pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "explainable-cell-graphs"
version = "1.0.0"
description = "Explainable Cell Graphs"
requires-python = "==3.12"
readme = {file = "README.md", content-type = "text/markdown"}
dynamic = ["dependencies"]

[tool.setuptools.dynamic]
dependencies = { file = ["requirements.txt"] }

[project.urls]
"Homepage" = "https://github.com/marvinsxtr/explainable-cell-graphs"

[tool.setuptools.packages.find]
exclude = ["assets*", "notebooks*"]

[tool.wheel]
exclude = ["assets*", "notebooks*"]

[tool.mypy]
explicit_package_bases = true
disable_error_code = ["import-untyped", "var-annotated"]

[[tool.mypy.overrides]]
module = "cloudpathlib.*"
ignore_errors = true
follow_imports = "skip"

[tool.ruff]
line-length = 119
indent-width = 4
select = ["ALL"]
ignore = [
    "ANN002",
    "ANN003",
    "ANN101",
    "ANN102",
    "ANN401",
    "D413",
    "COM812",
    "D100",
    "D104",
    "D107",
    "D205",
    "PD901",
    "D400",
    "D401",
    "D415",
    "FA",
    "SLF",
    "INP",
    "TRY003",
    "TRY201",
    "EM",
    "FBT",
    "RET",
    "C406",
    "E741",
    "PLR2004",
    "RUF009",
    "RUF012",
    "BLE001",
    "S603",
    "S607",
    "S506",
    "FIX002",
    "NPY002",
    "G004",
    "S311",
    "PIE790",
    "TRY400",
    "S108",
    "W191",
    "E111",
    "E114",
    "E117",
    "D206",
    "D300",
    "Q000",
    "Q001",
    "Q002",
    "Q003",
    "COM812",
    "COM819",
    "D203",
    "D213",
    "N806",
    "N803",
    "TCH001",
    "E712",
    "PLR0913"
]

[tool.ruff.per-file-ignores]
"**/tests/**/*.py" = [
    "S101",
    "ARG",
    "FBT",
]