Custom code for IVF project.
We applied single-cell multiomics sequencing for seven 26 infants with blastula chromosomal mosaicism detected by TE biopsy.
Structure of the repo:
IVF_Mosac_Embryo_Transfer/ ├── README.md ├── pipeline_TE_PGT_A (shell script to process CNV-Seq of TE biopsy) │ └── CNVSeq.one.sh ├── pipeline_scMALBAC (shell script to process single-cell WGS of PBMC) │ └── RUN.multiplexed_MALBAC.sh ├── pipeline_scRNA (shell script to process single-cell RNA-Seq of PBMC) │ ├── S00.Get_Params.sh │ ├── S01.scRNA_UMI_QC.sh │ ├── S02.scRNA_UMI_STAR.sh │ ├── S03.scRNA_UMI_UMI.sh │ ├── S04.Check_Test.R │ ├── scRNA_Normalization.R │ └── scRNA_UMI.sh ├── scDNA.R (Downstream analysis of single-cell CNV) └── scRNA.R (Downstream analysis of single-cell RNA-Seq)