From 12a8ce6a13a29645e5557bd60bc7689a0446b8bf Mon Sep 17 00:00:00 2001 From: Dmytro Polityka Date: Fri, 4 Oct 2024 04:14:45 +0200 Subject: [PATCH] upgrade langchain to 0.3.x --- assessment_module_manager/poetry.lock | 297 +++++----- assessment_module_manager/pyproject.toml | 2 +- athena/athena/endpoints.py | 2 +- .../helpers/programming/code_repository.py | 6 +- athena/athena/schemas/exercise.py | 2 +- athena/athena/schemas/feedback.py | 2 +- athena/athena/schemas/modeling_exercise.py | 2 +- athena/athena/schemas/programming_exercise.py | 11 +- athena/athena/schemas/schema.py | 2 +- athena/athena/schemas/submission.py | 2 +- athena/athena/schemas/text_exercise.py | 2 +- athena/poetry.lock | 448 ++++++++------ athena/pyproject.toml | 2 +- .../modeling/module_modeling_llm/poetry.lock | 207 +++---- .../module_modeling_llm/pyproject.toml | 4 +- .../module_programming_llm/__main__.py | 9 +- .../helpers/llm_utils.py | 40 +- .../helpers/models/model_config.py | 3 + .../helpers/models/openai.py | 7 +- .../helpers/models/replicate.py | 2 +- .../module_programming_llm/helpers/utils.py | 2 +- .../module_programming_llm/poetry.lock | 552 ++++++++++++------ .../module_programming_llm/pyproject.toml | 10 +- modules/text/module_text_llm/poetry.lock | 228 ++++---- modules/text/module_text_llm/pyproject.toml | 4 +- 25 files changed, 1082 insertions(+), 766 deletions(-) diff --git a/assessment_module_manager/poetry.lock b/assessment_module_manager/poetry.lock index d2b2a7a3e..c2f99a190 100644 --- a/assessment_module_manager/poetry.lock +++ b/assessment_module_manager/poetry.lock @@ -2,13 +2,13 @@ [[package]] name = "anyio" -version = "4.4.0" +version = "4.6.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "anyio-4.4.0-py3-none-any.whl", hash = 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"https://github.com/ls1intum/Athena.git", rev = "9773c41", subdirectory = "athena"} fastapi = "^0.109.1" uvicorn = "^0.23.0" httpx = "^0.24.1" diff --git a/athena/athena/endpoints.py b/athena/athena/endpoints.py index 6d259a2a2..a30140500 100644 --- a/athena/athena/endpoints.py +++ b/athena/athena/endpoints.py @@ -156,7 +156,7 @@ class SubmissionSelectorRequest(BaseModel): class Config: # Allow camelCase field names in the API (converted to snake_case) alias_generator = to_camel - allow_population_by_field_name = True + populate_by_name = True @app.post("/select_submission", responses=module_responses) @authenticated diff --git a/athena/athena/helpers/programming/code_repository.py b/athena/athena/helpers/programming/code_repository.py index 31a1675ef..c64aaa900 100644 --- a/athena/athena/helpers/programming/code_repository.py +++ b/athena/athena/helpers/programming/code_repository.py @@ -18,7 +18,7 @@ def get_repository_zip(url: str, authorization_secret: Optional[str] = None) -> the cache or by downloading it, and return a ZipFile object. Optional: Authorization secret for the API. If omitted, it will be auto-determined given the request session. """ - url_hash = hashlib.md5(url.encode("utf-8")).hexdigest() + url_hash = hashlib.md5(str(url).encode("utf-8")).hexdigest() file_name = url_hash + ".zip" cache_file_path = cache_dir / file_name @@ -27,7 +27,7 @@ def get_repository_zip(url: str, authorization_secret: Optional[str] = None) -> if contextvars.repository_authorization_secret_context_var_empty(): raise ValueError("Authorization secret for the repository API is not set. Pass authorization_secret to this function or add the X-Repository-Authorization-Secret header to the request from the assessment module manager.") authorization_secret = contextvars.get_repository_authorization_secret_context_var() - with httpx.stream("GET", url, headers={ "Authorization": cast(str, authorization_secret) }) as response: + with httpx.stream("GET", str(url), headers={ "Authorization": cast(str, authorization_secret) }) as response: response.raise_for_status() with