v0.0.2

Bug fixes

• Bug fixes for read_czi function for Gray8 pixel type. The function assumed a bitrange of 28 which is not necessarily given for this pixel type. Extended range to 216.

Tutorials

• Tutorial on downstream analysis of spatialdata with scPortrait
• Tutorial on downstream analysis of spatialdata with sopa

v0.0.1

Initial support for images, shapes, and proteomics data.

Images

Supported formats include .tiff (fluorescence channels), .czi (fluorescence/brightfield), and openslide compatible brightfield images (e.g. mirax)

Shapes

Read and write functionalities for LMD-compatible .xml files.

Proteomics data

Support for DIANN reports, alphaDIA reports, and others (see alphabase).

Tutorials

Initial tutorials on plotting and interactive exploration with napari for mock and real-world data.