diff --git a/src/cutadapt/pipeline.py b/src/cutadapt/pipeline.py index 8c07f594..84d85549 100644 --- a/src/cutadapt/pipeline.py +++ b/src/cutadapt/pipeline.py @@ -36,7 +36,6 @@ PairedDemultiplexer, CombinatorialDemultiplexer, SingleEndStep, - PairedSingleEndStep, ) logger = logging.getLogger() @@ -184,10 +183,6 @@ def _final_filter(self, outfiles: OutputFiles): def _create_demultiplexer(self, outfiles: OutputFiles): pass - @abstractmethod - def _wrap_single_end_step(self, step: SingleEndStep): - pass - class SingleEndPipeline(Pipeline): """ @@ -263,9 +258,6 @@ def _create_demultiplexer(self, outfiles: OutputFiles) -> Demultiplexer: writers[name] = self._open_writer(file, force_fasta=outfiles.force_fasta) return Demultiplexer(writers) - def _wrap_single_end_step(self, step: SingleEndStep): - return step - class PairedEndPipeline(Pipeline): """ @@ -404,6 +396,3 @@ def open_writer(file, file2): for name, file in outfiles.demultiplex_out.items(): writers[name] = open_writer(file, outfiles.demultiplex_out2[name]) return PairedDemultiplexer(writers) - - def _wrap_single_end_step(self, step: SingleEndStep): - return PairedSingleEndStep(step)