open(cache_file_path, "wb") as f: for chunk in response.iter_bytes(): @@ -42,7 +42,7 @@ def get_repository(url: str, authorization_secret: Optional[str] = None) -> Repo downloading it, and return a Repo object. """ - url_hash = hashlib.md5(url.encode("utf-8")).hexdigest() + url_hash = hashlib.md5(str(url).encode("utf-8")).hexdigest() dir_name = url_hash + ".git" cache_dir_path = cache_dir / dir_name diff --git a/athena/athena/schemas/exercise.py b/athena/athena/schemas/exercise.py index 1f173e2e3..ee85e05a5 100644 --- a/athena/athena/schemas/exercise.py +++ b/athena/athena/schemas/exercise.py @@ -29,4 +29,4 @@ class Exercise(Schema, ABC): meta: dict = Field({}, example={"internal_id": "5"}) class Config: - orm_mode = True + from_attributes = True diff --git a/athena/athena/schemas/feedback.py b/athena/athena/schemas/feedback.py index 4cf9c6a2e..24af49410 100644 --- a/athena/athena/schemas/feedback.py +++ b/athena/athena/schemas/feedback.py @@ -33,4 +33,4 @@ def to_model(self, is_suggestion: bool = False, lms_id: Optional[int] = None, lm return type(self).get_model_class()(**self.dict(), is_suggestion=is_suggestion, lms_id=lms_id, lms_url=lms_url) class Config: - orm_mode = True + from_attributes = True diff --git a/athena/athena/schemas/modeling_exercise.py b/athena/athena/schemas/modeling_exercise.py index 70452f839..c3e34469a 100644 --- a/athena/athena/schemas/modeling_exercise.py +++ b/athena/athena/schemas/modeling_exercise.py @@ -8,6 +8,6 @@ class ModelingExercise(Exercise): """A modeling exercise that can be solved by students, enhanced with metadata.""" - type: ExerciseType = Field(ExerciseType.modeling, const=True) + type: ExerciseType = Field(ExerciseType.modeling, Literal=True) example_solution: Optional[str] = Field(None, description="An example solution to the exercise.") diff --git a/athena/athena/schemas/programming_exercise.py b/athena/athena/schemas/programming_exercise.py index ac875b05d..a78cf8f9d 100644 --- a/athena/athena/schemas/programming_exercise.py +++ b/athena/athena/schemas/programming_exercise.py @@ -10,7 +10,7 @@ class ProgrammingExercise(Exercise): """A programming exercise that can be solved by students, enhanced with metadata.""" - type: ExerciseType = Field(ExerciseType.programming, const=True) + type: ExerciseType = Field(ExerciseType.programming, Literal=True) programming_language: str = Field(description="The programming language that is used for this exercise.", example="java") solution_repository_uri: AnyUrl = Field(description="URL to the solution git repository, which contains the " @@ -51,4 +51,11 @@ def get_tests_zip(self) -> ZipFile: def get_tests_repository(self) -> Repo: """Return the tests repository as a Repo object.""" - return get_repository(self.tests_repository_uri) \ No newline at end of file + return get_repository(self.tests_repository_uri) + + def to_model(self): + model = super().to_model() + model.solution_repository_uri = str(self.solution_repository_uri) + model.template_repository_uri = str(self.template_repository_uri) + model.tests_repository_uri = str(self.tests_repository_uri) + return model \ No newline at end of file diff --git a/athena/athena/schemas/schema.py b/athena/athena/schemas/schema.py index 67e146ada..b0e7e6b7f 100644 --- a/athena/athena/schemas/schema.py +++ b/athena/athena/schemas/schema.py @@ -32,4 +32,4 @@ def to_model(self): class Config: # Allow camelCase field names in the API (converted to snake_case) alias_generator = to_camel - allow_population_by_field_name = True \ No newline at end of file + populate_by_name = True \ No newline at end of file diff --git a/athena/athena/schemas/submission.py b/athena/athena/schemas/submission.py index f9e39c372..0bf684bdc 100644 --- a/athena/athena/schemas/submission.py +++ b/athena/athena/schemas/submission.py @@ -12,4 +12,4 @@ class Submission(Schema, ABC): meta: dict = Field({}, example={}) class Config: - orm_mode = True + from_attributes = True diff --git a/athena/athena/schemas/text_exercise.py b/athena/athena/schemas/text_exercise.py index 6c8367667..ac3861a70 100644 --- a/athena/athena/schemas/text_exercise.py +++ b/athena/athena/schemas/text_exercise.py @@ -8,6 +8,6 @@ class TextExercise(Exercise): """A text exercise that can be solved by students, enhanced with metadata.""" - type: ExerciseType = Field(ExerciseType.text, const=True) + type: ExerciseType = Field(ExerciseType.text, Literal=True) example_solution: Optional[str] = Field(None, description="An example solution to the exercise.") diff --git a/athena/poetry.lock b/athena/poetry.lock index a9d171803..6a72b908f 100644 --- a/athena/poetry.lock +++ b/athena/poetry.lock @@ -1,14 +1,25 @@ # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = 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b/modules/modeling/module_modeling_llm/pyproject.toml index b57e0e2e9..bc95a85d6 100644 --- a/modules/modeling/module_modeling_llm/pyproject.toml +++ b/modules/modeling/module_modeling_llm/pyproject.toml @@ -7,8 +7,8 @@ license = "MIT" [tool.poetry.dependencies] python = "3.11.*" -athena = { path = "../../../athena", develop = true } -#athena = { git = "https://github.com/ls1intum/Athena.git", rev = "d9ff3bd", subdirectory = "athena"} +#athena = { path = "../../../athena", develop = true } +athena = { git = "https://github.com/ls1intum/Athena.git", rev = "9773c41", subdirectory = "athena"} openai = "1.42.0" langchain = "0.2.15" python-dotenv = "1.0.0" diff --git a/modules/programming/module_programming_llm/module_programming_llm/__main__.py b/modules/programming/module_programming_llm/module_programming_llm/__main__.py index e8356270f..2daf56637 100644 --- a/modules/programming/module_programming_llm/module_programming_llm/__main__.py +++ b/modules/programming/module_programming_llm/module_programming_llm/__main__.py @@ -1,6 +1,8 @@ +import os from typing import List import tiktoken +from langchain_core.globals import set_debug, set_verbose from athena import ( app, @@ -52,4 +54,9 @@ async def suggest_feedback(exercise: Exercise, submission: Submission, is_graded if __name__ == "__main__": # Preload for token estimation later tiktoken.get_encoding("cl100k_base") - app.start() \ No newline at end of file + app.start() + + enable_debug = os.getenv("ENABLE_DEBUGGING_INFO", "False").lower() in ("true", "1") + if enable_debug: + set_debug(True) + set_verbose(True) \ No newline at end of file diff --git a/modules/programming/module_programming_llm/module_programming_llm/helpers/llm_utils.py b/modules/programming/module_programming_llm/module_programming_llm/helpers/llm_utils.py index a035a5970..02d421bef 100644 --- a/modules/programming/module_programming_llm/module_programming_llm/helpers/llm_utils.py +++ b/modules/programming/module_programming_llm/module_programming_llm/helpers/llm_utils.py @@ -1,24 +1,21 @@ from typing import Optional, Type, TypeVar, List, Any, Dict from langchain.callbacks.tracers import langchain +from langchain_core.output_parsers.openai_functions import JsonOutputFunctionsParser +from langchain_core.utils.function_calling import convert_to_openai_function from pydantic import BaseModel, ValidationError import tiktoken -from langchain.chains import LLMChain -from langchain.chat_models import ChatOpenAI +from langchain_community.chat_models import ChatOpenAI from langchain.base_language import BaseLanguageModel from langchain.prompts import ( ChatPromptTemplate, SystemMessagePromptTemplate, HumanMessagePromptTemplate, ) -from langchain.chains.openai_functions import create_structured_output_chain from langchain.output_parsers import PydanticOutputParser from langchain.schema import ( - OutputParserException, - BaseLLMOutputParser, - Generation, - LLMResult, + OutputParserException ) from athena import