
[178] gridBase_0.4-7 DBI_1.1.3 ggfun_0.1.3
[181] tensor_1.5 httr_1.4.5 KernSmooth_2.23-20
[184] stringi_1.7.12 progress_1.2.2 reshape2_1.4.4
[187] farver_2.1.1 annotate_1.72.0 ggtree_3.2.1
[190] xml2_1.3.3 boot_1.3-28.1 restfulr_0.0.15
[193] readr_2.1.4 ggplotify_0.1.0 scattermore_0.8
[196] bit_4.0.5 scatterpie_0.1.9 spatstat.data_3.0-1
[199] ggraph_2.1.0 pkgconfig_2.0.3 rstatix_0.7.2
[202] knitr_1.42