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Here are some things to fix in the Rmd based on todays presentation:
Volcano plot. We should look at making the x axis the delta-beta value
Enrichment plots. There should be a dashed line at x=1 so that we can see what is significant
Beeswarm. There was a heading saying logFC which isn't correct
Litzky figures. The volcano plot wasn't square like the others so you need to make sure the chunk has fig.height=8,fig.width=8
Meta-analysis effect sizes. We need to quantify the effect sizes. We should also make forest plots for the probes and DMRs
The text was updated successfully, but these errors were encountered:
mitchwjnorris
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Here are some things to fix in the Rmd based on todays presentation:
Volcano plot. We should look at making the x axis the delta-beta value
Enrichment plots. There should be a dashed line at x=1 so that we can see what is significant
Beeswarm. There was a heading saying logFC which isn't correct
Litzky figures. The volcano plot wasn't square like the others so you need to make sure the chunk has fig.height=8,fig.width=8
Meta-analysis effect sizes. We need to quantify the effect sizes. We should also make forest plots for the probes and DMRs
The text was updated successfully, but these errors were encountered: