Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Pass extra GFA segment / link attributes (tags) to the visualization #238

Open
fedarko opened this issue Mar 30, 2023 · 0 comments
Open

Comments

@fedarko
Copy link
Member

fedarko commented Mar 30, 2023

#23 describes doing this for depth, but there are other optional fields worth thinking about (k-mer coverage, link "mapping quality," etc.) -- see https://github.com/GFA-spec/GFA-spec/blob/master/GFA1.md.

This is a similar (but probably easier) issue to #147. I guess the ideal way to handle this is detecting all optional fields of all segments / links (with the understanding that only some segments or links in a file may have information for a given field), and then just passing these on to the visualization.

@fedarko fedarko changed the title Pass extra GFA segment / link attributes to the visualization Pass extra GFA segment / link attributes (tags) to the visualization Apr 13, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant