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Update README.md
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liuzhenyu-yyy authored Oct 20, 2022
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Expand Up @@ -12,7 +12,7 @@ Structure of the repository:
│   ├── S02.umi.process.one.sh ## QC, deduplication and trancriptome quantification
│   ├── S03.umi.Summarize.sh ## Summarize statistics, merge UMI count matrix
│   ├── S04.umi.assemble.one.sh ## Reference-guided trancriptome assemble
│   ├── S05.umi.VDJ.BCR.one.sh ## Immune repertoire profiling of immunoglobulin.
│   ├── S05.umi.VDJ.BCR.one.sh ## Immune repertoire profiling of immunoglobulin
│   ├── S05.umi.VDJ.TCR.one.sh ## Immune repertoire profiling of T cell receptor
│   ├──merge_counts_tsvs.R ## Merge UMI count matrix
│   └──MergeAssembly
Expand All @@ -33,8 +33,8 @@ Structure of the repository:
│   │   ├── Technical_Performance.R ## Technical performance of SCAN-seq2
│   │   └── Pseudogene.R ## Systematic evaluation of pseudogene expression
│   ├── Part2_Transcriptome_Assembly
   │   ├── BCR_TCR_gtf
   │   │   ├── Hg38.IGH.gtf
├── BCR_TCR_gtf ## Annotation for human immunoglobulin and T cell receptor genes
│ │ ├── Hg38.IGH.gtf
│   │   │   ├── Hg38.IGK.gtf
│   │   │   ├── Hg38.IGL.gtf
│   │   │   ├── Hg38.TRA.gtf
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