diff --git a/src/scripts/scaffolding/scaffold_graph.py b/src/scripts/scaffolding/scaffold_graph.py index 1c835e5..a868b2e 100755 --- a/src/scripts/scaffolding/scaffold_graph.py +++ b/src/scripts/scaffolding/scaffold_graph.py @@ -824,7 +824,7 @@ def fixHaploidNames(self, paths: path_storage.PathStorage): large_haploid_info = [] reassigned = 0 - reassigning_hap_id = 1 + reassigning_hap_id = 2 not_connected_hap_assign = 0 for i in range (0, len(large_haploid_ids)): path_id = large_haploid_ids[i]