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Adding Nearest Neighbor Interchange (NNI) algorithm for phylogenetic …
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…reconstruction (scikit-bio#2050)

* added nni method

* adding nni, unit tests, and changes to changelog

* change nni import in test file

* fixed average distance matrix method and test

* fixed nni unit tests

* fixed nni unit tests

* updated nni, added examples in documentation, and updated changelog

* updating nni

* updating nni

* updated docstring test in example section

* updated docstring

* updated docstring test for example

* updated docstrings

* updated nni's error raising

* updated nni's error raising tests

* updated nni's error raising tests

* removed deprecated test for leaf root flag

* updated leaf root flag test

* updated nni binary flag test

* updated nni leaf root flag test
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christapo authored Jun 20, 2024
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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## Version 0.6.2-dev

### Features

* Added `nni` function for phylogenetic tree rearrangement using nearest neighbor interchange (NNI) ([#2050](https://github.com/scikit-bio/scikit-bio/pull/2050))

## Version 0.6.1

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