pyproject.toml

[build-system]
requires = ["setuptools", "wheel", "numpy", "cython"]

[tool.pytest.ini_options]
addopts = [
    "--doctest-modules",
    "--doctest-glob",
    "*.pyx",
]
doctest_optionflags = [
    "NORMALIZE_WHITESPACE",
    "IGNORE_EXCEPTION_DETAIL",
]

[tool.check-manifest]
ignore = [
    ".coveragerc",
    ".dockerignore",
    ".editorconfig",
    "aarch64.Dockerfile",
    "checklist.py",
    # created by conda-incubator/setup-miniconda@v3 action
    "ci/setup-miniconda-patched-conda_host_env.yml",
]

# Basic configurations for Ruff.
# See https://docs.astral.sh/ruff/configuration/
[tool.ruff]
target-version = "py38"
exclude = [
    "skbio/**/tests/*",  # ignoring to be able to implement pydocstyle
    "doc/**",  # documentation
    "web/**",  # website
]

[tool.ruff.lint]
select = ["E", "W"]  # pycodestyle (E, W)
ignore = [
    "D203",  # puts a space before class docstrings
    "D213",  # puts summary on second line
    "D400",  # redundant with D415 in place
    "D301",  # forces raw string literals
]