forked from STAT540-UBC/STAT540-UBC-archive
-
Notifications
You must be signed in to change notification settings - Fork 0
/
index.html
150 lines (126 loc) · 5.03 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<title></title>
<script src="libs/jquery-1.11.0/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<link href="libs/bootstrap-2.3.2/css/united.min.css" rel="stylesheet" />
<link href="libs/bootstrap-2.3.2/css/bootstrap-responsive.min.css" rel="stylesheet" />
<script src="libs/bootstrap-2.3.2/js/bootstrap.min.js"></script>
<style type="text/css">code{white-space: pre;}</style>
<link rel="stylesheet"
href="libs/highlight/default.css"
type="text/css" />
<script src="libs/highlight/highlight.js"></script>
<style type="text/css">
pre:not([class]) {
background-color: white;
}
</style>
<script type="text/javascript">
if (window.hljs && document.readyState && document.readyState === "complete") {
window.setTimeout(function() {
hljs.initHighlighting();
}, 0);
}
</script>
<link rel="stylesheet" href="libs/local/nav.css" type="text/css" />
</head>
<body>
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
</style>
<div class="container-fluid main-container">
<header>
<div class="nav">
<a class="nav-logo" href="index.html">
<img src="static/img/stat540-logo-s.png" width="70px" height="70px"/>
</a>
<ul>
<li class="home"><a href="index.html">Home</a></li>
<li class="announcements"><a href="announcements.html">Announcements</a></li>
<li class="syllabus"><a href="syllabus.html">Syllabus</a></li>
<li class="lectures"><a href="lectures.html">Lectures</a></li>
<li class="seminars"><a href="seminars.html">Seminars</a></li>
<li class="assignments"><a href="assignments.html">Assignments</a></li>
<li class="people"><a href="people.html">People</a></li>
</ul>
</div>
</header>
<div id="statistical-methods-for-high-dimensional-biology" class="section level1">
<h1>Statistical Methods for High Dimensional Biology</h1>
<div id="ubc-stat-540" class="section level3">
<h3>UBC STAT 540</h3>
<p>STAT 540 is a 3 credit course with a mandatory computing seminar.</p>
<p>Cross-listed as STAT 540, BIOF 540, GSAT 540</p>
</div>
<div id="time-and-location" class="section level3">
<h3>Time and Location</h3>
<p>05 January 2015 - 08 April 2015</p>
<div id="lecture-sec-201" class="section level4">
<h4>Lecture (Sec 201)</h4>
<p><strong>Time</strong>: Mon Wed 9:30 - 11am</p>
<p><strong>Location</strong>: ESB 2012</p>
</div>
<div id="seminar-computing-lab-s2a-registration-is-required" class="section level4">
<h4>Seminar / computing lab (S2A) – REGISTRATION IS REQUIRED!</h4>
<p><strong>Time</strong>: officially runs Wed 12pm - 1pm; unofficially students are welcome to come after class around 11am and begin a ~1 hour guided analysis with TA support; TA will remain in the lab until 1pm to help those who start as 12pm and for general office hours.</p>
<p><strong>Location</strong>: ESB 1042 and 1046</p>
</div>
</div>
<div id="learning-objectives" class="section level3">
<h3>Learning objectives:</h3>
<ul>
<li>explore and visualize genomics data</li>
<li>apply tailored statitical methods for high dimensional biology data</li>
<li>make your work reproducible, reusable, and shareable</li>
<li>work with real data in a collaborative model</li>
</ul>
</div>
<div id="selected-topics" class="section level3">
<h3>Selected topics</h3>
<ul>
<li>Exploration, visualization, and quality assessment of high dimensional genomics data</li>
<li>Large scale statistical inference</li>
<li>Analysis of microarray, RNASeq, and epigenetics data</li>
<li>Principal component analysis (PCA)</li>
<li>Cluster analysis</li>
<li>Cross validation</li>
<li>Model selection for classification and linear regression models</li>
<li>Gene function and gene set analysis</li>
<li>Resampling and the bootstrap</li>
</ul>
</div>
<div id="more-info" class="section level3">
<h3>More info?</h3>
<p>Use the navigation bar above!</p>
<p>The course organization on GitHub: <a href="https://github.com/STAT540-UBC">https://github.com/STAT540-UBC</a></p>
<p>Repo that creates this website: <a href="https://github.com/STAT540-UBC/STAT540-UBC.github.io">https://github.com/STAT540-UBC/STAT540-UBC.github.io</a></p>
<p>Repo that supports the Discussion forum: <a href="https://github.com/STAT540-UBC/Discussion">https://github.com/STAT540-UBC/Discussion</a></p>
</div>
</div>
</div>
<script>
// add bootstrap table styles to pandoc tables
$(document).ready(function () {
$('tr.header').parent('thead').parent('table').addClass('table table-condensed');
});
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>