diff --git a/exareme2/algorithms/flower/flower_data_processing.py b/exareme2/algorithms/flower/flower_data_processing.py index db3463374..4ab92d7ed 100644 --- a/exareme2/algorithms/flower/flower_data_processing.py +++ b/exareme2/algorithms/flower/flower_data_processing.py @@ -5,7 +5,6 @@ from typing import Optional import pandas as pd -import pymonetdb import requests from pydantic import BaseModel from sklearn import preprocessing @@ -28,38 +27,29 @@ class Inputdata(BaseModel): x: Optional[List[str]] -def fetch_data(data_model, datasets, from_db=False) -> pd.DataFrame: - return ( - _fetch_data_from_db(data_model, datasets) - if from_db - else _fetch_data_from_csv(data_model, datasets) - ) +def fetch_client_data(inputdata) -> pd.DataFrame: + dataframes = [ + pd.read_csv(f"{os.getenv('DATA_PATH')}{csv_path}") + for csv_path in os.getenv("CSV_PATHS").split(",") + ] + df = pd.concat(dataframes, ignore_index=True) + df = df[df["dataset"].isin(inputdata.datasets)] + return df[inputdata.x + inputdata.y] -def _fetch_data_from_db(data_model, datasets) -> pd.DataFrame: - query = f'SELECT * FROM "{data_model}"."primary_data"' - conn = pymonetdb.connect( - hostname=os.getenv("MONETDB_IP"), - port=int(os.getenv("MONETDB_PORT")), - username=os.getenv("MONETDB_USERNAME"), - password=os.getenv("MONETDB_PASSWORD"), - database=os.getenv("MONETDB_DB"), +def fetch_server_data(inputdata) -> pd.DataFrame: + data_folder = Path( + f"{os.getenv('DATA_PATH')}/{inputdata.data_model.split(':')[0]}_v_0_1" ) - df = pd.read_sql(query, conn) - conn.close() - df = df[df["dataset"].isin(datasets)] - return df - - -def _fetch_data_from_csv(data_model, datasets) -> pd.DataFrame: - data_folder = Path(f"{os.getenv('DATA_PATH')}/{data_model.split(':')[0]}_v_0_1") print(f"Loading data from folder: {data_folder}") dataframes = [ pd.read_csv(data_folder / f"{dataset}.csv") - for dataset in datasets + for dataset in inputdata.datasets if (data_folder / f"{dataset}.csv").exists() ] - return pd.concat(dataframes, ignore_index=True) + df = pd.concat(dataframes, ignore_index=True) + df = df[df["dataset"].isin(inputdata.datasets)] + return df[inputdata.x + inputdata.y] def preprocess_data(inputdata, full_data): diff --git a/exareme2/algorithms/flower/logistic_regression/client.py b/exareme2/algorithms/flower/logistic_regression/client.py index 72620d9d4..615f02d71 100644 --- a/exareme2/algorithms/flower/logistic_regression/client.py +++ b/exareme2/algorithms/flower/logistic_regression/client.py @@ -1,4 +1,5 @@ import os +import time import warnings import flwr as fl @@ -8,7 +9,7 @@ from utils import set_initial_params from utils import set_model_params -from exareme2.algorithms.flower.flower_data_processing import fetch_data +from exareme2.algorithms.flower.flower_data_processing import fetch_client_data from exareme2.algorithms.flower.flower_data_processing import get_input from exareme2.algorithms.flower.flower_data_processing import preprocess_data @@ -39,11 +40,23 @@ def evaluate(self, parameters, config): if __name__ == "__main__": model = LogisticRegression(penalty="l2", max_iter=1, warm_start=True) inputdata = get_input() - full_data = fetch_data(inputdata.data_model, inputdata.datasets, from_db=True) + full_data = fetch_client_data(inputdata) X_train, y_train = preprocess_data(inputdata, full_data) set_initial_params(model, X_train, full_data, inputdata) client = LogisticRegressionClient(model, X_train, y_train) - fl.client.start_client( - server_address=os.environ["SERVER_ADDRESS"], client=client.to_client() - ) + max_retries = 6 + for attempt in range(max_retries): + try: + fl.client.start_client( + server_address=os.environ["SERVER_ADDRESS"], client=client.to_client() + ) + print("Connection successful on attempt", attempt + 1) + break + except Exception as e: + print(f"Connection attempt {attempt + 1} failed: {e}") + if attempt < max_retries - 1: + time.sleep(1) + else: + print("Max retries reached. Exiting.") + raise diff --git a/exareme2/algorithms/flower/logistic_regression/server.py b/exareme2/algorithms/flower/logistic_regression/server.py index 4e91a5817..67aac3bf6 100644 --- a/exareme2/algorithms/flower/logistic_regression/server.py +++ b/exareme2/algorithms/flower/logistic_regression/server.py @@ -6,7 +6,7 @@ from utils import set_initial_params from utils import set_model_params -from exareme2.algorithms.flower.flower_data_processing import fetch_data +from exareme2.algorithms.flower.flower_data_processing import fetch_server_data from exareme2.algorithms.flower.flower_data_processing import get_input from exareme2.algorithms.flower.flower_data_processing import post_result from exareme2.algorithms.flower.flower_data_processing import preprocess_data @@ -36,7 +36,7 @@ def evaluate(server_round, parameters, config): if __name__ == "__main__": model = LogisticRegression() inputdata = get_input() - full_data = fetch_data(inputdata.data_model, inputdata.datasets) + full_data = fetch_server_data(inputdata) X_train, y_train = preprocess_data(inputdata, full_data) set_initial_params(model, X_train, full_data, inputdata) strategy = fl.server.strategy.FedAvg( diff --git a/exareme2/controller/celery/tasks_handler.py b/exareme2/controller/celery/tasks_handler.py index e7ae6c104..93de95430 100644 --- a/exareme2/controller/celery/tasks_handler.py +++ b/exareme2/controller/celery/tasks_handler.py @@ -298,13 +298,14 @@ def queue_healthcheck_task( ) def start_flower_client( - self, request_id, algorithm_name, server_address + self, request_id, algorithm_name, server_address, csv_paths ) -> WorkerTaskResult: return self._queue_task( task_signature=TASK_SIGNATURES["start_flower_client"], request_id=request_id, algorithm_name=algorithm_name, server_address=server_address, + csv_paths=csv_paths, ) def start_flower_server( diff --git a/exareme2/controller/quart/endpoints.py b/exareme2/controller/quart/endpoints.py index a6a9ffbdf..1bdaba54e 100644 --- a/exareme2/controller/quart/endpoints.py +++ b/exareme2/controller/quart/endpoints.py @@ -32,7 +32,14 @@ async def get_datasets() -> dict: @algorithms.route("/datasets_locations", methods=["GET"]) async def get_datasets_locations() -> dict: - return get_worker_landscape_aggregator().get_datasets_locations().datasets_locations + return { + data_model: { + dataset: info.worker_id for dataset, info in datasets_location.items() + } + for