Update SSSOM Extended Prefix Map (#540)

This pull request updates sssom extended prefix map (epm). No worrying changes to any prefixes we need to act on. Co-authored-by: matentzn <[email protected]>
mapping-commons · Jun 10, 2024 · fdb2e71 · fdb2e71
1 parent 4026bef
commit fdb2e71
Showing 1 changed file with 24 additions and 6 deletions.
diff --git a/src/sssom/obo.epm.json b/src/sssom/obo.epm.json
@@ -3192,6 +3192,7 @@
             "http://n2t.net/interpro:",
             "http://www.ebi.ac.uk/interpro/IEntry?ac=",
             "http://www.ebi.ac.uk/interpro/entry/",
+            "http://www.ebi.ac.uk/interpro/entry/InterPro/",
             "https://bio2rdf.org/interpro:",
             "https://bioregistry.io/IP:",
             "https://bioregistry.io/IPR:",
@@ -3203,7 +3204,8 @@
             "https://n2t.net/interpro:",
             "https://purl.obolibrary.org/obo/IPR_",
             "https://www.ebi.ac.uk/interpro/IEntry?ac=",
-            "https://www.ebi.ac.uk/interpro/entry/"
+            "https://www.ebi.ac.uk/interpro/entry/",
+            "https://www.ebi.ac.uk/interpro/entry/InterPro/"
         ]
     },
     {
@@ -5153,9 +5155,11 @@
         "uri_prefix_synonyms": [
             "http://bioregistry.io/PECO:",
             "http://bioregistry.io/peco:",
+            "http://browser.planteome.org/amigo/term/PECO:",
             "http://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_",
             "https://bioregistry.io/PECO:",
             "https://bioregistry.io/peco:",
+            "https://browser.planteome.org/amigo/term/PECO:",
             "https://purl.obolibrary.org/obo/PECO_",
             "https://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_"
         ]
@@ -8277,7 +8281,11 @@
         "uri_prefix_synonyms": [
             "http://biofactoid.org/document/",
             "http://bioregistry.io/biofactoid:",
-            "https://bioregistry.io/biofactoid:"
+            "http://identifiers.org/biofactoid/",
+            "http://identifiers.org/biofactoid:",
+            "https://bioregistry.io/biofactoid:",
+            "https://identifiers.org/biofactoid/",
+            "https://identifiers.org/biofactoid:"
         ]
     },
     {
@@ -11623,7 +11631,6 @@
             "http://bioregistry.io/DrugBank:",
             "http://bioregistry.io/drugbank:",
             "http://go.drugbank.com/drugs/",
-            "http://go.drugbank.com/drugs/DB",
             "http://identifiers.org/drugbank/",
             "http://identifiers.org/drugbank:",
             "http://n2t.net/drugbank:",
@@ -11632,7 +11639,6 @@
             "https://bioregistry.io/DrugBank:",
             "https://bioregistry.io/drugbank:",
             "https://go.drugbank.com/drugs/",
-            "https://go.drugbank.com/drugs/DB",
             "https://identifiers.org/drugbank/",
             "https://identifiers.org/drugbank:",
             "https://n2t.net/drugbank:",
@@ -16020,6 +16026,16 @@
             "https://www.isni.org/isni/"
         ]
     },
+    {
+        "pattern": "^\\d+$",
+        "prefix": "iso.3166",
+        "uri_prefix": "https://data.who.int/countries/",
+        "uri_prefix_synonyms": [
+            "http://bioregistry.io/iso.3166:",
+            "http://data.who.int/countries/",
+            "https://bioregistry.io/iso.3166:"
+        ]
+    },
     {
         "prefix": "iso15926",
         "uri_prefix": "http://standards.iso.org/iso/15926/part14/",
@@ -16612,7 +16628,9 @@
         "prefix": "lbo",
         "uri_prefix": "http://purl.obolibrary.org/obo/LBO_",
         "uri_prefix_synonyms": [
+            "http://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_",
             "http://bioregistry.io/lbo:",
+            "https://bioportal.bioontology.org/ontologies/LBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/LBO_",
             "https://bioregistry.io/lbo:",
             "https://purl.obolibrary.org/obo/LBO_"
         ]
@@ -18775,13 +18793,13 @@
             "http://bioregistry.io/NUI:",
             "http://bioregistry.io/ndf-rt:",
             "http://bioregistry.io/ndfrt:",
-            "http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#",
+            "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NDFRT&code=",
             "https://bio2rdf.org/ndfrt:",
             "https://bioportal.bioontology.org/ontologies/NDFRT?p=classes&conceptid=",
             "https://bioregistry.io/NUI:",
             "https://bioregistry.io/ndf-rt:",
             "https://bioregistry.io/ndfrt:",
-            "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#",
+            "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NDFRT&code=",
             "https://purl.bioontology.org/ontology/NDFRT/"
         ]
     },