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Fix the warnings for methylation data #39

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markziemann opened this issue Sep 18, 2024 · 0 comments
Open

Fix the warnings for methylation data #39

markziemann opened this issue Sep 18, 2024 · 0 comments

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@markziemann
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Shouldn't be a warning, maybe a message instead.

 gu_lim_m <- mitch_import(gu_lim,DEtype="limma",geneTable=gt,geneIDcol="Name")

The input is a single dataframe; one contrast only. Converting
        it to a list for you.
Note: Mean no. genes in input = 790658
Note: no. genes in output = 22269
Warning message:
In mitch_import(gu_lim, DEtype = "limma", geneTable = gt, geneIDcol = "Name") :
  Warning: less than half of the input genes are also in the
        output
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