emit_meta, get_experiment_environment @@ -87,7 +84,7 @@ def supports_function_calling(model: BaseLanguageModel): Returns: boolean: True if the model supports function calling, False otherwise """ - return False # isinstance(model, ChatOpenAI) TODO: find out how to make function calling work again + return isinstance(model, ChatOpenAI) def get_chat_prompt_with_formatting_instructions( @@ -154,21 +151,32 @@ async def predict_and_parse( tags.append(f"run-{experiment.run_id}") if supports_function_calling(model): - chain = create_structured_output_chain(pydantic_object, llm=model, prompt=chat_prompt, tags=tags) - chain.verbose = True + openai_functions = [convert_to_openai_function(pydantic_object)] + + runnable = chat_prompt | model.bind(functions=openai_functions).with_retry( + retry_if_exception_type=(ValueError, OutputParserException), + wait_exponential_jitter=True, + stop_after_attempt=3, + ) | JsonOutputFunctionsParser() + try: - return await chain.arun(**prompt_input) + output_dict = await runnable.ainvoke(prompt_input) + return pydantic_object.parse_obj(output_dict) except (OutputParserException, ValidationError) as e: logger.error("Exception type: %s, Message: %s", type(e).__name__, e) return None output_parser = PydanticOutputParser(pydantic_object=pydantic_object) - chain = LLMChain(llm=model, prompt=chat_prompt, output_parser=output_parser, tags=tags) + + runnable = chat_prompt | model.with_retry( + retry_if_exception_type=(ValueError, OutputParserException), + wait_exponential_jitter=True, + stop_after_attempt=3, + ) | output_parser + try: - return await chain.arun(**prompt_input) + output_dict = await runnable.ainvoke(prompt_input) + return pydantic_object.parse_obj(output_dict) except (OutputParserException, ValidationError) as e: logger.error("Exception type: %s, Message: %s", type(e).__name__, e) - # In the future, we should probably have some recovery mechanism here (i.e. fix the output with another prompt) return None - - # todo debug settings diff --git a/modules/programming/module_programming_llm/module_programming_llm/helpers/models/model_config.py b/modules/programming/module_programming_llm/module_programming_llm/helpers/models/model_config.py index eae644f57..cdc84c900 100644 --- a/modules/programming/module_programming_llm/module_programming_llm/helpers/models/model_config.py +++ b/modules/programming/module_programming_llm/module_programming_llm/helpers/models/model_config.py @@ -5,6 +5,9 @@ class ModelConfig(BaseModel, ABC): + class Config: + protected_namespaces = () + @abstractmethod def get_model(self) -> BaseLanguageModel: pass diff --git a/modules/programming/module_programming_llm/module_programming_llm/helpers/models/openai.py b/modules/programming/module_programming_llm/module_programming_llm/helpers/models/openai.py index 23e1669c2..75fa805f6 100644 --- a/modules/programming/module_programming_llm/module_programming_llm/helpers/models/openai.py +++ b/modules/programming/module_programming_llm/module_programming_llm/helpers/models/openai.py @@ -4,9 +4,10 @@ from typing import Dict, List from enum import Enum -from pydantic import Field, validator, PositiveInt +from pydantic import Field, field_validator, PositiveInt from langchain.base_language import BaseLanguageModel -from langchain_openai import AzureChatOpenAI, ChatOpenAI +from langchain_community.chat_models import ChatOpenAI +from langchain_openai import AzureChatOpenAI from athena.logger import logger from .model_config import ModelConfig @@ -100,7 +101,7 @@ class OpenAIModelConfig(ModelConfig): [See more information about frequency and presence penalties.](https://platform.openai.com/docs/api-reference/parameter-details)\ """) - @validator('max_tokens') + @field_validator('max_tokens') def max_tokens_must_be_positive(cls, v): """ Validate that max_tokens is a positive integer. diff --git 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