data_model, datasets_location in get_worker_landscape_aggregator() + .get_datasets_locations() + .datasets_locations.items() + } @algorithms.route("/cdes_metadata", methods=["GET"]) diff --git a/exareme2/controller/services/flower/controller.py b/exareme2/controller/services/flower/controller.py index fcfe9cb8f..ae957f366 100644 --- a/exareme2/controller/services/flower/controller.py +++ b/exareme2/controller/services/flower/controller.py @@ -1,4 +1,5 @@ import asyncio +from typing import Dict from typing import List from exareme2.controller import logger as ctrl_logger @@ -52,10 +53,17 @@ async def exec_algorithm(self, algorithm_name, algorithm_request_dto): request_id = algorithm_request_dto.request_id context_id = UIDGenerator().get_a_uid() logger = ctrl_logger.get_request_logger(request_id) - workers_info = self._get_workers_info_by_dataset( + csv_paths_per_worker_id: Dict[ + str, List[str] + ] = self.worker_landscape_aggregator.get_csv_paths_per_worker_id( algorithm_request_dto.inputdata.data_model, algorithm_request_dto.inputdata.datasets, ) + + workers_info = [ + self.worker_landscape_aggregator.get_worker_info(worker_id) + for worker_id in csv_paths_per_worker_id + ] task_handlers = [ self._create_worker_tasks_handler(request_id, worker) for worker in workers_info @@ -80,14 +88,15 @@ async def exec_algorithm(self, algorithm_name, algorithm_request_dto): server_pid = None clients_pids = {} server_address = f"{server_ip}:{FLOWER_SERVER_PORT}" - try: server_pid = server_task_handler.start_flower_server( algorithm_name, len(task_handlers), str(server_address) ) clients_pids = { handler.start_flower_client( - algorithm_name, str(server_address) + algorithm_name, + str(server_address), + csv_paths_per_worker_id[handler.worker_id], ): handler for handler in task_handlers } @@ -130,12 +139,3 @@ async def _cleanup( def _get_workers_info_by_dataset(self, data_model, datasets) -> List[WorkerInfo]: """Retrieves worker information for those handling the specified datasets.""" - worker_ids = ( - self.worker_landscape_aggregator.get_worker_ids_with_any_of_datasets( - data_model, datasets - ) - ) - return [ - self.worker_landscape_aggregator.get_worker_info(worker_id) - for worker_id in worker_ids - ] diff --git a/exareme2/controller/services/flower/tasks_handler.py b/exareme2/controller/services/flower/tasks_handler.py index ac731dff2..eee1c73f2 100644 --- a/exareme2/controller/services/flower/tasks_handler.py +++ b/exareme2/controller/services/flower/tasks_handler.py @@ -29,9 +29,9 @@ def worker_id(self) -> str: def worker_data_address(self) -> str: return self._db_address - def start_flower_client(self, algorithm_name, server_address) -> int: + def start_flower_client(self, algorithm_name, server_address, csv_paths) -> int: return self._worker_tasks_handler.start_flower_client( - self._request_id, algorithm_name, server_address + self._request_id, algorithm_name, server_address, csv_paths ).get(timeout=self._tasks_timeout) def start_flower_server( diff --git a/exareme2/controller/services/worker_landscape_aggregator/worker_info_tasks_handler.py b/exareme2/controller/services/worker_landscape_aggregator/worker_info_tasks_handler.py index 9660b2d9e..1f11324f6 100644 --- a/exareme2/controller/services/worker_landscape_aggregator/worker_info_tasks_handler.py +++ b/exareme2/controller/services/worker_landscape_aggregator/worker_info_tasks_handler.py @@ -4,6 +4,8 @@ from exareme2.controller.celery.tasks_handler import WorkerTasksHandler from exareme2.worker_communication import CommonDataElements from exareme2.worker_communication import DataModelAttributes +from exareme2.worker_communication import DatasetInfo +from exareme2.worker_communication import DatasetsInfoPerDataModel from exareme2.worker_communication import WorkerInfo @@ -23,10 +25,11 @@ def get_worker_info_task(self) -> WorkerInfo: ).get(self._tasks_timeout) return WorkerInfo.parse_raw(result) - def get_worker_datasets_per_data_model_task(self) -> Dict[str, Dict[str, str]]: - return self._worker_tasks_handler.queue_worker_datasets_per_data_model_task( + def get_worker_datasets_per_data_model_task(self) -> DatasetsInfoPerDataModel: + result = self._worker_tasks_handler.queue_worker_datasets_per_data_model_task( self._request_id ).get(self._tasks_timeout) + return DatasetsInfoPerDataModel.parse_raw(result) def get_data_model_cdes_task(self, data_model: str) -> CommonDataElements: result = self._worker_tasks_handler.queue_data_model_cdes_task( diff --git a/exareme2/controller/services/worker_landscape_aggregator/worker_landscape_aggregator.py b/exareme2/controller/services/worker_landscape_aggregator/worker_landscape_aggregator.py index da12e24cf..f12b71fc0 100644 --- a/exareme2/controller/services/worker_landscape_aggregator/worker_landscape_aggregator.py +++ b/exareme2/controller/services/worker_landscape_aggregator/worker_landscape_aggregator.py @@ -28,6 +28,8 @@ from exareme2.worker_communication import CommonDataElement from exareme2.worker_communication import CommonDataElements from exareme2.worker_communication import DataModelAttributes +from exareme2.worker_communication import DatasetInfo +from exareme2.worker_communication import DatasetsInfoPerDataModel from exareme2.worker_communication import WorkerInfo from exareme2.worker_communication import WorkerRole @@ -68,6 +70,11 @@ class DataModelsAttributes(ImmutableBaseModel): data_models_attributes: Optional[Dict[str, DataModelAttributes]] = {} +class DatasetLocation(ImmutableBaseModel): + worker_id: str + csv_path: str + + class DatasetsLocations(ImmutableBaseModel): """ A dictionary representation of the locations of each dataset in the federation. @@ -75,7 +82,7 @@ class DatasetsLocations(ImmutableBaseModel): Values are Dictionaries of datasets and their locations. """ - datasets_locations: Optional[Dict[str, Dict[str, str]]] = {} + datasets_locations: Optional[Dict[str, Dict[str, DatasetLocation]]] = {} class DataModelRegistry(ImmutableBaseModel): @@ -122,6 +129,28 @@ def dataset_exists(self, data_model: str, dataset: str) -> bool: and dataset in self.datasets_locations.datasets_locations[data_model] ) + def get_csv_paths_per_worker_id( + self, data_model: str, datasets: List[str] + ) -> Dict[str, List[str]]: + if not self.data_model_exists(data_model): + return {} + csv_paths_per_worker_id = {} + datasets_info = [ + dataset_info + for