From a54eb1e180cdaac16bd328761e52daf90c91f9e0 Mon Sep 17 00:00:00 2001 From: Paul Schwind Date: Sun, 22 Oct 2023 22:48:30 +0200 Subject: [PATCH] ThemisML Python upgrade (#153) * Upgrade Python version for ThemisML * Update Python version in ThemisML * dependency fix * add postgresql dependency * correct postgresql dev * downgrade torch in pyproject toml because it could not be found * Add pytorch again * torch installation in pyproject toml * Simplify installation --- module_programming_themisml/Dockerfile | 13 +- module_programming_themisml/poetry.lock | 723 +++++++++++---------- module_programming_themisml/pyproject.toml | 13 +- 3 files changed, 404 insertions(+), 345 deletions(-) diff --git a/module_programming_themisml/Dockerfile b/module_programming_themisml/Dockerfile index 153c08073..1f651e242 100644 --- a/module_programming_themisml/Dockerfile +++ b/module_programming_themisml/Dockerfile @@ -2,17 +2,17 @@ # This is the Dockerfile for the module_example. -# Pytorch CPU version is not yet available for Python 3.1 -FROM python:3.10 +# Pytorch CPU version is not yet available for Python 3.12 +FROM python:3.11 LABEL org.opencontainers.image.source=https://github.com/pal03377/Athena-New - + # Environment variable Python in Docker ENV PYTHONUNBUFFERED=1 WORKDIR /code # Poetry -RUN pip install --no-cache-dir poetry==1.5.0 +RUN pip install --no-cache-dir poetry==1.6.1 # Dependencies COPY pyproject.toml poetry.lock ./ @@ -23,11 +23,6 @@ RUN poetry config virtualenvs.create true \ && poetry config virtualenvs.in-project true \ && poetry install --no-interaction --no-ansi -# Re-install pytorch in the CPU version because we don't have a GPU -RUN poetry add https://download.pytorch.org/whl/cpu/torch-2.1.0%2Bcpu-cp310-cp310-linux_x86_64.whl -# Somehow, the torch library needs sympy to be installed manually as well -RUN poetry add sympy==1.12 - # Project files COPY . ./ diff --git a/module_programming_themisml/poetry.lock b/module_programming_themisml/poetry.lock index 592c842c4..b35ae38ba 100644 --- a/module_programming_themisml/poetry.lock +++ b/module_programming_themisml/poetry.lock @@ -1,9 +1,10 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. [[package]] name = "antlr4-python3-runtime" version = "4.13.1" description = "ANTLR 4.13.1 runtime for Python 3" +category = "main" optional = false python-versions = "*" files = [ @@ -15,6 +16,7 @@ files = [ name = "anyio" version = "4.0.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "main" optional = false python-versions = ">=3.8" files = [ @@ -23,7 +25,6 @@ files = [ ] [package.dependencies] -exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""} idna = ">=2.8" sniffio = ">=1.1" @@ -36,6 +37,7 @@ trio = ["trio (>=0.22)"] name = "athena" version = "1.0.0" description = "This is a helper module for easier development of Athena modules. It provides communication functionality with the Assessment Module manager, as well as helper functions for storage." +category = "main" optional = false python-versions = "^3.10" files = [] @@ -43,10 +45,10 @@ develop = true [package.dependencies] fastapi = "^0.96.0" -gitpython = "^3.1.31" +gitpython = "^3.1.37" httpx = "^0.24.1" -psycopg2 = "^2.9.6" -sqlalchemy = {version = "^2.0.15", extras = ["mypy"]} +psycopg2 = "^2.9.9" +sqlalchemy = {version = "^2.0.21", extras = ["mypy"]} uvicorn = "^0.23.0" [package.source] @@ -57,6 +59,7 @@ url = "../athena" name = "certifi" version = "2023.7.22" description = "Python package for providing Mozilla's CA Bundle." +category = "main" optional = false python-versions = ">=3.6" files = [ @@ -66,107 +69,109 @@ files = [ [[package]] name = "charset-normalizer" -version = "3.3.0" +version = "3.3.1" description = "The Real First Universal Charset Detector. 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