dataset, dataset_info in self.datasets_locations.datasets_locations[ + data_model + ].items() + if dataset in datasets + ] + for dataset_info in datasets_info: + if dataset_info.worker_id not in csv_paths_per_worker_id: + csv_paths_per_worker_id[dataset_info.worker_id] = [] + csv_paths_per_worker_id[dataset_info.worker_id].append( + dataset_info.csv_path + ) + + return csv_paths_per_worker_id + def get_worker_ids_with_any_of_datasets( self, data_model: str, datasets: List[str] ) -> List[str]: @@ -129,7 +158,7 @@ def get_worker_ids_with_any_of_datasets( return [] local_workers_with_datasets = [ - self.datasets_locations.datasets_locations[data_model][dataset] + self.datasets_locations.datasets_locations[data_model][dataset].worker_id for dataset in self.datasets_locations.datasets_locations[data_model] if dataset in datasets ] @@ -161,7 +190,7 @@ def get_worker_specific_datasets( for dataset in self.datasets_locations.datasets_locations[data_model] if dataset in wanted_datasets and worker_id - == self.datasets_locations.datasets_locations[data_model][dataset] + == self.datasets_locations.datasets_locations[data_model][dataset].worker_id ] return datasets_in_worker @@ -219,6 +248,16 @@ class DatasetsLabels(ImmutableBaseModel): datasets_labels: Dict[str, str] +class DatasetsInfo(ImmutableBaseModel): + """ + A dictionary representation of a dataset's information. + Key values are the names of the datasets. + Values are the info (label and csv_path) of the datasets. + """ + + datasets_info: Dict[str, DatasetInfo] + + class DatasetsLabelsPerDataModel(ImmutableBaseModel): """ Key values are the names of the data_models. @@ -233,7 +272,7 @@ class DataModelMetadata(ImmutableBaseModel): A representation of a data model's Metadata datasets info, cdes and attributes for a specific data model """ - datasets_labels: DatasetsLabels + datasets_info: DatasetsInfo cdes: Optional[CommonDataElements] attributes: Optional[DataModelAttributes] @@ -382,7 +421,7 @@ def _get_workers_info(self, workers_socket_addr: List[str]) -> List[WorkerInfo]: def _get_worker_datasets_per_data_model( self, worker_queue_addr: str, - ) -> Dict[str, Dict[str, str]]: + ) -> DatasetsInfoPerDataModel: tasks_handler = WorkerInfoTasksHandler( worker_queue_addr=worker_queue_addr, tasks_timeout=self._worker_info_tasks_timeout, @@ -507,6 +546,11 @@ def data_model_exists(self, data_model: str) -> bool: def dataset_exists(self, data_model: str, dataset: str) -> bool: return self._registries.data_model_registry.dataset_exists(data_model, dataset) + def get_csv_paths_per_worker_id(self, data_model: str, datasets: List[str]): + return self._registries.data_model_registry.get_csv_paths_per_worker_id( + data_model, datasets + ) + def get_worker_ids_with_any_of_datasets( self, data_model: str, datasets: List[str] ) -> List[str]: @@ -561,7 +605,10 @@ def _get_data_models_metadata_per_worker( ) if datasets_per_data_model: worker_socket_addr = _get_worker_socket_addr(worker_info) - for data_model, datasets in datasets_per_data_model.items(): + for ( + data_model, + datasets_info, + ) in datasets_per_data_model.datasets_info_per_data_model.items(): cdes = self._get_worker_cdes(worker_socket_addr, data_model) attributes = self._get_data_model_attributes( worker_socket_addr, data_model @@ -569,7 +616,7 @@ def _get_data_models_metadata_per_worker( cdes = cdes if cdes else None attributes = attributes if attributes else None data_models_metadata[data_model] = DataModelMetadata( - datasets_labels=DatasetsLabels(datasets_labels=datasets), + datasets_info=DatasetsInfo(datasets_info=datasets_info), cdes=cdes, attributes=attributes, ) @@ -625,57 +672,94 @@ def _aggregate_datasets_locations_and_labels( 1. DatasetsLocations 2. DatasetsLabelsPerDataModel """ - datasets_locations = {} + datasets_location_per_data_model = {} datasets_labels = {} + for ( worker_id, data_models_metadata, ) in data_models_metadata_per_worker.data_models_metadata_per_worker.items(): + _process_worker_data_models( + worker_id, + data_models_metadata, + datasets_location_per_data_model, + datasets_labels, + ) + + datasets_location_per_data_model_without_duplicates = _remove_duplicates_and_log( + datasets_location_per_data_model, datasets_labels, logger + ) + + return DatasetsLocations( + datasets_locations=datasets_location_per_data_model_without_duplicates + ), DatasetsLabelsPerDataModel(datasets_labels_per_data_model=datasets_labels) + + +def _process_worker_data_models( + worker_id: str, + data_models_metadata, + datasets_location_per_data_model: Dict[str, Dict[str, List[DatasetLocation]]], + datasets_labels: Dict[str, DatasetsLabels], +): + for ( + data_model, + data_model_metadata, + ) in data_models_metadata.data_models_metadata.items(): + current_labels = ( + datasets_labels[data_model].datasets_labels + if data_model in datasets_labels + else {} + ) + current_datasets = ( + datasets_location_per_data_model[data_model] + if data_model in datasets_location_per_data_model + else {} + ) + for ( - data_model, - data_model_metadata, - ) in data_models_metadata.data_models_metadata.items(): - current_labels = ( - datasets_labels[data_model].datasets_labels - if data_model in datasets_labels - else {} - ) - current_datasets = ( - datasets_locations[data_model] - if data_model in datasets_locations - else {} + dataset_name, + dataset_info, + ) in data_model_metadata.datasets_info.datasets_info.items(): + current_labels[dataset_name] = dataset_info.label + dataset_location = DatasetLocation( + worker_id=worker_id, csv_path=dataset_info.csv_path ) - - for ( - dataset_name, - dataset_label, - ) in data_model_metadata.datasets_labels.datasets_labels.items(): - current_labels[dataset_name] = dataset_label - - if dataset_name in current_datasets: - current_datasets[dataset_name].append(worker_id) - else: - current_datasets[dataset_name] = [worker_id] - - datasets_labels[data_model] = DatasetsLabels(datasets_labels=current_labels) - datasets_locations[data_model] = current_datasets - - datasets_locations_without_duplicates = {} - for data_model, dataset_locations in datasets_locations.items(): - datasets_locations_without_duplicates[data_model] = {} - - for dataset, worker_ids in dataset_locations.items(): - if len(worker_ids) == 1: - datasets_locations_without_duplicates[data_model][dataset] = worker_ids[ - 0 - ] + if dataset_name in current_datasets: + current_datasets[dataset_name].append(dataset_location) + else: + current_datasets[dataset_name] = [dataset_location] + + datasets_labels[data_model] = DatasetsLabels(datasets_labels=current_labels) + datasets_location_per_data_model[data_model] = current_datasets + + +def _remove_duplicates_and_log( + datasets_location_per_data_model: Dict[str, Dict[str, List[DatasetLocation]]], + datasets_labels: Dict[str, DatasetsLabels], + logger, +) -> Dict[str, Dict[str, DatasetLocation]]: + datasets_location_per_data_model_without_duplicates = {} + for data_model, dataset_locations in datasets_location_per_data_model.items(): + datasets_location_per_data_model_without_duplicates[data_model] = {} + + for dataset, datasets_locations in dataset_locations.items(): + if len(datasets_locations) == 1: + datasets_location_per_data_model_without_duplicates[data_model][ + dataset + ] = datasets_locations[0] else: del datasets_labels[data_model].datasets_labels[dataset] - _log_duplicated_dataset(worker_ids, data_model, dataset, logger) + _log_duplicated_dataset( + [ + dataset_location.worker_id + for dataset_location in datasets_locations + ], + data_model, + dataset, + logger, + ) - return DatasetsLocations( - datasets_locations=datasets_locations_without_duplicates - ), DatasetsLabelsPerDataModel(datasets_labels_per_data_model=datasets_labels) + return datasets_location_per_data_model_without_duplicates def _aggregate_data_models_cdes( @@ -873,7 +957,7 @@ def _log_datasets_added(old_datasets_locations, new_datasets_locations, logger): data_model, dataset, logger, - new_datasets_locations[data_model][dataset], + new_datasets_locations[data_model][dataset].worker_id, ) @@ -887,7 +971,7 @@ def _log_datasets_removed(old_datasets_locations, new_datasets_locations, logger data_model, dataset, logger, - old_datasets_locations[data_model][dataset], + old_datasets_locations[data_model][dataset].worker_id, ) diff --git a/exareme2/worker/exareme2/views/views_service.py b/exareme2/worker/exareme2/views/views_service.py index b13ecb88b..0a7e5b16e 100644 --- a/exareme2/worker/exareme2/views/views_service.py +++ b/exareme2/worker/exareme2/views/views_service.py @@ -6,9 +6,7 @@ from exareme2.worker.exareme2.views import views_db from exareme2.worker.utils.logger import initialise_logger from exareme2.worker.worker_info.worker_info_db import get_data_models -from exareme2.worker.worker_info.worker_info_db import ( - get_dataset_code_per_dataset_label, -) +from exareme2.worker.worker_info.worker_info_db import get_dataset_per_dataset_info from exareme2.worker_communication import DataModelUnavailable from exareme2.worker_communication import DatasetUnavailable from exareme2.worker_communication import TableInfo @@ -184,7 +182,7 @@ def _validate_data_model_and_datasets_exist(data_model: str, datasets: List[str] if data_model not in get_data_models(): raise DataModelUnavailable(worker_config.identifier, data_model) - available_datasets = get_dataset_code_per_dataset_label(data_model) + available_datasets = get_dataset_per_dataset_info(data_model) for dataset in datasets: if dataset not in available_datasets: raise DatasetUnavailable(worker_config.identifier, dataset) diff --git a/exareme2/worker/flower/starter/flower_api.py b/exareme2/worker/flower/starter/flower_api.py index 0d300eb1e..c5a428074 100644 --- a/exareme2/worker/flower/starter/flower_api.py +++ b/exareme2/worker/flower/starter/flower_api.py @@ -4,9 +4,11 @@ @shared_task -def start_flower_client(request_id: str, algorithm_name, server_address) -> int: +def start_flower_client( + request_id: str, algorithm_name, server_address, csv_paths +) -> int: return flower_service.start_flower_client( - request_id, algorithm_name, server_address + request_id, algorithm_name, server_address, csv_paths ) diff --git a/exareme2/worker/flower/starter/flower_service.py b/exareme2/worker/flower/starter/flower_service.py index 0e848e12b..2a3ad78c1 100644 --- a/exareme2/worker/flower/starter/flower_service.py +++ b/exareme2/worker/flower/starter/flower_service.py @@ -5,18 +5,16 @@ @initialise_logger -def start_flower_client(request_id: str, algorithm_name, server_address) -> int: +def start_flower_client( + request_id: str, algorithm_name, server_address, csv_paths +) -> int: env_vars = { - "MONETDB_IP": worker_config.monetdb.ip, - "MONETDB_PORT": worker_config.monetdb.port, - "MONETDB_USERNAME": worker_config.monetdb.local_username, - "MONETDB_PASSWORD": worker_config.monetdb.local_password, - "MONETDB_DB": worker_config.monetdb.database, "SERVER_ADDRESS": server_address, "NUMBER_OF_CLIENTS": worker_config.monetdb.database, "CONTROLLER_IP": worker_config.controller.ip, "CONTROLLER_PORT": worker_config.controller.port, "DATA_PATH": worker_config.data_path, + "CSV_PATHS": ",".join(csv_paths), } process = FlowerProcess(f"{algorithm_name}/client.py", env_vars=env_vars) logger = get_logger() diff --git a/exareme2/worker/worker_info/worker_info_api.py b/exareme2/worker/worker_info/worker_info_api.py index 50ef98e48..c646e8af8 100644 --- a/exareme2/worker/worker_info/worker_info_api.py +++ b/exareme2/worker/worker_info/worker_info_api.py @@ -1,5 +1,3 @@ -from typing import Dict - from celery import shared_task from exareme2.worker.worker_info import worker_info_service @@ -11,8 +9,8 @@ def get_worker_info(request_id: str) -> str: @shared_task -def get_worker_datasets_per_data_model(request_id: str) -> Dict[str, Dict[str, str]]: - return worker_info_service.get_worker_datasets_per_data_model(request_id) +def get_worker_datasets_per_data_model(request_id: str) -> str: + return worker_info_service.get_worker_datasets_per_data_model(request_id).json() @shared_task diff --git a/exareme2/worker/worker_info/worker_info_db.py b/exareme2/worker/worker_info/worker_info_db.py index 30887ae3f..4ea53188c 100644 --- a/exareme2/worker/worker_info/worker_info_db.py +++ b/exareme2/worker/worker_info/worker_info_db.py @@ -8,6 +8,7 @@ from exareme2.worker_communication import CommonDataElement from exareme2.worker_communication import CommonDataElements from exareme2.worker_communication import DataModelAttributes +from exareme2.worker_communication import DatasetInfo HEALTHCHECK_VALIDATION_STRING = "HEALTHCHECK" @@ -35,7 +36,7 @@ def get_data_models() -> List[str]: @sql_injection_guard(data_model=is_datamodel) -def get_dataset_code_per_dataset_label(data_model: str) -> Dict[str, str]: +def get_dataset_per_dataset_info(data_model: str) -> Dict[str, DatasetInfo]: """ Retrieves the enabled key-value pair of code and label, for a specific data_model. @@ -48,7 +49,7 @@ def get_dataset_code_per_dataset_label(data_model: str) -> Dict[str, str]: datasets_rows = db_execute_and_fetchall( f""" - SELECT code, label + SELECT code, label, csv_path FROM "mipdb_metadata"."datasets" WHERE data_model_id = ( @@ -60,7 +61,10 @@ def get_dataset_code_per_dataset_label(data_model: str) -> Dict[str, str]: AND status = 'ENABLED' """ ) - datasets = {code: label for code, label in datasets_rows} + datasets = { + code: DatasetInfo(label=label, csv_path=csv_path) + for code, label, csv_path in datasets_rows + } return datasets diff --git a/exareme2/worker/worker_info/worker_info_service.py b/exareme2/worker/worker_info/worker_info_service.py index 6dd03a11c..9fd37a775 100644 --- a/exareme2/worker/worker_info/worker_info_service.py +++ b/exareme2/worker/worker_info/worker_info_service.py @@ -5,11 +5,11 @@ from exareme2.worker.worker_info import worker_info_db from exareme2.worker.worker_info.worker_info_db import check_database_connection from exareme2.worker.worker_info.worker_info_db import get_data_models -from exareme2.worker.worker_info.worker_info_db import ( - get_dataset_code_per_dataset_label, -) +from exareme2.worker.worker_info.worker_info_db import get_dataset_per_dataset_info from exareme2.worker_communication import CommonDataElements from exareme2.worker_communication import DataModelAttributes +from exareme2.worker_communication import DatasetInfo +from exareme2.worker_communication import DatasetsInfoPerDataModel from exareme2.worker_communication import WorkerInfo @@ -33,7 +33,7 @@ def get_worker_info(request_id: str) -> WorkerInfo: @initialise_logger -def get_worker_datasets_per_data_model(request_id: str) -> Dict[str, Dict[str, str]]: +def get_worker_datasets_per_data_model(request_id: str) -> DatasetsInfoPerDataModel: """ Parameters ---------- @@ -41,13 +41,15 @@ def get_worker_datasets_per_data_model(request_id: str) -> Dict[str, Dict[str, s The identifier for the logging Returns ------ - Dict[str, Dict[str, str]] - A dictionary with key data model and value a list of pairs (dataset code and dataset label) + DatasetsInfoPerDataModel + A dictionary with key data model and value a dictionary with keys dataset and value each corresponding Info (label, csv_path) """ - return { - data_model: get_dataset_code_per_dataset_label(data_model) - for data_model in get_data_models() - } + return DatasetsInfoPerDataModel( + datasets_info_per_data_model={ + data_model: get_dataset_per_dataset_info(data_model) + for data_model in get_data_models() + } + ) @initialise_logger diff --git a/exareme2/worker_communication.py b/exareme2/worker_communication.py index 652c01bb7..b6dc0ee40 100644 --- a/exareme2/worker_communication.py +++ b/exareme2/worker_communication.py @@ -258,6 +258,15 @@ class DataModelAttributes(ImmutableBaseModel): properties: Dict +class DatasetInfo(ImmutableBaseModel): + label: str + csv_path: str + + +class DatasetsInfoPerDataModel(ImmutableBaseModel): + datasets_info_per_data_model: Dict[str, Dict[str, DatasetInfo]] + + class CommonDataElement(ImmutableBaseModel): code: str label: str diff --git a/mipdb/Dockerfile b/mipdb/Dockerfile index 86cfdbc99..69cdcf190 100644 --- a/mipdb/Dockerfile +++ b/mipdb/Dockerfile @@ -29,7 +29,7 @@ WORKDIR $DATA_PATH ####################################################### # Installing dependencies ####################################################### -RUN pip install mipdb==2.4.7 # Must be updated together with pyproject.toml +RUN pip install mipdb==2.4.9 # Must be updated together with pyproject.toml RUN pip install click==8.1.2 RUN pip install pymonetdb==1.6.3 # Must be updated together with pyproject.toml @@ -60,4 +60,4 @@ VOLUME $CREDENTIALS_CONFIG_FOLDER COPY mipdb/bootstrap.sh /home/bootstrap.sh RUN chmod 775 /home/bootstrap.sh -CMD ["sh", "-c", "/home/bootstrap.sh"] \ No newline at end of file +CMD ["sh", "-c", "/home/bootstrap.sh"] diff --git a/poetry.lock b/poetry.lock index c934a312b..d078173d2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,27 +13,27 @@ files = [ [[package]] name = "amqp" -version = "5.1.1" +version = "5.2.0" description = "Low-level AMQP client for Python (fork of amqplib)." optional = false python-versions = ">=3.6" files = [ - 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Dockerfile +mipdb = "2.4.9" # Must be updated together with mipdb Dockerfile [tool.pytest.ini_options] markers = [ diff --git a/tasks.py b/tasks.py index 126b96387..82fb6c103 100644 --- a/tasks.py +++ b/tasks.py @@ -442,7 +442,7 @@ def load_data(c, use_sockets=False, port=None): f"Loading the folder '{TEST_DATA_FOLDER}' in MonetDB at port {local_worker_ports[0]}...", Level.HEADER, ) - run(c, cmd) + run(c, cmd, env={"DATA_PATH": TEST_DATA_FOLDER}) return # Load the test data folder into the dbs @@ -479,7 +479,7 @@ def load_data(c, use_sockets=False, port=None): Level.HEADER, ) cmd = f"poetry run mipdb add-dataset {csv} -d {data_model_code} -v {data_model_version} --copy_from_file {not use_sockets} {get_monetdb_configs_in_mipdb_format(port)}" - run(c, cmd) + run(c, cmd, env={"DATA_PATH": TEST_DATA_FOLDER}) # Load the data model's remaining csvs in the rest of the workers with round-robin fashion remaining_csvs = sorted( @@ -500,7 +500,7 @@ def load_data(c, use_sockets=False, port=None): Level.HEADER, ) cmd = f"poetry run mipdb add-dataset {csv} -d {data_model_code} -v {data_model_version} --copy_from_file {not use_sockets} {get_monetdb_configs_in_mipdb_format(port)}" - run(c, cmd) + run(c, cmd, env={"DATA_PATH": TEST_DATA_FOLDER}) def get_monetdb_configs_in_mipdb_format(port): @@ -1142,14 +1142,23 @@ def reload_udfio(c, db): run(c, command) -def run(c, cmd, attach_=False, wait=True, warn=False, raise_error=False, show_ok=True): +def run( + c, + cmd, + attach_=False, + wait=True, + warn=False, + raise_error=False, + show_ok=True, + env=None, +): if attach_: - c.run(cmd, pty=True) + c.run(cmd, pty=True, env=env) return if not wait: # TODO disown=True will make c.run(..) return immediately - c.run(cmd, disown=True) + c.run(cmd, disown=True, env=env) # TODO wait is False to get in here # nevertheless, it will wait (sleep) for 4 seconds here, why?? spin_wheel(time=4) @@ -1158,7 +1167,7 @@ def run(c, cmd, attach_=False, wait=True, warn=False, raise_error=False, show_ok return # TODO this is supposed to run when wait=True, yet asynchronous=True - promise = c.run(cmd, asynchronous=True, warn=warn) + promise = c.run(cmd, asynchronous=True, warn=warn, env=env) # TODO and then it blocks here, what is the point of asynchronous=True? spin_wheel(promise=promise) stderr = promise.runner.stderr diff --git a/tests/standalone_tests/controller/services/api/test_validate_algorithm_request.py b/tests/standalone_tests/controller/services/api/test_validate_algorithm_request.py index 35a31f844..53dd25416 100644 --- a/tests/standalone_tests/controller/services/api/test_validate_algorithm_request.py +++ b/tests/standalone_tests/controller/services/api/test_validate_algorithm_request.py @@ -27,6 +27,9 @@ from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( DataModelsCDES, ) +from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( + DatasetLocation, +) from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( DatasetsLocations, ) @@ -115,10 +118,21 @@ def worker_landscape_aggregator(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model_with_all_cde_types:0.1": { - "sample_dataset1": "sample_worker", - "sample_dataset2": "sample_worker", + "sample_dataset1": DatasetLocation( + worker_id="sample_worker", + csv_path="/opt/data/sample_dataset1.csv", + ), + "sample_dataset2": DatasetLocation( + worker_id="sample_worker", + csv_path="/opt/data/sample_dataset2.csv", + ), + }, + "sample_data_model:0.1": { + "sample_dataset": DatasetLocation( + worker_id="sample_worker", + csv_path="/opt/data/sample_dataset.csv", + ) }, - "sample_data_model:0.1": {"sample_dataset": "sample_worker"}, } ), ) diff --git a/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_data_model_registry.py b/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_data_model_registry.py index 3ab40eadc..d46221102 100644 --- a/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_data_model_registry.py +++ b/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_data_model_registry.py @@ -10,6 +10,9 @@ from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( DataModelsCDES, ) +from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( + DatasetLocation, +) from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( DatasetsLocations, ) @@ -23,20 +26,44 @@ def mocked_datasets_locations(): yield DatasetsLocations( datasets_locations={ "tbi:0.1": { - "dummy_tbi0": "localworker1", - "dummy_tbi1": "localworker2", - "dummy_tbi3": "localworker2", + "dummy_tbi0": DatasetLocation( + worker_id="localworker1", csv_path="/opt/data/dummy_tbi0.csv" + ), + "dummy_tbi1": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/dummy_tbi1.csv" + ), + "dummy_tbi3": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/dummy_tbi3.csv" + ), }, "dementia:0.1": { - "ppmi0": "localworker1", - "ppmi1": "localworker2", - "ppmi3": "localworker2", - "edsd0": "localworker1", - "edsd1": "localworker2", - "edsd3": "localworker2", - "desd-synthdata0": "localworker1", - "desd-synthdata1": "localworker2", - "desd-synthdata3": "localworker2", + "ppmi0": DatasetLocation( + worker_id="localworker1", csv_path="/opt/data/ppmi0.csv" + ), + "ppmi1": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/ppmi1.csv" + ), + "ppmi3": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/ppmi3.csv" + ), + "edsd0": DatasetLocation( + worker_id="localworker1", csv_path="/opt/data/edsd0.csv" + ), + "edsd1": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/edsd1.csv" + ), + "edsd3": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/edsd3.csv" + ), + "synthdata0": DatasetLocation( + worker_id="localworker1", csv_path="/opt/data/synthdata0.csv" + ), + "synthdata1": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/synthdata1.csv" + ), + "synthdata2": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/synthdata2.csv" + ), }, } ) diff --git a/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_federation_info_script.py b/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_federation_info_script.py index e8578da74..74e302387 100644 --- a/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_federation_info_script.py +++ b/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_federation_info_script.py @@ -7,6 +7,9 @@ from exareme2 import AttrDict from exareme2.controller.federation_info_logs import log_experiment_execution from exareme2.controller.logger import init_logger +from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( + DatasetLocation, +) from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( _log_data_model_changes, ) @@ -97,8 +100,20 @@ def test_show_controller_audit_entries(patch_controller_logger_config, capsys): logger=logger, ) _log_dataset_changes( - old_datasets_locations={"dementia:0.1": {"edsd": "localworker1"}}, - new_datasets_locations={"tbi:0.1": {"dummy_tbi": "localworker2"}}, + old_datasets_locations={ + "dementia:0.1": { + "edsd": DatasetLocation( + worker_id="localworker1", csv_path="/opt/data/edsd.csv" + ) + } + }, + new_datasets_locations={ + "tbi:0.1": { + "dummy_tbi": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/dummy_tbi.csv" + ) + } + }, logger=logger, ) log_experiment_execution( diff --git a/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_worker_landscape_aggregator.py b/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_worker_landscape_aggregator.py index 8d4039e2b..c7a284469 100644 --- a/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_worker_landscape_aggregator.py +++ b/tests/standalone_tests/controller/services/worker_landscape_agreggator/test_worker_landscape_aggregator.py @@ -21,7 +21,10 @@ DataModelsMetadataPerWorker, ) from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( - DatasetsLabels, + DatasetLocation, +) +from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( + DatasetsInfo, ) from exareme2.controller.services.worker_landscape_aggregator.worker_landscape_aggregator import ( DatasetsLocations, @@ -35,6 +38,7 @@ from exareme2.worker_communication import CommonDataElement from exareme2.worker_communication import CommonDataElements from exareme2.worker_communication import DataModelAttributes +from exareme2.worker_communication import DatasetInfo from tests.standalone_tests.conftest import RABBITMQ_LOCALWORKERTMP_ADDR @@ -80,10 +84,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -108,9 +118,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -138,10 +151,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -170,10 +189,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -198,9 +223,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -290,16 +318,40 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:1": { - "dataset1": "localworker1", - "dataset2": "localworker1", - "dataset3": "localworker2", - "dataset4": "localworker2", - "dataset5": "localworker3", - "dataset6": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset2.csv", + ), + "dataset3": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset4.csv", + ), + "dataset5": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset6.csv", + ), }, "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -312,10 +364,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=None, @@ -325,9 +383,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -355,10 +416,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -387,10 +454,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -415,9 +488,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -492,14 +568,32 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:1": { - "dataset3": "localworker2", - "dataset4": "localworker2", - "dataset5": "localworker3", - "dataset6": "localworker3", + "dataset3": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset4.csv", + ), + "dataset5": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset6.csv", + ), }, "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -512,10 +606,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -549,9 +649,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -579,10 +682,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -620,10 +729,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -657,9 +772,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -715,8 +833,14 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -729,7 +853,7 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels(datasets_labels={}), + datasets_info=DatasetsInfo(datasets_info={}), cdes=CommonDataElements( values={ "dataset": CommonDataElement( @@ -752,7 +876,7 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels(datasets_labels={}), + datasets_info=DatasetsInfo(datasets_info={}), cdes=CommonDataElements( values={ "dataset": CommonDataElement( @@ -778,7 +902,7 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels(datasets_labels={}), + datasets_info=DatasetsInfo(datasets_info={}), cdes=CommonDataElements( values={ "dataset": CommonDataElement( @@ -805,7 +929,7 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels(datasets_labels={}), + datasets_info=DatasetsInfo(datasets_info={}), cdes=CommonDataElements( values={ "dataset": CommonDataElement( @@ -828,7 +952,7 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels(datasets_labels={}), + datasets_info=DatasetsInfo(datasets_info={}), cdes=CommonDataElements( values={ "dataset": CommonDataElement( @@ -919,10 +1043,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -947,9 +1077,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -977,10 +1110,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1005,9 +1144,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1035,10 +1177,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1063,9 +1211,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1093,10 +1244,16 @@ def get_parametrization_cases(): "localworker4": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1121,9 +1278,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1199,10 +1359,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1227,9 +1393,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1257,10 +1426,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -1289,10 +1464,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -1317,9 +1498,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1393,12 +1577,30 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:1": { - "dataset1": "localworker1", - "dataset2": "localworker1", - "dataset3": "localworker2", - "dataset4": "localworker2", - "dataset5": "localworker3", - "dataset6": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset2.csv", + ), + "dataset3": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset4.csv", + ), + "dataset5": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset6.csv", + ), }, "data_model:2": {}, } @@ -1412,10 +1614,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1449,9 +1657,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1479,10 +1690,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -1511,10 +1728,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -1539,9 +1762,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1597,8 +1823,14 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -1611,10 +1843,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1648,9 +1886,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1678,10 +1919,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -1710,10 +1957,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -1738,9 +1991,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1796,8 +2052,14 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -1810,10 +2072,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -1841,9 +2109,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -1871,10 +2142,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -1906,10 +2183,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -1934,9 +2217,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -2027,16 +2313,40 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:1": { - "dataset1": "localworker1", - "dataset2": "localworker1", - "dataset3": "localworker2", - "dataset4": "localworker2", - "dataset5": "localworker3", - "dataset6": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset2.csv", + ), + "dataset3": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset4.csv", + ), + "dataset5": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset6.csv", + ), }, "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -2049,10 +2359,16 @@ def get_parametrization_cases(): "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -2080,9 +2396,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", + csv_path="/opt/data/dataset1.csv", + ), } ), cdes=CommonDataElements( @@ -2110,10 +2429,16 @@ def get_parametrization_cases(): "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetInfo( + label="DATASET4", + csv_path="/opt/data/dataset4.csv", + ), } ), cdes=CommonDataElements( @@ -2145,10 +2470,16 @@ def get_parametrization_cases(): "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetInfo( + label="DATASET6", + csv_path="/opt/data/dataset6.csv", + ), } ), cdes=CommonDataElements( @@ -2173,9 +2504,12 @@ def get_parametrization_cases(): ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", + csv_path="/opt/data/dataset2.csv", + ), } ), cdes=CommonDataElements( @@ -2266,16 +2600,40 @@ def get_parametrization_cases(): datasets_locations=DatasetsLocations( datasets_locations={ "data_model:1": { - "dataset1": "localworker1", - "dataset2": "localworker1", - "dataset3": "localworker2", - "dataset4": "localworker2", - "dataset5": "localworker3", - "dataset6": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset2.csv", + ), + "dataset3": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset3.csv", + ), + "dataset4": DatasetLocation( + worker_id="localworker2", + csv_path="/opt/data/dataset4.csv", + ), + "dataset5": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset5.csv", + ), + "dataset6": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset6.csv", + ), }, "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", + csv_path="/opt/data/dataset1.csv", + ), + "dataset2": DatasetLocation( + worker_id="localworker3", + csv_path="/opt/data/dataset2.csv", + ), }, } ), @@ -2317,10 +2675,14 @@ def test_data_model_registry_missing_data_model_attributes(worker_landscape_aggr "localworker1": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", csv_path="/opt/data/dataset1.csv" + ), + "dataset2": DatasetInfo( + label="DATASET2", csv_path="/opt/data/dataset2.csv" + ), } ), cdes=CommonDataElements( @@ -2342,9 +2704,11 @@ def test_data_model_registry_missing_data_model_attributes(worker_landscape_aggr attributes=None, ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset1": "DATASET1", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset1": DatasetInfo( + label="DATASET1", csv_path="/opt/data/dataset1.csv" + ), } ), cdes=CommonDataElements( @@ -2372,10 +2736,14 @@ def test_data_model_registry_missing_data_model_attributes(worker_landscape_aggr "localworker2": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset3": "DATASET3", - "dataset4": "DATASET4", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset3": DatasetInfo( + label="DATASET3", csv_path="/opt/data/dataset3.csv" + ), + "dataset4": DatasetInfo( + label="DATASET4", csv_path="/opt/data/dataset4.csv" + ), } ), cdes=CommonDataElements( @@ -2404,10 +2772,14 @@ def test_data_model_registry_missing_data_model_attributes(worker_landscape_aggr "localworker3": DataModelsMetadata( data_models_metadata={ "data_model:1": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset5": "DATASET5", - "dataset6": "DATASET6", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset5": DatasetInfo( + label="DATASET5", csv_path="/opt/data/dataset5.csv" + ), + "dataset6": DatasetInfo( + label="DATASET6", csv_path="/opt/data/dataset6.csv" + ), } ), cdes=CommonDataElements( @@ -2432,9 +2804,11 @@ def test_data_model_registry_missing_data_model_attributes(worker_landscape_aggr ), ), "data_model:2": DataModelMetadata( - datasets_labels=DatasetsLabels( - datasets_labels={ - "dataset2": "DATASET2", + datasets_info=DatasetsInfo( + datasets_info={ + "dataset2": DatasetInfo( + label="DATASET2", csv_path="/opt/data/dataset2.csv" + ), } ), cdes=CommonDataElements( @@ -2523,14 +2897,26 @@ def test_data_model_registry_missing_data_model_attributes(worker_landscape_aggr datasets_locations=DatasetsLocations( datasets_locations={ "data_model:1": { - "dataset3": "localworker2", - "dataset4": "localworker2", - "dataset5": "localworker3", - "dataset6": "localworker3", + "dataset3": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/dataset3.csv" + ), + "dataset4": DatasetLocation( + worker_id="localworker2", csv_path="/opt/data/dataset4.csv" + ), + "dataset5": DatasetLocation( + worker_id="localworker3", csv_path="/opt/data/dataset5.csv" + ), + "dataset6": DatasetLocation( + worker_id="localworker3", csv_path="/opt/data/dataset6.csv" + ), }, "data_model:2": { - "dataset1": "localworker1", - "dataset2": "localworker3", + "dataset1": DatasetLocation( + worker_id="localworker1", csv_path="/opt/data/dataset1.csv" + ), + "dataset2": DatasetLocation( + worker_id="localworker3", csv_path="/opt/data/dataset2.csv" + ), }, } ), diff --git a/tests/standalone_tests/worker/worker_info/test_get_datasets_per_data_model.py b/tests/standalone_tests/worker/worker_info/test_get_datasets_per_data_model.py index 2079e0dad..865296f52 100644 --- a/tests/standalone_tests/worker/worker_info/test_get_datasets_per_data_model.py +++ b/tests/standalone_tests/worker/worker_info/test_get_datasets_per_data_model.py @@ -2,6 +2,7 @@ import pytest +from exareme2.worker_communication import DatasetsInfoPerDataModel from tests.standalone_tests.conftest import TASKS_TIMEOUT from tests.standalone_tests.controller.workers_communication_helper import ( get_celery_task_signature, @@ -22,7 +23,7 @@ def setup_data_table_in_db(datasets_per_data_model, cursor): cursor.execute(sql_query) for dataset_name in datasets_per_data_model[data_model]: dataset_id += 1 - sql_query = f"""INSERT INTO "mipdb_metadata"."datasets" VALUES ({dataset_id}, {data_model_id}, '{dataset_name}', '{label_identifier}', 'ENABLED', null);""" + sql_query = f"""INSERT INTO "mipdb_metadata"."datasets" VALUES ({dataset_id}, {data_model_id}, '{dataset_name}', '{label_identifier}', 'ENABLED', '/opt/data/{dataset_name}.csv', null);""" cursor.execute(sql_query) @@ -94,12 +95,14 @@ def test_get_worker_datasets_per_data_model( request_id=request_id, ) - datasets_per_data_model = globalworker_celery_app.get_result( - async_result=async_result, - logger=StdOutputLogger(), - timeout=TASKS_TIMEOUT, + datasets_info_per_data_model = DatasetsInfoPerDataModel.parse_raw( + globalworker_celery_app.get_result( + async_result=async_result, + logger=StdOutputLogger(), + timeout=TASKS_TIMEOUT, + ) ) - + datasets_per_data_model = datasets_info_per_data_model.datasets_info_per_data_model assert set(datasets_per_data_model.keys()) == set( expected_datasets_per_data_model.keys() )